ports/118358: R update from 2.6.0 to 2.6.1 version
Vittorio De Martino
vdemart1 at tin.it
Fri Nov 30 18:20:01 UTC 2007
>Number: 118358
>Category: ports
>Synopsis: R update from 2.6.0 to 2.6.1 version
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: change-request
>Submitter-Id: current-users
>Arrival-Date: Fri Nov 30 18:20:01 UTC 2007
>Closed-Date:
>Last-Modified:
>Originator: Vittorio De Martino
>Release: 6.2
>Organization:
>Environment:
FreeBSD hpbsd.vic 6.2-RELEASE-p7 FreeBSD 6.2-RELEASE-p7 #2: Tue Sep 4 15:48:37 UTC 2007 victor at hpbsd.vic:/usr/obj/usr/src/sys/HP02 i386
>Description:
I'm proposing a diff file to update R from 2.6.0 to 2.6.1
>How-To-Repeat:
>Fix:
Patch attached with submission follows:
diff -ruN R-2.6.0/Makefile R/Makefile
--- R-2.6.0/Makefile Sat Oct 27 15:11:19 2007
+++ R/Makefile Fri Nov 30 17:24:31 2007
@@ -7,7 +7,7 @@
#
PORTNAME= R
-PORTVERSION= 2.6.0
+PORTVERSION= 2.6.1
CATEGORIES= math lang
MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \
ftp://cran.r-project.org/pub/R/src/base/R-2/ \
diff -ruN R-2.6.0/distinfo R/distinfo
--- R-2.6.0/distinfo Sat Oct 27 15:11:19 2007
+++ R/distinfo Fri Nov 30 17:25:20 2007
@@ -1,3 +1,3 @@
-MD5 (R-2.6.0.tar.gz) = 97e5d2542349925962b7469456d45731
-SHA256 (R-2.6.0.tar.gz) = 8a916e653affa83584119dc08a8b12e30e430dee19a398513515003c43d791da
-SIZE (R-2.6.0.tar.gz) = 15447985
+MD5 (R-2.6.1.tar.gz) = 19c35a69e1afa73f5f70f91ff9939233
+SHA256 (R-2.6.1.tar.gz) = 8fe505cbd9562cc84422475bc5c0b8e1b88b14d0c9e11d0de4f9e83ae8ce2563
+SIZE (R-2.6.1.tar.gz) = 15519691
diff -ruN R-2.6.0/pkg-plist R/pkg-plist
--- R-2.6.0/pkg-plist Sat Oct 27 15:11:20 2007
+++ R/pkg-plist Fri Nov 30 19:03:10 2007
@@ -76,7 +76,7 @@
lib/R/include/Rversion.h
lib/R/include/S.h
lib/R/lib/libR.so
-%%BLAS%%lib/R/lib/libRlapack.so
+lib/R/lib/libRlapack.so
lib/R/library/KernSmooth/CONTENTS
lib/R/library/KernSmooth/DESCRIPTION
lib/R/library/KernSmooth/INDEX
@@ -2527,6 +2527,7 @@
lib/R/library/boot/man/boot.Rd.gz
lib/R/library/boot/po/en at quot/LC_MESSAGES/R-boot.mo
lib/R/library/boot/po/fr/LC_MESSAGES/R-boot.mo
+lib/R/library/boot/po/ru/LC_MESSAGES/R-boot.mo
lib/R/library/class/CITATION
lib/R/library/class/CONTENTS
lib/R/library/class/DESCRIPTION
@@ -2553,6 +2554,8 @@
lib/R/library/class/R-ex/olvq1.R
lib/R/library/class/R-ex/reduce.nn.R
lib/R/library/class/R/class
+lib/R/library/class/R/class.rdb
+lib/R/library/class/R/class.rdx
lib/R/library/class/help/AnIndex
lib/R/library/class/help/SOM
lib/R/library/class/help/batchSOM
@@ -2827,7 +2830,6 @@
lib/R/library/codetools/Meta/package.rds
lib/R/library/codetools/NAMESPACE
lib/R/library/codetools/R-ex/checkUsage.R
-lib/R/library/codetools/R-ex/codetools.R
lib/R/library/codetools/R-ex/findGlobals.R
lib/R/library/codetools/R-ex/showTree.R
lib/R/library/codetools/R/codetools
@@ -3596,6 +3598,7 @@
lib/R/library/grDevices/latex/xyz.coords.tex
lib/R/library/grDevices/libs/grDevices.so
lib/R/library/grDevices/man/grDevices.Rd.gz
+lib/R/library/grDevices/po/de/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/en at quot/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/en at quot/LC_MESSAGES/grDevices.mo
lib/R/library/grDevices/po/en_GB/LC_MESSAGES/R-grDevices.mo
@@ -3888,6 +3891,7 @@
lib/R/library/graphics/latex/xspline.tex
lib/R/library/graphics/latex/zAxis.tex
lib/R/library/graphics/man/graphics.Rd.gz
+lib/R/library/graphics/po/de/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/en at quot/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/fr/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/it/LC_MESSAGES/R-graphics.mo
@@ -4196,6 +4200,7 @@
lib/R/library/grid/latex/xDetails.tex
lib/R/library/grid/libs/grid.so
lib/R/library/grid/man/grid.Rd.gz
+lib/R/library/grid/po/de/LC_MESSAGES/R-grid.mo
lib/R/library/grid/po/en at quot/LC_MESSAGES/R-grid.mo
lib/R/library/grid/po/en at quot/LC_MESSAGES/grid.mo
lib/R/library/grid/po/fr/LC_MESSAGES/R-grid.mo
@@ -4246,6 +4251,7 @@
lib/R/library/lattice/R-ex/qqmath.R
lib/R/library/lattice/R-ex/rfs.R
lib/R/library/lattice/R-ex/shingles.R
+lib/R/library/lattice/R-ex/simpleTheme.R
lib/R/library/lattice/R-ex/singer.R
lib/R/library/lattice/R-ex/splom.R
lib/R/library/lattice/R-ex/strip.default.R
@@ -4312,6 +4318,7 @@
lib/R/library/lattice/help/rfs
lib/R/library/lattice/help/shingles
lib/R/library/lattice/help/simpleKey
+lib/R/library/lattice/help/simpleTheme
lib/R/library/lattice/help/singer
lib/R/library/lattice/help/splom
lib/R/library/lattice/help/strip.default
@@ -4372,6 +4379,7 @@
lib/R/library/lattice/html/rfs.html
lib/R/library/lattice/html/shingles.html
lib/R/library/lattice/html/simpleKey.html
+lib/R/library/lattice/html/simpleTheme.html
lib/R/library/lattice/html/singer.html
lib/R/library/lattice/html/splom.html
lib/R/library/lattice/html/strip.default.html
@@ -4431,6 +4439,7 @@
lib/R/library/lattice/latex/rfs.tex
lib/R/library/lattice/latex/shingles.tex
lib/R/library/lattice/latex/simpleKey.tex
+lib/R/library/lattice/latex/simpleTheme.tex
lib/R/library/lattice/latex/singer.tex
lib/R/library/lattice/latex/splom.tex
lib/R/library/lattice/latex/strip.default.tex
@@ -5100,7 +5109,6 @@
lib/R/library/nlme/R-ex/pdMatrix.reStruct.R
lib/R/library/nlme/R-ex/pdNatural.R
lib/R/library/nlme/R-ex/pdSymm.R
-lib/R/library/nlme/R-ex/phenoModel.R
lib/R/library/nlme/R-ex/plot.ACF.R
lib/R/library/nlme/R-ex/plot.Variogram.R
lib/R/library/nlme/R-ex/plot.augPred.R
@@ -5124,7 +5132,6 @@
lib/R/library/nlme/R-ex/print.varFunc.R
lib/R/library/nlme/R-ex/qqnorm.gls.R
lib/R/library/nlme/R-ex/qqnorm.lme.R
-lib/R/library/nlme/R-ex/quinModel.R
lib/R/library/nlme/R-ex/random.effects.R
lib/R/library/nlme/R-ex/ranef.lmList.R
lib/R/library/nlme/R-ex/ranef.lme.R
@@ -6252,6 +6259,8 @@
lib/R/library/spatial/R-ex/trmat.R
lib/R/library/spatial/R-ex/variogram.R
lib/R/library/spatial/R/spatial
+lib/R/library/spatial/R/spatial.rdb
+lib/R/library/spatial/R/spatial.rdx
lib/R/library/spatial/help/AnIndex
lib/R/library/spatial/help/Kaver
lib/R/library/spatial/help/Kenvl
@@ -7769,7 +7778,6 @@
lib/R/library/survival/R-ex/survfit.R
lib/R/library/survival/R-ex/survobrien.R
lib/R/library/survival/R-ex/survreg.R
-lib/R/library/survival/R-ex/survreg.control.R
lib/R/library/survival/R-ex/survreg.distributions.R
lib/R/library/survival/R-ex/survreg.old.R
lib/R/library/survival/R-ex/tcut.R
@@ -7978,17 +7986,17 @@
lib/R/library/tcltk/Meta/Rd.rds
lib/R/library/tcltk/Meta/demo.rds
lib/R/library/tcltk/Meta/hsearch.rds
-%%TCLTK%%lib/R/library/tcltk/Meta/nsInfo.rds
+lib/R/library/tcltk/Meta/nsInfo.rds
lib/R/library/tcltk/Meta/package.rds
-%%TCLTK%%lib/R/library/tcltk/NAMESPACE
+lib/R/library/tcltk/NAMESPACE
lib/R/library/tcltk/R-ex/TclInterface.R
lib/R/library/tcltk/R-ex/TkCommands.R
lib/R/library/tcltk/R-ex/TkWidgetcmds.R
lib/R/library/tcltk/R-ex/TkWidgets.R
lib/R/library/tcltk/R-ex/tclServiceMode.R
lib/R/library/tcltk/R/tcltk
-%%TCLTK%%lib/R/library/tcltk/R/tcltk.rdb
-%%TCLTK%%lib/R/library/tcltk/R/tcltk.rdx
+lib/R/library/tcltk/R/tcltk.rdb
+lib/R/library/tcltk/R/tcltk.rdx
lib/R/library/tcltk/demo/tkcanvas.R
lib/R/library/tcltk/demo/tkdensity.R
lib/R/library/tcltk/demo/tkfaq.R
@@ -8036,7 +8044,7 @@
lib/R/library/tcltk/latex/tkStartGUI.tex
lib/R/library/tcltk/latex/tk_select.list.tex
lib/R/library/tcltk/latex/tkpager.tex
-%%TCLTK%%lib/R/library/tcltk/libs/tcltk.so
+lib/R/library/tcltk/libs/tcltk.so
lib/R/library/tcltk/man/tcltk.Rd.gz
lib/R/library/tcltk/po/en at quot/LC_MESSAGES/R-tcltk.mo
lib/R/library/tcltk/po/en at quot/LC_MESSAGES/tcltk.mo
@@ -8584,7 +8592,7 @@
lib/R/library/utils/po/ko/LC_MESSAGES/R-utils.mo
lib/R/library/utils/po/ru/LC_MESSAGES/R-utils.mo
lib/R/library/utils/po/zh_CN/LC_MESSAGES/R-utils.mo
-%%X11%%lib/R/modules/R_X11.so
+lib/R/modules/R_X11.so
lib/R/modules/internet.so
lib/R/modules/lapack.so
lib/R/modules/vfonts.so
@@ -8602,6 +8610,7 @@
lib/R/share/licenses/LGPL-2
lib/R/share/licenses/LGPL-2.1
lib/R/share/licenses/LGPL-3
+lib/R/share/licenses/license.db
lib/R/share/locale/de/LC_MESSAGES/R.mo
lib/R/share/locale/en/LC_MESSAGES/R.mo
lib/R/share/locale/en at quot/LC_MESSAGES/R.mo
@@ -8648,6 +8657,8 @@
lib/libR.so
lib/libR.so.0
libdata/pkgconfig/libR.pc
+man/man1/R.1.gz
+man/man1/Rscript.1.gz
%%DOCSDIR%%/AUTHORS
%%DOCSDIR%%/COPYING
%%DOCSDIR%%/COPYING.LIB
@@ -8683,40 +8694,40 @@
%%DOCSDIR%%/html/search/index.txt
%%DOCSDIR%%/html/thanks.html
%%DOCSDIR%%/html/up.jpg
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.dvi
+%%DOCSDIR%%/manual/R-FAQ.dvi
%%DOCSDIR%%/manual/R-FAQ.html
-%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.pdf
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-admin.dvi
+%%DOCSDIR%%/manual/R-FAQ.pdf
+%%DOCSDIR%%/manual/R-admin.dvi
%%DOCSDIR%%/manual/R-admin.html
-%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-admin.pdf
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-data.dvi
+%%DOCSDIR%%/manual/R-admin.pdf
+%%DOCSDIR%%/manual/R-data.dvi
%%DOCSDIR%%/manual/R-data.html
-%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-data.pdf
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-exts.dvi
+%%DOCSDIR%%/manual/R-data.pdf
+%%DOCSDIR%%/manual/R-exts.dvi
%%DOCSDIR%%/manual/R-exts.html
-%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-exts.pdf
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-intro.dvi
+%%DOCSDIR%%/manual/R-exts.pdf
+%%DOCSDIR%%/manual/R-intro.dvi
%%DOCSDIR%%/manual/R-intro.html
-%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-intro.pdf
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-ints.dvi
+%%DOCSDIR%%/manual/R-intro.pdf
+%%DOCSDIR%%/manual/R-ints.dvi
%%DOCSDIR%%/manual/R-ints.html
-%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-ints.pdf
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-lang.dvi
