[package - head-i386-default][science/nest] Failed for nest-2.16.0 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu May 16 10:52:24 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: head/science/nest/Makefile 501367 2019-05-12 08:24:10Z yuri $
Log URL: http://beefy11.nyi.freebsd.org/data/head-i386-default/p501607_s347555/logs/nest-2.16.0.log
Build URL: http://beefy11.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p501607_s347555
Log:
=>> Building science/nest
build started at Thu May 16 10:51:55 UTC 2019
port directory: /usr/ports/science/nest
package name: nest-2.16.0
building for: FreeBSD head-i386-default-job-09 13.0-CURRENT FreeBSD 13.0-CURRENT 1300025 i386
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/nest/Makefile 501367 2019-05-12 08:24:10Z yuri $
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===> Use 'make config' to modify these settings
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> nest-2.16.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-i386-default-job-09] Installing pkg-1.10.5_5...
[head-i386-default-job-09] Extracting pkg-1.10.5_5: .......... done
===> nest-2.16.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of nest-2.16.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
=> nest-nest-simulator-v2.16.0_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/nest/nest-simulator/tar.gz/v2.16.0?dummy=/nest-nest-simulator-v2.16.0_GH0.tar.gz
fetch: https://codeload.github.com/nest/nest-simulator/tar.gz/v2.16.0?dummy=/nest-nest-simulator-v2.16.0_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/nest/nest-simulator/tar.gz/v2.16.0?dummy=/nest-nest-simulator-v2.16.0_GH0.tar.gz: size of remote file is not known
nest-nest-simulator-v2.16.0_GH0.tar.gz 6572 kB 11 MBps 00s
===> Fetching all distfiles required by nest-2.16.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by nest-2.16.0 for building
=> SHA256 Checksum OK for nest-nest-simulator-v2.16.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by nest-2.16.0 for building
<snip>
-- Found PythonInterp: /usr/local/bin/python3.6 (found version "3.6.8")
-- Found PythonLibs: /usr/local/lib/libpython3.6m.so (found suitable exact version "3.6.8")
-- Found Cython: /usr/local/bin/cython-3.6 (found version "0.29")
-- Found OpenMP_C: -fopenmp=libomp (found version "3.1")
-- Found OpenMP_CXX: -fopenmp=libomp (found version "3.1")
-- Found OpenMP: TRUE (found version "3.1")
-- Check the abort exitcode.
-- Check the abort exitcode. 134
-- Check the segmentation fault exitcode.
-- Check the segmentation fault exitcode. 139
-- Check whether the compiler ignores cmath makros.
-- Check whether the compiler ignores cmath makros. OFF
-- Check whether the compiler does NOT include <*.h> headers ISO conformant.
-- Check whether the compiler does NOT include <*.h> headers ISO conformant. OFF
-- Check whether the compiler respects symbolic signal names in signal.h.
-- Check whether the compiler respects symbolic signal names in signal.h. OFF
-- Check static template member declaration.
-- Check static template member declaration. OFF
-- Check for STL vector capacity base unity.
-- Check for STL vector capacity base unity. ON
-- Check for STL vector capacity doubling strategy.
-- Check for STL vector capacity doubling strategy. ON
-- Check whether the compiler fails with ICE.
-- Check whether the compiler fails with ICE. OFF
-- Check if ::nan is available from cmath.
-- Check if ::nan is available from cmath. ON
-- Check if ::isnan is available from cmath.
-- Check if ::isnan is available from cmath. ON
-- Found PythonLibs: /usr/local/lib/libpython3.6m.so (found version "3.6.8")
--------------------------------------------------------------------------------
NEST Configuration Summary
--------------------------------------------------------------------------------
Build type : Release
Target System : FreeBSD
Cross Compiling : FALSE
C compiler : /usr/bin/cc
C compiler flags : -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -Wall -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing
C++ compiler : /usr/bin/c++
C++ compiler flags : -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -Wall -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing
Build dynamic : ON
Built-in modules : models;precise;topology
User modules : None
Python bindings : Yes (Python 3.6.8: /usr/local/bin/python3.6)
Includes : /usr/local/include/python3.6m
Libraries : /usr/local/lib/libpython3.6m.so
Cython bindings : Yes (Cython 0.29: /usr/local/bin/cython-3.6)
Use threading : Yes (OpenMP: -fopenmp=libomp)
Use GSL : Yes (GSL 2.5)
Includes : /usr/local/include
Libraries : /usr/local/lib/libgsl.so;/usr/local/lib/libgslcblas.so
Use Readline : Yes (GNU Readline 8.0)
Includes : /usr/local/include
Libraries : /usr/local/lib/libreadline.so;/usr/lib/libncurses.so
Use libltdl : Yes (LTDL )
Includes : /usr/local/include
Libraries : /usr/local/lib/libltdl.so
Use doxygen : No
Use MPI : No
Use MUSIC : No
Use libneurosim : No
Use Boost : No
--------------------------------------------------------------------------------
The NEST executable will be installed to:
/usr/local/bin/
Documentation and examples will be installed to:
/usr/local/share/doc/nest/
PyNEST will be installed to:
/usr/local/lib/python3.6/site-packages
To set necessary environment variables, add the following line
to your ~/.bashrc :
source /usr/local/bin/nest_vars.sh
--------------------------------------------------------------------------------
You can now build and install NEST with
make
make install
make installcheck
If you experience problems with the installation or the use of NEST,
please see http://www.nest-simulator.org/frequently_asked_questions
or go to http://www.nest-simulator.org/community to find out how to
join the user mailing list.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
BOOST_PYTHON_SUFFIX
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_VERBOSE_MAKEFILE
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/science/nest/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for nest-2.16.0
[1/246] /usr/bin/c++ -Dmodels_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/libnestutil -Ilibnestutil -I/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/librandom -I/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/sli -I/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -Wall -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -MD -MT models/CMakeFiles/models.dir/iaf_cond_exp_sfa_rr.cpp.o -MF models/CMakeFiles/models.dir/iaf_cond_exp_sfa_rr.cpp.o.d -o models/CMakeFiles/models.dir/iaf_cond_exp_sfa_rr.cpp.o -c /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/models/iaf_cond_exp_sfa_rr.cpp
FAILED: models/CMakeFiles/models.dir/iaf_cond_exp_sfa_rr.cpp.o
/usr/bin/c++ -Dmodels_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/libnestutil -Ilibnestutil -I/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/librandom -I/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/sli -I/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -Wall -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -MD -MT models/CMakeFiles/models.dir/iaf_cond_exp_sfa_rr.cpp.o -MF models/CMakeFiles/models.dir/iaf_cond_exp_sfa_rr.cpp.o.d -o models/CMakeFiles/models.dir/iaf_cond_exp_sfa_rr.cpp.o -c /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/models/iaf_cond_exp_sfa_rr.cpp
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/models/iaf_cond_exp_sfa_rr.cpp:24:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/models/iaf_cond_exp_sfa_rr.h:38:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connection.h:29:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connector_base_impl.h:23:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connector_base.h:46:
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/source.h:43:17: warning: width of bit-field 'gid_' (62 bits) exceeds the width of its type; value will be truncated to 32 bits [-Wbitfield-width]
unsigned long gid_ : 62; //!< gid of source
^
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/source.h:47:62: warning: implicit conversion from 'long long' to 'const size_t' (aka 'const unsigned int') changes value from 4611686018427387903 to 4294967295 [-Wconstant-conversion]
static const size_t disabled_marker_ = 4611686018427387904 - 1; // 2 ** 62 - 1
~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~^~~
