ports/132249: [Maintainer Update]biology/paml:update to 4.2b

[Wen Heping]

>Number:         132249
>Category:       ports
>Synopsis:       [Maintainer Update]biology/paml:update to 4.2b
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Mon Mar 02 08:10:02 UTC 2009
>Closed-Date:
>Last-Modified:
>Originator:     Wen Heping
>Release:        FreeBSD-8.0 Current
>Organization:
ChangAn Middle School
>Environment:
FreeBSD fb8.wenjing.com 8.0-CURRENT FreeBSD 8.0-CURRENT #1: Tue Dec 16 00:26:59 HKT 2008     root at fb8.wenjing.com:/usr/obj/usr/src/sys/GENERIC  i386
>Description:
update to 4.2b from 4.2
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

--- Makefile.orig	2009-03-02 21:04:57.000000000 +0800
+++ Makefile	2009-03-02 21:12:56.000000000 +0800
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	paml
-PORTVERSION=	4.2
+PORTVERSION=	4.2b
 CATEGORIES=	biology
 MASTER_SITES=	http://abacus.gene.ucl.ac.uk/software/
 DISTNAME=	${PORTNAME}${PORTVERSION}
@@ -15,7 +15,7 @@
 COMMENT=	Phylogenetic Analysis by Maximum Likelihood (PAML)
 
 USE_GMAKE=	YES
-WRKSRC=		${WRKDIR}/${DISTNAME:S/.//g}/src
+WRKSRC=		${WRKDIR}/${PORTNAME}42/src
 MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS}"
 
 BINARIES=	baseml basemlg chi2 codeml evolver pamp yn00
@@ -28,7 +28,7 @@
 .if !defined(NOPORTDOCS)
 	${MKDIR} ${DOCSDIR}
 .for f in ${DOC_FILES}
-	${INSTALL_DATA} ${WRKDIR}/${DISTNAME:S/.//g}/doc/${f} ${DOCSDIR}
+	${INSTALL_DATA} ${WRKDIR}/${PORTNAME}42/doc/${f} ${DOCSDIR}
 .endfor
 .endif
 
--- distinfo.orig	2008-12-24 17:17:21.000000000 +0800
+++ distinfo	2009-03-02 21:09:28.000000000 +0800
@@ -1,3 +1,3 @@
-MD5 (paml4.2.tar.gz) = 0fda67df9ec2085e088b422af0cde888
-SHA256 (paml4.2.tar.gz) = af413a8958f9b48696af68a12dc1b50c945c04c1f85389f8fc2265e3038f5318
-SIZE (paml4.2.tar.gz) = 2872381
+MD5 (paml4.2b.tar.gz) = 9f1f5842534aeeb8101d402abaa1fee1
+SHA256 (paml4.2b.tar.gz) = fc11d44cfb31d303ec619156649dd2f264de743c64ebe21263cdffb09064904a
+SIZE (paml4.2b.tar.gz) = 2637368


>Release-Note:
>Audit-Trail:
>Unformatted: