[package - head-amd64-default][science/py-phono3py] Failed for py27-phono3py-1.13.3.27_2 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu May 16 19:40:39 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: jbeich at FreeBSD.org
Ident: $FreeBSD: head/science/py-phono3py/Makefile 501030 2019-05-08 16:05:53Z jbeich $
Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p501607_s347555/logs/py27-phono3py-1.13.3.27_2.log
Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p501607_s347555
Log:
=>> Building science/py-phono3py
build started at Thu May 16 19:39:48 UTC 2019
port directory: /usr/ports/science/py-phono3py
package name: py27-phono3py-1.13.3.27_2
building for: FreeBSD head-amd64-default-job-17 13.0-CURRENT FreeBSD 13.0-CURRENT 1300025 amd64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/py-phono3py/Makefile 501030 2019-05-08 16:05:53Z jbeich $
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py27-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-amd64-default-job-17] Installing pkg-1.10.5_5...
[head-amd64-default-job-17] Extracting pkg-1.10.5_5: .......... done
===> py27-phono3py-1.13.3.27_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py27-phono3py-1.13.3.27_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-phono3py-1.13.3.27_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-phono3py-1.13.3.27_2 for building
=> SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-phono3py-1.13.3.27_2 for building
===> Extracting for py27-phono3py-1.13.3.27_2
=> SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py27-phono3py-1.13.3.27_2
===========================================================================
=======================<phase: build-depends >============================
===> py27-phono3py-1.13.3.27_2 depends on package: py27-numpy>0 - not found
===> Installing existing package /packages/All/py27-numpy-1.16.1_2,1.txz
[head-amd64-default-job-17] Installing py27-numpy-1.16.1_2,1...
[head-amd64-default-job-17] `-- Installing blas-3.5.0_5...
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The following catalogs are installed:
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The top level catalog for SGML stuff. It is not changed
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===> py27-phono3py-1.13.3.27_2 depends on package: py27-matplotlib>0 - found
===> Returning to build of py27-phono3py-1.13.3.27_2
===> py27-phono3py-1.13.3.27_2 depends on package: py27-phonopy>=1.13.2 - not found
===> Installing existing package /packages/All/py27-phonopy-2.1.3.txz
[head-amd64-default-job-17] Installing py27-phonopy-2.1.3...
[head-amd64-default-job-17] `-- Installing py27-yaml-5.1...
[head-amd64-default-job-17] `-- Extracting py27-yaml-5.1: .......... done
[head-amd64-default-job-17] Extracting py27-phonopy-2.1.3: .......... done
===> py27-phono3py-1.13.3.27_2 depends on package: py27-phonopy>=1.13.2 - found
===> Returning to build of py27-phono3py-1.13.3.27_2
===> py27-phono3py-1.13.3.27_2 depends on package: py27-yaml>0 - found
===> py27-phono3py-1.13.3.27_2 depends on file: /usr/local/include/lapacke.h - not found
===> Installing existing package /packages/All/lapacke-3.5.0_7.txz
[head-amd64-default-job-17] Installing lapacke-3.5.0_7...
[head-amd64-default-job-17] Extracting lapacke-3.5.0_7: .......... done
===> py27-phono3py-1.13.3.27_2 depends on file: /usr/local/include/lapacke.h - found
===> Returning to build of py27-phono3py-1.13.3.27_2
===> py27-phono3py-1.13.3.27_2 depends on executable: cython-2.7 - not found
===> Installing existing package /packages/All/py27-cython-0.29_1.txz
[head-amd64-default-job-17] Installing py27-cython-0.29_1...
[head-amd64-default-job-17] Extracting py27-cython-0.29_1: .......... done
===> py27-phono3py-1.13.3.27_2 depends on executable: cython-2.7 - found
===> Returning to build of py27-phono3py-1.13.3.27_2
===> py27-phono3py-1.13.3.27_2 depends on package: py27-setuptools>0 - found
===> py27-phono3py-1.13.3.27_2 depends on file: /usr/local/bin/python2.7 - found
===========================================================================
=======================<phase: lib-depends >============================
===> py27-phono3py-1.13.3.27_2 depends on shared library: libomp.so - found (/usr/lib/libomp.so)
===> py27-phono3py-1.13.3.27_2 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for py27-phono3py-1.13.3.27_2
setuptools is used.
running config
===========================================================================
=======================<phase: build >============================
===> Building for py27-phono3py-1.13.3.27_2
setuptools is used.
running build
running build_py
creating build
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py
copying phono3py/file_IO.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py
copying phono3py/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py
copying phono3py/version.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/create_supercells.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/translate_settings.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/phono3py_argparse.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/settings.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/create_force_constants.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/triplets_info.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/show_log.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/phono3py_yaml.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/other
copying phono3py/other/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/other
copying phono3py/other/alm_wrapper.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/other
copying phono3py/other/isotope.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/other
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon
copying phono3py/phonon/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon
copying phono3py/phonon/solver.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/collision_matrix.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/displacement_fc3.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/real_to_reciprocal.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/conductivity_LBTE.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/conductivity.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/gruneisen.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/interaction.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/imag_self_energy.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/frequency_shift.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/fc3.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/joint_dos.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/conductivity_RTA.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/triplets.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/reciprocal_to_normal.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
running build_ext
building 'phono3py._lapackepy' extension
creating build/temp.freebsd-13.0-CURRENT-amd64-2.7
creating build/temp.freebsd-13.0-CURRENT-amd64-2.7/c
creating build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/_lapackepy.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/_lapackepy.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/_lapackepy.c:38:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/dynmat.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/dynmat.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonon.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonon.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonoc_array.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonoc_array.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/harmonic/phonoc_array.c:36:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonoc_utils.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonoc_utils.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/harmonic/phonoc_utils.c:37:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/lapack_wrapper.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/lapack_wrapper.o -fopenmp -DMULTITHREADED_BLAS
cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/_lapackepy.o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/dynmat.o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonon.o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonoc_array.o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonoc_utils.o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/lapack_wrapper.o -L/usr/local/lib -lpython2.7 -o build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/_lapackepy.so -lgomp -lopenblas
ld: error: unable to find library -lgomp
cc: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'cc' failed with exit status 1
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-phono3py
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