ports/72422: biology/paml update to 3.14

[Choe at FreeBSD.org]

>Number:         72422
>Category:       ports
>Synopsis:       biology/paml update to 3.14
>Confidential:   no
>Severity:       non-critical
>Priority:       medium
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Thu Oct 07 13:50:33 GMT 2004
>Closed-Date:
>Last-Modified:
>Originator:     Choe, Cheng-Dae
>Release:        FreeBSD 5.3-BETA7 i386
>Organization:
>Environment:
System: FreeBSD comdongin.com 5.3-BETA7 FreeBSD 5.3-BETA7 #0: Thu Oct 7 03:38:39 KST 2004 root at comdongin.com:/usr/obj/data/src/sys/CDI i386
>Description:
      biology/paml update to 3.14
>How-To-Repeat:
      N/A
>Fix:
diff -ruN paml.bak/Makefile paml/Makefile
--- paml.bak/Makefile   Thu Oct  7 15:18:53 2004
+++ paml/Makefile       Thu Oct  7 22:37:19 2004
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=      paml
-PORTVERSION=   3.13
+PORTVERSION=   3.14
 CATEGORIES=    biology
 MASTER_SITES=  ftp://abacus.gene.ucl.ac.uk/pub/paml/
 DISTNAME=      ${PORTNAME}${PORTVERSION}
diff -ruN paml.bak/distinfo paml/distinfo
--- paml.bak/distinfo   Thu Oct  7 15:18:53 2004
+++ paml/distinfo       Thu Oct  7 22:38:29 2004
@@ -1,2 +1,2 @@
-MD5 (paml3.13.tar.gz) = a08ebd57332c9fe605439bf0025817bd
-SIZE (paml3.13.tar.gz) = 691916
+MD5 (paml3.14.tar.gz) = 233ef39b09e406dc41fb81e14997b764
+SIZE (paml3.14.tar.gz) = 1744383
diff -ruN paml.bak/pkg-plist paml/pkg-plist
--- paml.bak/pkg-plist  Thu Oct  7 15:18:53 2004
+++ paml/pkg-plist      Thu Oct  7 22:34:58 2004
@@ -4,7 +4,6 @@
 bin/chi2
 bin/codeml
 bin/evolver
-bin/mcmctree
 bin/pamp
 bin/yn00
 %%PORTDOCS%%%%DOCSDIR%%/pamlDOC.pdf
>Release-Note:
>Audit-Trail:
>Unformatted: