ports/111346: [science/cdo] update to latest version (1.0.7)

[Sunpoet Po-Chuan Hsieh]

>Number:         111346
>Category:       ports
>Synopsis:       [science/cdo] update to latest version (1.0.7)
>Confidential:   no
>Severity:       non-critical
>Priority:       medium
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Sat Apr 07 07:10:04 GMT 2007
>Closed-Date:
>Last-Modified:
>Originator:     Sunpoet Po-Chuan Hsieh
>Release:        FreeBSD 6.2-STABLE i386
>Organization:
SUNPOET.net
>Environment:
System: FreeBSD IRIS.sunpoet.net 6.2-STABLE FreeBSD 6.2-STABLE #1: Mon Feb 12 03:43:56 CST 2007 sunpoet at IRIS.sunpoet.net:/usr/obj/usr/src/sys/sunpoet i386

	
>Description:
Update to latest version (1.0.7)
	
>How-To-Repeat:
	
>Fix:
diff -ruN cdo.orig/Makefile cdo/Makefile
--- cdo.orig/Makefile	Tue Dec 26 09:43:21 2006
+++ cdo/Makefile	Sat Apr  7 05:06:07 2007
@@ -7,7 +7,7 @@
 #
 
 PORTNAME=	cdo
-PORTVERSION=	1.0.6
+PORTVERSION=	1.0.7
 CATEGORIES=	science
 MASTER_SITES=	http://www.mpimet.mpg.de/fileadmin/software/cdo/ \
 		http://sunpoet.net/distfiles/
@@ -28,6 +28,12 @@
 OPTIONS=	HDF5	"HDF5 support" off \
 		NETCDF	"NETCDF support" off
 
+.include <bsd.port.pre.mk>
+
+.if (${OSVERSION} > 700000) || (${ARCH} != "sparc64" && ${OSVERSION} > 600000)
+CONFIGURE_ENV+=	CFLAGS="${CFLAGS} -DPTHREAD_MUTEXATTR_CONDATTR"
+.endif
+
 .if defined(WITH_HDF5)
 CONFIGURE_ARGS+=	--with-hdf5=${LOCALBASE}
 LIB_DEPENDS+=		hdf5.0:${PORTSDIR}/science/hdf5
@@ -35,10 +41,10 @@
 
 .if defined(WITH_NETCDF)
 CONFIGURE_ARGS+=	--with-netcdf=${LOCALBASE}
-LIB_DEPENDS+=		netcdf.1:${PORTSDIR}/science/netcdf
+LIB_DEPENDS+=		netcdf.4:${PORTSDIR}/science/netcdf
 .endif
 
 post-install:
 	@${CAT} ${PKGMESSAGE}
 
-.include <bsd.port.mk>
+.include <bsd.port.post.mk>
diff -ruN cdo.orig/distinfo cdo/distinfo
--- cdo.orig/distinfo	Tue Dec 19 09:18:51 2006
+++ cdo/distinfo	Sat Apr  7 00:20:19 2007
@@ -1,3 +1,3 @@
-MD5 (cdo-1.0.6.tar.gz) = 4d27edf8c576cab34eacf358073456d1
-SHA256 (cdo-1.0.6.tar.gz) = aaf22308a446942bac9158f631ca749cd91d33e4985cca4f6e7c6cf37b474ec5
-SIZE (cdo-1.0.6.tar.gz) = 2279653
+MD5 (cdo-1.0.7.tar.gz) = ee087cbd434f3bacc7b4154300f2cffe
+SHA256 (cdo-1.0.7.tar.gz) = 9aee78fcd0fc500b64e527bee10dea9b9bb607832e0bf40db50685f370ab9d58
+SIZE (cdo-1.0.7.tar.gz) = 2315855
diff -ruN cdo.orig/files/extra-patch-src-config.h.in cdo/files/extra-patch-src-config.h.in
--- cdo.orig/files/extra-patch-src-config.h.in	Thu Jan  1 08:00:00 1970
+++ cdo/files/extra-patch-src-config.h.in	Sat Apr  7 01:26:52 2007
@@ -0,0 +1,10 @@
+--- src/config.h.in.orig	Tue Dec 19 19:07:07 2006
++++ src/config.h.in	Sat Apr  7 01:22:21 2007
+@@ -1,5 +1,7 @@
+ /* src/config.h.in.  Generated from configure.ac by autoheader.  */
+ 
++#define	PTHREAD_MUTEXATTR_CONDATTR 1
++
+ /* Compiler */
+ #undef COMPILER
+ 
diff -ruN cdo.orig/files/patch-src-cdo_pthread.c cdo/files/patch-src-cdo_pthread.c
--- cdo.orig/files/patch-src-cdo_pthread.c	Mon Dec 18 13:41:16 2006
+++ cdo/files/patch-src-cdo_pthread.c	Sat Apr  7 01:25:15 2007
@@ -1,10 +1,10 @@
 --- src/cdo_pthread.c.orig	Wed Mar 22 22:04:18 2006
-+++ src/cdo_pthread.c	Mon Dec 18 10:01:00 2006
++++ src/cdo_pthread.c	Sat Apr  7 01:07:02 2007
 @@ -32,8 +32,10 @@
  {
  #if  defined  (HAVE_LIBPTHREAD)
    pthread_attr_t attr;
-+#if __FreeBSD_version >= 600000
++#if defined (PTHREAD_MUTEXATTR_CONDATTR)
    pthread_mutexattr_t m_attr;
    pthread_condattr_t c_attr;
 +#endif
@@ -15,7 +15,7 @@
    print_pthread_attr("Default pthread attr", &attr);
    pthread_attr_destroy(&attr);
  
