[package - head-powerpc64-default][biology/freebayes] Failed for freebayes-1.2.0_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu May 16 18:49:23 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: head/biology/freebayes/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p501607_s347555/logs/freebayes-1.2.0_1.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p501607_s347555
Log:
=>> Building biology/freebayes
build started at Thu May 16 18:34:22 UTC 2019
port directory: /usr/ports/biology/freebayes
package name: freebayes-1.2.0_1
building for: FreeBSD head-powerpc64-default-job-16 13.0-CURRENT FreeBSD 13.0-CURRENT 1300025 powerpc
maintained by: jwb at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/freebayes/Makefile 487272 2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8-4-g701d8fe1
Host OSVERSION: 1300012
Jail OSVERSION: 1300025
Job Id: 16
!!! Jail is newer than host. (Jail: 1300025, Host: 1300012) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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UNAME_v=FreeBSD 13.0-CURRENT 1300025
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P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
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POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
jwb at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/freebayes/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/freebayes/work HOME=/wrkdirs/usr/ports/biology/freebayes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/freebayes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/freebayes/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/freebayes/work HOME=/wrkdirs/usr/ports/biology/freebayes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/freebayes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="gcc8" CFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing " CPP="cpp8" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -
L/usr/local/lib/gcc8 " LIBS="" CXX="g++8" CXXFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 --std=c++11 -Wl,-rpath=/usr/local/lib/gcc8 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/freebayes" EXAMPLESDIR="share/examples/freebayes" DATADIR="share/freebayes" WWWDIR="www/freebayes" ETCDIR="etc/freebayes"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/freebayes DOCSDIR=/usr/local/share/doc/freebayes EXAMPLESDIR=/usr/local/share/examples/freebayes WWWDIR=/usr/local/www/freebayes ETCDIR=/usr/local/etc/freebayes
--End SUB_LIST--
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PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
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# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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# Disable build of llib now that head no longer has lint(1)
LINT= true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300025
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> freebayes-1.2.0_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-powerpc64-default-job-16] Installing pkg-1.10.5_5...
[head-powerpc64-default-job-16] Extracting pkg-1.10.5_5: .......... done
===> freebayes-1.2.0_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of freebayes-1.2.0_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by freebayes-1.2.0_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by freebayes-1.2.0_1 for building
=> SHA256 Checksum OK for ekg-freebayes-v1.2.0_GH0.tar.gz.
=> SHA256 Checksum OK for walaj-SeqLib-5941c68_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-bwa-c02766e_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-fermi-lite-5bc90f8_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htslib-49fdfbd_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-bamtools-e77a43f_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-dbb4c51_GH0.tar.gz.
=> SHA256 Checksum OK for vcflib-vcflib-5e3ce04_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fastahack-c68cebb_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-filevercmp-1a9b779_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fsom-a6ef318_GH0.tar.gz.
=> SHA256 Checksum OK for google-googletest-d225acc_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-b704f19_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-multichoose-73d35da_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-smithwaterman-84c08d7_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-tabixpp-80012f8_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htslib-0f298ce_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
<snip>
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2138:47: error: expected ')' before 'pmask'
r = vec_perm (a, a, (__vector unsigned char)pmask);
^~~~~
)
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h: In function '_mm_shuffle_epi32':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2157:9: error: expected ';' before 't'
__v4su t;
^~
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2165:3: error: 't' undeclared (first use in this function)
t[3] = permute_selectors[element_selector_10] + 0x10101010;
^
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2170:37: error: expected ')' before '__A'
return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t);
^~~~
)
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2170:29: error: incompatible type for argument 1 of '__builtin_vec_perm'
return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t);
^~~~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2170:29: note: expected '__vector(4) int' but argument is of type 'int'
In file included from /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:62,
from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2170:19: error: too few arguments to function '__builtin_vec_perm'
return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t);
^~~~~~~~
In file included from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h: In function '_mm_maskmoveu_si128':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2176:9: error: expected ';' before 'hibit'
__v2du hibit = { 0x7f7f7f7f7f7f7f7fUL, 0x7f7f7f7f7f7f7f7fUL};
^~~~~~
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2177:10: error: expected ';' before 'mask'
__v16qu mask, tmp;
^~~~~
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2180:3: error: 'tmp' undeclared (first use in this function); did you mean 'mktemp'?
tmp = (__v16qu)_mm_loadu_si128(p);
^~~
mktemp
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2180:18: error: expected ';' before '_mm_loadu_si128'
tmp = (__v16qu)_mm_loadu_si128(p);
^~~~~~~~~~~~~~~
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2181:3: error: 'mask' undeclared (first use in this function)
mask = (__v16qu)vec_cmpgt ((__v16qu)__B, (__v16qu)hibit);
^~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2181:19: error: expected ';' before '__builtin_vec_cmpgt'
mask = (__v16qu)vec_cmpgt ((__v16qu)__B, (__v16qu)hibit);
^
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2182:32: error: expected ')' before '__A'
tmp = vec_sel (tmp, (__v16qu)__A, mask);
^~~
)
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h: In function '_mm_avg_epu8':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2189:38: error: expected ')' before '__A'
return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B);
^~~
)
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2189:29: error: incompatible type for argument 1 of '__builtin_vec_avg'
return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B);
^~~~~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2189:29: note: expected '__vector(4) int' but argument is of type 'unsigned char'
In file included from /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:62,
from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2189:20: error: too few arguments to function '__builtin_vec_avg'
return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B);
^~~~~~~
In file included from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h: In function '_mm_avg_epu16':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2195:37: error: expected ')' before '__A'
return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B);
^~~
)
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2195:29: error: incompatible type for argument 1 of '__builtin_vec_avg'
return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B);
^~~~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2195:29: note: expected '__vector(4) int' but argument is of type 'short unsigned int'
In file included from /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:62,
from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2195:20: error: too few arguments to function '__builtin_vec_avg'
return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B);
^~~~~~~
In file included from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h: In function '_mm_sad_epu8':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2202:10: error: expected ';' before 'a'
__v16qu a, b;
^~
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2203:10: error: expected ';' before 'vmin'
__v16qu vmin, vmax, vabsdiff;
^~~~~
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2204:9: error: expected ';' before 'vsum'
__v4si vsum;
^~~~~
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2205:16: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'zero'
const __v4su zero = { 0, 0, 0, 0 };
^~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2205:16: error: 'zero' undeclared (first use in this function)
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2205:23: error: expected expression before '{' token
const __v4su zero = { 0, 0, 0, 0 };
^
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2206:9: error: expected ';' before 'result'
__v4si result;
^~~~~~~
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2208:3: error: 'a' undeclared (first use in this function)
a = (__v16qu) __A;
^
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2208:16: error: expected ';' before '__A'
a = (__v16qu) __A;
^~~~
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2209:3: error: 'b' undeclared (first use in this function)
b = (__v16qu) __B;
^
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2209:16: error: expected ';' before '__B'
b = (__v16qu) __B;
^~~~
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2210:3: error: 'vmin' undeclared (first use in this function); did you mean 'void'?
vmin = vec_min (a, b);
^~~~
void
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2211:3: error: 'vmax' undeclared (first use in this function)
vmax = vec_max (a, b);
^~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2212:3: error: 'vabsdiff' undeclared (first use in this function)
vabsdiff = vec_sub (vmax, vmin);
^~~~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2214:3: error: 'vsum' undeclared (first use in this function)
vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
^~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2214:11: error: '__vector' undeclared (first use in this function); did you mean 'vector'?
vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
^~~~~~~~
vector
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2214:19: error: expected ')' before 'signed'
vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
~ ^~~~~~~
)
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2214:31: error: expected ';' before '__builtin_vec_sum4s'
vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
^
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2216:3: error: 'result' undeclared (first use in this function)
result = vec_sum2s (vsum, (__vector signed int) zero);
^~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2216:38: error: expected ')' before 'signed'
result = vec_sum2s (vsum, (__vector signed int) zero);
~ ^~~~~~~
)
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2216:50: error: expected ')' before 'zero'
result = vec_sum2s (vsum, (__vector signed int) zero);
^~~~~
)
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h: In function '_mm_cvtsi64_si128':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2314:3: error: can't convert a value of type 'long long int' to vector type '__vector(2) long long int' which has different size
return __extension__ (__m128i)(__v2di){ __A, 0LL };
^~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2314:41: error: expected ';' before '{' token
return __extension__ (__m128i)(__v2di){ __A, 0LL };
^
;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h: In function '_mm_cvtsi64x_si128':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2321:3: error: can't convert a value of type 'long long int' to vector type '__vector(2) long long int' which has different size
return __extension__ (__m128i)(__v2di){ __A, 0LL };
^~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd13.0/8.3.0/include/emmintrin.h:2321:41: error: expected ';' before '{' token
return __extension__ (__m128i)(__v2di){ __A, 0LL };
^
;
ksw.c: In function 'ksw_u8':
ksw.c:185:11: warning: implicit declaration of function '_mm_movemask_epi8'; did you mean '_mm_movemask_pi8'? [-Wimplicit-function-declaration]
cmp = _mm_movemask_epi8(_mm_cmpeq_epi8(_mm_subs_epu8(f, h), zero));
^~~~~~~~~~~~~~~~~
_mm_movemask_pi8
ksw.c:185:5: error: AltiVec argument passed to unprototyped function
cmp = _mm_movemask_epi8(_mm_cmpeq_epi8(_mm_subs_epu8(f, h), zero));
^~~
ksw.c: In function 'ksw_i16':
ksw.c:293:5: error: AltiVec argument passed to unprototyped function
if(UNLIKELY(!_mm_movemask_epi8(_mm_cmpgt_epi16(f, h)))) goto end_loop8;
^~
gmake[5]: *** [Makefile:26: ksw.o] Error 1
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib/bwa'
gmake[4]: *** [Makefile:358: all-recursive] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib'
gmake[3]: *** [Makefile:299: all] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib'
gmake[2]: *** [Makefile:53: ../SeqLib/src/libseqlib.a] Error 2
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/src'
gmake[1]: *** [Makefile:2: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/freebayes
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