[package - head-armv7-default][biology/ngs-sdk] Failed for ngs-sdk-2.9.6 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Mon Jun 24 19:38:51 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: head/biology/ngs-sdk/Makefile 497382 2019-03-31 03:31:59Z yuri $
Log URL: http://beefy16.nyi.freebsd.org/data/head-armv7-default/p504607_s349218/logs/ngs-sdk-2.9.6.log
Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p504607_s349218
Log:
=>> Building biology/ngs-sdk
build started at Mon Jun 24 19:38:32 UTC 2019
port directory: /usr/ports/biology/ngs-sdk
package name: ngs-sdk-2.9.6
building for: FreeBSD head-armv7-default-job-02 13.0-CURRENT FreeBSD 13.0-CURRENT 1300032 arm
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/ngs-sdk/Makefile 497382 2019-03-31 03:31:59Z yuri $
Poudriere version: 3.2.8-4-g701d8fe1
Host OSVERSION: 1300018
Jail OSVERSION: 1300032
Job Id: 02
!!! Jail is newer than host. (Jail: 1300032, Host: 1300018) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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--MAINTAINER--
yuri at FreeBSD.org
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MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.6/ngs-sdk/ngs/unix/armv7/ -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.6/ngs-sdk/ngs/unix/armv7/ -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555
" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
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--End PLIST_SUB--
--SUB_LIST--
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=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ngs-sdk-2.9.6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.11.1.txz
[head-armv7-default-job-02] Installing pkg-1.11.1...
[head-armv7-default-job-02] Extracting pkg-1.11.1: .......... done
===> ngs-sdk-2.9.6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ngs-sdk-2.9.6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.9.6 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.9.6 for building
=> SHA256 Checksum OK for ncbi-ngs-2.9.6_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.9.6 for building
===> Extracting for ngs-sdk-2.9.6
=> SHA256 Checksum OK for ncbi-ngs-2.9.6_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ngs-sdk-2.9.6
===> Applying FreeBSD patches for ngs-sdk-2.9.6
===========================================================================
=======================<phase: build-depends >============================
===> ngs-sdk-2.9.6 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.2.1_3.txz
[head-armv7-default-job-02] Installing gmake-4.2.1_3...
[head-armv7-default-job-02] `-- Installing gettext-runtime-0.20.1...
[head-armv7-default-job-02] | `-- Installing indexinfo-0.3.1...
[head-armv7-default-job-02] | `-- Extracting indexinfo-0.3.1: .... done
[head-armv7-default-job-02] `-- Extracting gettext-runtime-0.20.1: .......... done
[head-armv7-default-job-02] Extracting gmake-4.2.1_3: .......... done
===> ngs-sdk-2.9.6 depends on executable: gmake - found
===> Returning to build of ngs-sdk-2.9.6
===> ngs-sdk-2.9.6 depends on package: perl5>=5.28.r1<5.29 - not found
===> Installing existing package /packages/All/perl5-5.28.2.txz
[head-armv7-default-job-02] Installing perl5-5.28.2...
[head-armv7-default-job-02] Extracting perl5-5.28.2: .......... done
Message from perl5-5.28.2:
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:
#!/usr/local/bin/perl
or
#!/usr/bin/env perl
The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
===> ngs-sdk-2.9.6 depends on package: perl5>=5.28.r1<5.29 - found
===> Returning to build of ngs-sdk-2.9.6
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for ngs-sdk-2.9.6
CONFIGURING ngs-sdk
Configuring NGS-SDK package
checking system type... FreeBSD
checking machine architecture... arm
configure: error: unsupported architecture 'FreeBSD'
===========================================================================
=======================<phase: build >============================
===> Building for ngs-sdk-2.9.6
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.6'
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.6/ngs-sdk'
*** File 'Makefile.config.FreeBSD.arm' is missing. Please run ./configure
gmake[2]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.6/ngs-sdk/Makefile.rules:72: Makefile.config.FreeBSD.arm] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.6/ngs-sdk'
gmake[1]: *** [Makefile:52: ngs-sdk] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.6'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ngs-sdk
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