-+#if __FreeBSD_version >= 600000
++#if defined (PTHREAD_MUTEXATTR_CONDATTR)
    pthread_mutexattr_init(&m_attr);
    print_pthread_mutexattr("Default pthread mutexattr", &m_attr);
    pthread_mutexattr_destroy(&m_attr);
diff -ruN cdo.orig/files/patch-src-config.h.in cdo/files/patch-src-config.h.in
--- cdo.orig/files/patch-src-config.h.in	Mon Dec 18 13:41:16 2006
+++ cdo/files/patch-src-config.h.in	Sat Apr  7 04:01:40 2007
@@ -1,11 +1,10 @@
---- src/config.h.in.orig	Wed Dec 13 21:30:19 2006
-+++ src/config.h.in	Mon Dec 18 10:41:13 2006
-@@ -1,5 +1,8 @@
- /* src/config.h.in.  Generated from configure.ac by autoheader.  */
+--- src/config.h.in.orig	Tue Dec 19 19:07:07 2006
++++ src/config.h.in	Sat Apr  7 04:00:39 2007
+@@ -107,3 +107,7 @@
  
-+#include <unistd.h>
-+#include <sys/param.h>
+ /* Define for large files, on AIX-style hosts. */
+ #undef _LARGE_FILES
 +
- /* Compiler */
- #undef COMPILER
- 
++#if defined (HAVE_UNISTD_H)
++#include <unistd.h>
++#endif
diff -ruN cdo.orig/files/patch-src-pthread_debug.c cdo/files/patch-src-pthread_debug.c
--- cdo.orig/files/patch-src-pthread_debug.c	Mon Dec 18 13:41:16 2006
+++ cdo/files/patch-src-pthread_debug.c	Sat Apr  7 01:25:15 2007
@@ -1,10 +1,10 @@
 --- src/pthread_debug.c.orig	Mon Dec  4 16:11:40 2006
-+++ src/pthread_debug.c	Mon Dec 18 10:01:00 2006
++++ src/pthread_debug.c	Sat Apr  7 01:12:05 2007
 @@ -77,6 +77,7 @@
  }
  
  
-+#if __FreeBSD_version >= 600000
++#if defined (PTHREAD_MUTEXATTR_CONDATTR)
  void print_pthread_mutexattr(const char *caller,  pthread_mutexattr_t *m_attr)
  {
    int protocol, kind, pshared;
diff -ruN cdo.orig/files/patch-src-pthread_debug.h cdo/files/patch-src-pthread_debug.h
--- cdo.orig/files/patch-src-pthread_debug.h	Mon Dec 18 13:41:16 2006
+++ cdo/files/patch-src-pthread_debug.h	Sat Apr  7 01:25:15 2007
@@ -1,10 +1,10 @@
 --- src/pthread_debug.h.orig	Wed Feb 15 21:22:38 2006
-+++ src/pthread_debug.h	Mon Dec 18 10:01:00 2006
++++ src/pthread_debug.h	Sat Apr  7 01:13:25 2007
 @@ -15,8 +15,10 @@
  void Pthread_cond_wait(const char *caller, pthread_cond_t *cond, pthread_mutex_t *mutex);
  
  void print_pthread_attr(const char *caller, pthread_attr_t *attr);
-+#if __FreeBSD_version >= 600000
++#if defined (PTHREAD_MUTEXATTR_CONDATTR)
  void print_pthread_mutexattr(const char *caller,  pthread_mutexattr_t *m_attr);
  void print_pthread_condattr(const char *caller, pthread_condattr_t *c_attr);
 +#endif
diff -ruN cdo.orig/pkg-message cdo/pkg-message
--- cdo.orig/pkg-message	Tue Dec 19 10:54:41 2006
+++ cdo/pkg-message	Sat Apr  7 00:49:31 2007
@@ -1,4 +1,4 @@
-In CDO version 1.0.6, three new environment variables were introduced:
+Since CDO version 1.0.6, three new environment variables were introduced:
 - CDO_DISABLE_HISTORY:
   If set to 1, the netCDF history attribute of input datasets is not used.
 - CDO_DISABLE_FILESUFFIX:
	
>Release-Note:
>Audit-Trail:
>Unformatted: