[package - head-powerpc64-default][biology/ugene] Failed for ugene-1.31.0_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Jun 4 05:59:17 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: h2+fbsdports at fsfe.org
Last committer: tijl at FreeBSD.org
Ident: $FreeBSD: head/biology/ugene/Makefile 490472 2019-01-16 11:13:44Z tijl $
Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p503023_s348376/logs/ugene-1.31.0_1.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p503023_s348376
Log:
=>> Building biology/ugene
build started at Tue Jun 4 05:49:52 UTC 2019
port directory: /usr/ports/biology/ugene
package name: ugene-1.31.0_1
building for: FreeBSD head-powerpc64-default-job-11 13.0-CURRENT FreeBSD 13.0-CURRENT 1300030 powerpc
maintained by: h2+fbsdports at fsfe.org
Makefile ident: $FreeBSD: head/biology/ugene/Makefile 490472 2019-01-16 11:13:44Z tijl $
Poudriere version: 3.2.8-4-g701d8fe1
Host OSVERSION: 1300012
Jail OSVERSION: 1300030
Job Id: 11
!!! Jail is newer than host. (Jail: 1300030, Host: 1300012) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1300030
UNAME_v=FreeBSD 13.0-CURRENT 1300030
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
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LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-4-g701d8fe1
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POUDRIERE_BUILD_TYPE=bulk
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PWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-powerpc64-default
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OLDPWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for ugene-1.31.0_1:
DOCS=on: Install official UGENE documentation (PDF)
OPENCL=off: Heterogeneous computing via OpenCL
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
h2+fbsdports at fsfe.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--with-qt-includes=/usr/local/include/qt5 --with-qt-libraries=/usr/local/lib/qt5 --with-extra-includes=/usr/local/include --with-extra-libs=/usr/local/lib
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" QTDIR="/usr/local/lib/qt5" QMAKE="/usr/local/lib/qt5/bin/qmake" MOC="/usr/local/lib/qt5/bin/moc" RCC="/usr/local/lib/qt5/bin/rcc" UIC="/usr/local/lib/qt5/bin/uic" QMAKESPEC="/usr/local/lib/qt5/mkspecs/freebsd-$(ccver="$(c++ --version)"; case "$ccver" in *clang*) echo clang ;; *) echo g++ ;; esac)" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ugene/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ugene/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" QT_BINDIR="lib/qt5/bin" QT_INCDIR="include/qt5" QT_LIBDIR="lib/qt5" QT_ARCHDIR="lib/qt5" QT_PLUGINDIR="lib/qt5/plugins" QT_LIBEXECDIR="libexec/qt5" QT_IMPORTDIR="lib/qt5/imports" QT_QMLDIR="lib/qt5/qml" QT_DATADIR="share/qt5" QT_DOCDIR="share/doc/qt5" QT_L10NDIR="share/qt5/translations" QT_EXAMPLEDIR="share/examples/qt5" QT_TESTDIR="share/qt5/tests" QT_MKSPECDIR="lib/qt5/mkspecs" QT_QTCHOOSERDIR="etc/xdg/qtchooser" DEBUG="@comment " OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/ugene/manuals" EXAMPLESDIR="share/examples/ugene" DATADIR="share/ugene" WWWDIR="www/ugene" ETCDIR="etc/ugene"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ugene DOCSDIR=/usr/local/share/ugene/manuals EXAMPLESDIR=/usr/local/share/examples/ugene WWWDIR=/usr/local/www/ugene ETCDIR=/usr/local/etc/ugene
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT= true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300030
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv2+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ugene-1.31.0_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-powerpc64-default-job-11] Installing pkg-1.10.5_5...
[head-powerpc64-default-job-11] Extracting pkg-1.10.5_5: .......... done
===> ugene-1.31.0_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ugene-1.31.0_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by ugene-1.31.0_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by ugene-1.31.0_1 for building
=> SHA256 Checksum OK for ugene/ugene-1.31.0.tar.gz.
=> SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by ugene-1.31.0_1 for building
===> Extracting for ugene-1.31.0_1
=> SHA256 Checksum OK for ugene/ugene-1.31.0.tar.gz.
=> SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf.
cp -f -p /portdistfiles/ugene/*.pdf /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/data/manuals
===========================================================================
<snip>
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/sitecon/sitecon.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/umuscle/umuscle.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/hmm2/hmm2.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/gor4/gor4.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/psipred/psipred.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/primer3/primer3.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/phylip/phylip.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/kalign/kalign.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/ptools/ptools.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/variants/variants.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/ngs_reads_classification/ngs_reads_classification.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/CoreTests/CoreTests.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/GUITestBase/GUITestBase.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/annotator/annotator.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/api_tests/api_tests.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/biostruct3d_view/biostruct3d_view.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/browser_support/browser_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/chroma_view/chroma_view.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/circular_view/circular_view.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/clark_support/clark_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dbi_bam/dbi_bam.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/diamond_support/diamond_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_export/dna_export.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_flexibility/dna_flexibility.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_graphpack/dna_graphpack.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_stat/dna_stat.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dotplot/dotplot.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/enzymes/enzymes.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/external_tool_support/external_tool_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/genome_aligner/genome_aligner.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/kraken_support/kraken_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/linkdata_support/linkdata_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/orf_marker/orf_marker.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/pcr/pcr.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/perf_monitor/perf_monitor.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/query_designer/query_designer.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/remote_blast/remote_blast.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/repeat_finder/repeat_finder.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/smith_waterman/smith_waterman.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/test_runner/test_runner.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/weight_matrix/weight_matrix.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/wevote_support/wevote_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/workflow_designer/workflow_designer.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/opencl_support/opencl_support.pro
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
/usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined.
===========================================================================
=======================<phase: build >============================
===> Building for ugene-1.31.0_1
cd src/libs_3rdparty/qscore/ && ( test -e Makefile || /usr/local/lib/qt5/bin/qmake -o Makefile /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/libs_3rdparty/qscore/qscore.pro INSTALL_PREFIX=/usr/local UGENE_INSTALL_DATA=/usr/local/share/ugene INSTALL_MANDIR=/usr/local/man LRELEASE=/usr/local/lib/qt5/bin/lrelease LUPDATE=/usr/local/lib/qt5/bin/lupdate -spec /usr/local/lib/qt5/mkspecs/freebsd-g++ QMAKE_CC=cc QMAKE_CXX=c++ QMAKE_LINK_C=cc QMAKE_LINK_C_SHLIB=cc QMAKE_LINK=c++ QMAKE_LINK_SHLIB=c++ 'QMAKE_CFLAGS=-O2 -pipe -fstack-protector-strong -fno-strict-aliasing ' 'QMAKE_CXXFLAGS=-O2 -pipe -fstack-protector-strong -fno-strict-aliasing ' 'QMAKE_LFLAGS= -fstack-protector-strong ' QMAKE_LIBS= QMAKE_CFLAGS_DEBUG= QMAKE_CFLAGS_RELEASE= QMAKE_CXXFLAGS_DEBUG= QMAKE_CXXFLAGS_RELEASE= PREFIX=/usr/local CONFIG+=release 'CONFIG-=debug separate_debug_info' ) && /usr/bin/make -f Makefile release
/usr/bin/make -f Makefile.Release
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=gnu++11 -w -pthread -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.31.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=31 -DUGENE_VER_PATCH=0 -DUGENE_X86 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DNDEBUG -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_XML_LIB -DQT_SCRIPT_LIB -DQT_CORE_LIB -I. -Isrc -I_tmp -I../../core/src -I../../include -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtNetwork -isystem /usr/local/include/qt5/QtXml -isystem /usr/local/include/qt5/QtScript -isystem /usr/local/include/qt5/QtCore -I_tmp/moc/release -isystem /usr/local/include/libdrm -isystem /usr/local/include -I/usr/local/lib/qt5/mkspecs/freebsd-g++ -o _tmp/obj/release/QScoreAdapter.o src/QScoreAdapter.cpp
cc1plus: error: unrecognized command line option "-std=gnu++11"
*** Error code 1
Stop.
make[3]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/libs_3rdparty/qscore
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/libs_3rdparty/qscore
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ugene
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