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/models/iaf_cond_exp_sfa_rr.cpp:24:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/models/iaf_cond_exp_sfa_rr.h:38:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connection.h:29:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connector_base_impl.h:26:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/kernel_manager.h:27:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connection_manager.h:41:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/source_table.h:35:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/mpi_manager.h:49:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target_data.h:32:
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target.h:48:42: warning: implicit conversion from 'long long' to 'const unsigned long' changes value from 140737354137600 to 4160749568 [-Wconstant-conversion]
static const unsigned long rank_mask = 0x00007FFFF8000000;
~~~~~~~~~ ^~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target.h:49:41: warning: implicit conversion from 'long long' to 'const unsigned long' changes value from 143974450587500544 to 0 [-Wconstant-conversion]
static const unsigned long tid_mask = 0x01FF800000000000;
~~~~~~~~ ^~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target.h:50:44: warning: implicit conversion from 'long long' to 'const unsigned long' changes value from 9079256848778919936 to 0 [-Wconstant-conversion]
static const unsigned long syn_id_mask = 0x7E00000000000000;
~~~~~~~~~~~ ^~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target.h:51:47: warning: implicit conversion from 'unsigned long long' to 'const unsigned long' changes value from 9223372036854775808 to 0 [-Wconstant-conversion]
static const unsigned long processed_mask = 0x8000000000000000;
~~~~~~~~~~~~~~ ^~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target.h:135:9: error: no type named 'success' in 'nest::StaticAssert<false>'; did you mean 'StaticAssert<true>::success'?
typedef StaticAssert< sizeof( Target ) == 8 >::success success_target_size;
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
StaticAssert<true>::success
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/static_assert.h:53:10: note: 'StaticAssert<true>::success' declared here
struct success
^
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/models/iaf_cond_exp_sfa_rr.cpp:24:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/models/iaf_cond_exp_sfa_rr.h:38:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connection.h:29:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connector_base_impl.h:26:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/kernel_manager.h:27:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connection_manager.h:41:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/source_table.h:35:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/mpi_manager.h:49:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target_data.h:32:
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target.h:201:45: warning: shift count >= width of type [-Wshift-count-overflow]
| ( static_cast< unsigned long >( tid ) << tid_shift );
^ ~~~~~~~~~
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target.h:207:31: warning: shift count >= width of type [-Wshift-count-overflow]
return ( data_ & tid_mask ) >> tid_shift;
^ ~~~~~~~~~
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target.h:215:48: warning: shift count >= width of type [-Wshift-count-overflow]
| ( static_cast< unsigned long >( syn_id ) << syn_id_shift );
^ ~~~~~~~~~~~~
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target.h:221:34: warning: shift count >= width of type [-Wshift-count-overflow]
return ( data_ & syn_id_mask ) >> syn_id_shift;
^ ~~~~~~~~~~~~
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target.h:228:51: warning: shift count >= width of type [-Wshift-count-overflow]
| ( static_cast< unsigned long >( processed ) << processed_shift );
^ ~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/target.h:234:37: warning: shift count >= width of type [-Wshift-count-overflow]
return ( data_ & processed_mask ) >> processed_shift;
^ ~~~~~~~~~~~~~~~
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/models/iaf_cond_exp_sfa_rr.cpp:24:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/models/iaf_cond_exp_sfa_rr.h:38:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connection.h:29:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connector_base_impl.h:26:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/kernel_manager.h:27:
In file included from /wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/connection_manager.h:41:
/wrkdirs/usr/ports/science/nest/work/nest-simulator-2.16.0/nestkernel/source_table.h:470:22: warning: result of comparison of constant 72057594037927936 with expression of type 'const nest::index' (aka 'const unsigned int') is always true [-Wtautological-constant-out-of-range-compare]
assert( source_gid < 72057594037927936 );
~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
/usr/include/assert.h:56:21: note: expanded from macro 'assert'
#define assert(e) ((e) ? (void)0 : __assert(__func__, __FILE__, \
^
13 warnings and 1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/nest
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