+%%DOCSDIR%%/manual/R-ints.pdf
+%%DOCSDIR%%/manual/R-lang.dvi
%%DOCSDIR%%/manual/R-lang.html
-%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-lang.pdf
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/QQ.eps
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ecdf.eps
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig11.eps
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig12.eps
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/hist.eps
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ice.eps
-%%DVI_MANUAL%%%%DOCSDIR%%/manual/refman.dvi
-%%PDF_MANUAL%%%%DOCSDIR%%/manual/refman.pdf
-%%DVI_MANUAL%%@dirrm %%DOCSDIR%%/manual/images
- at dirrm %%DOCSDIR%%/manual
- at dirrm %%DOCSDIR%%/html/search
- at dirrm %%DOCSDIR%%/html
- at dirrm %%DOCSDIR%%
+%%DOCSDIR%%/manual/R-lang.pdf
+%%DOCSDIR%%/manual/images/QQ.eps
+%%DOCSDIR%%/manual/images/ecdf.eps
+%%DOCSDIR%%/manual/images/fig11.eps
+%%DOCSDIR%%/manual/images/fig12.eps
+%%DOCSDIR%%/manual/images/hist.eps
+%%DOCSDIR%%/manual/images/ice.eps
+%%DOCSDIR%%/manual/refman.dvi
+%%DOCSDIR%%/manual/refman.pdf
+ at dirrm share/doc/R/manual/images
+ at dirrm share/doc/R/manual
+ at dirrm share/doc/R/html/search
+ at dirrm share/doc/R/html
+ at dirrm share/doc/R
@dirrm lib/R/share/texmf
@dirrm lib/R/share/sh
@dirrm lib/R/share/perl/Text
@@ -8824,7 +8835,7 @@
@dirrm lib/R/library/tcltk/po/en at quot
@dirrm lib/R/library/tcltk/po
@dirrm lib/R/library/tcltk/man
-%%TCLTK%%@dirrm lib/R/library/tcltk/libs
+ at dirrm lib/R/library/tcltk/libs
@dirrm lib/R/library/tcltk/latex
@dirrm lib/R/library/tcltk/html
@dirrm lib/R/library/tcltk/help
@@ -9050,6 +9061,8 @@
@dirrm lib/R/library/grid/po/fr
@dirrm lib/R/library/grid/po/en at quot/LC_MESSAGES
@dirrm lib/R/library/grid/po/en at quot
+ at dirrm lib/R/library/grid/po/de/LC_MESSAGES
+ at dirrm lib/R/library/grid/po/de
@dirrm lib/R/library/grid/po
@dirrm lib/R/library/grid/man
@dirrm lib/R/library/grid/libs
@@ -9075,6 +9088,8 @@
@dirrm lib/R/library/graphics/po/fr
@dirrm lib/R/library/graphics/po/en at quot/LC_MESSAGES
@dirrm lib/R/library/graphics/po/en at quot
+ at dirrm lib/R/library/graphics/po/de/LC_MESSAGES
+ at dirrm lib/R/library/graphics/po/de
@dirrm lib/R/library/graphics/po
@dirrm lib/R/library/graphics/man
@dirrm lib/R/library/graphics/latex
@@ -9101,6 +9116,8 @@
@dirrm lib/R/library/grDevices/po/en_GB
@dirrm lib/R/library/grDevices/po/en at quot/LC_MESSAGES
@dirrm lib/R/library/grDevices/po/en at quot
+ at dirrm lib/R/library/grDevices/po/de/LC_MESSAGES
+ at dirrm lib/R/library/grDevices/po/de
@dirrm lib/R/library/grDevices/po
@dirrm lib/R/library/grDevices/man
@dirrm lib/R/library/grDevices/libs
@@ -9169,6 +9186,8 @@
@dirrm lib/R/library/class/R
@dirrm lib/R/library/class/Meta
@dirrm lib/R/library/class
+ at dirrm lib/R/library/boot/po/ru/LC_MESSAGES
+ at dirrm lib/R/library/boot/po/ru
@dirrm lib/R/library/boot/po/fr/LC_MESSAGES
@dirrm lib/R/library/boot/po/fr
@dirrm lib/R/library/boot/po/en at quot/LC_MESSAGES
@@ -9244,4 +9263,3 @@
@dirrm lib/R/bin/exec
@dirrm lib/R/bin
@dirrm lib/R
- at dirrmtry libdata/pkgconfig
>Release-Note:
>Audit-Trail:
>Unformatted:
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