ports/68199: fix biology/fasta3 and take maintainership

[Fernan Aguero]

>Number:         68199
>Category:       ports
>Synopsis:       fix biology/fasta3 and take maintainership
>Confidential:   no
>Severity:       serious
>Priority:       high
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Tue Jun 22 13:30:23 GMT 2004
>Closed-Date:
>Last-Modified:
>Originator:     Fernan Aguero
>Release:        FreeBSD 4.10-RELEASE i386
>Organization:
IIB-UNSAM
>Environment:

FreeBSD pi.iib.unsam.edu.ar 4.10-RELEASE FreeBSD 4.10-RELEASE #0: Wed May 26 12:56:43 ART 2004 fernan at pi.iib.unsam.edu.ar:/usr/obj/usr/src/sys/PI  i386

	
>Description:
	
	
	biology/fasta3 was marked as BROKEN due to a checksum mismatch.
	It is now scheduled for removal on August 20.

	I am now fixing the build problems and asking for
	maintainership of the port. Johann (the current maintainer) has
	not been very active lately and he already has agreed on me
	taking maintainership of other biology/ ports (p5-bioperl,
	emboss (which BTW I still have to finish)).
	
	Although there are new versions of fasta3 (see
	ftp://ftp.virginia.edu/pub/fasta/), in this PR I am just fixing
	the problems with fasta33t08d4.

	I don't know what could have changed in the files, since the
	version has remained the same ... so the answer about the change
	in checksum is: I really don't know what caused the checksum
	mismatch. I've checked the pkg-plist and nothing new is
	installed ... so to fix it I just went to
	ftp://ftp.virginia.edu/pub/fasta/, downloaded
	fasta33t08d4.shar.Z and updated the distinfo file accordingly.
	Now everything builds and installs fine.
	
	I hope this is enough to save the port.

	I am planning to update it soon to the latest version
	(fasta34t24b1). But that will be in another PR :)
	
	
>How-To-Repeat:
	
	
>Fix:

	



--- Makefile.diff begins here ---
--- /usr/ports/biology/fasta3/Makefile	Sat Feb 28 01:03:30 2004
+++ Makefile	Tue Jun 22 10:02:29 2004
@@ -8,14 +8,12 @@
 PORTNAME=	fasta3
 PORTVERSION=	33.t08.d4
 CATEGORIES=	biology
-MASTER_SITES=	http://ftp.virginia.edu/pub/fasta/
+MASTER_SITES=	ftp://ftp.virginia.edu/pub/fasta/
 DISTNAME=	fasta${PORTVERSION:S/.//g}
 EXTRACT_SUFX=	.shar.Z
 
-MAINTAINER=	wjv at FreeBSD.org
+MAINTAINER=	fernan at iib.unsam.edu.ar
 COMMENT=	A collection of programs for searching DNA and protein databases, v3
-
-BROKEN=		"Checksum mismatch"
 
 NO_CDROM=	May not be sold or incorporated into a commercial product
 WRKSRC=		${WRKDIR}/fasta3
--- Makefile.diff ends here ---

--- distinfo.diff begins here ---
--- /usr/ports/biology/fasta3/distinfo	Sat Apr  3 01:03:35 2004
+++ distinfo	Tue Jun 22 09:49:44 2004
@@ -1,2 +1,2 @@
-MD5 (fasta33t08d4.shar.Z) = 66f0c4731a6ff1cf123067c6ec46e352
-SIZE (fasta33t08d4.shar.Z) = 690366
+MD5 (fasta33t08d4.shar.Z) = e6217268e122b2ca7c51b443425e40e3
+SIZE (fasta33t08d4.shar.Z) = 685912
--- distinfo.diff ends here ---

>Release-Note:
>Audit-Trail:
>Unformatted: