[package - 120armv6-quarterly][science/afni] Failed for afni-2015.11.13_8 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu May 16 10:03:20 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: branches/2019Q2/science/afni/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL: http://beefy15.nyi.freebsd.org/data/120armv6-quarterly/501102/logs/afni-2015.11.13_8.log
Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=120armv6-quarterly&build=501102
Log:
=>> Building science/afni
build started at Thu May 16 10:00:06 UTC 2019
port directory: /usr/ports/science/afni
package name: afni-2015.11.13_8
building for: FreeBSD 120armv6-quarterly-job-08 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 arm
maintained by: jwb at FreeBSD.org
Makefile ident: $FreeBSD: branches/2019Q2/science/afni/Makefile 487272 2018-12-12 01:35:33Z gerald $
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> afni-2015.11.13_8 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[120armv6-quarterly-job-08] Installing pkg-1.10.5_5...
[120armv6-quarterly-job-08] Extracting pkg-1.10.5_5: .......... done
===> afni-2015.11.13_8 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of afni-2015.11.13_8
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-2015.11.13_8 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-2015.11.13_8 for building
=> SHA256 Checksum OK for afni-2015.11.13.tar.xz.
===========================================================================
<snip>
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG error.c
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG -DVERSION=`cat ../VERSION` libvers.c
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG nc.c
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG ncio.c
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG ncx.c
gm4 -B10000 putget.m4 >putget.c
gm4: warning: `m4 -B' may be removed in a future release
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG putget.c
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG string.c
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG v1hpg.c
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG v2i.c
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I. -DLIBICONV_PLUG var.c
ar cru libnetcdf.a attr.o dim.o error.o libvers.o nc.o ncio.o ncx.o putget.o string.o v1hpg.o v2i.o var.o
ranlib libnetcdf.a
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
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gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc'
rm -f *.o *.a *.so *.sl *.i *.Z core t_ncio.o t_ncio t_ncx.o t_ncx t_ncxx.o t_ncxx t_nc.o t_nc test.nc *.so
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
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Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nctest
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nctest'
rm -f *.o *.a *.so *.sl *.i *.Z core nctest lint.out test.nc test2.nc times
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nctest'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
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Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nc_test
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nc_test'
rm -f *.o *.a *.so *.sl *.i *.Z core nc_test test.nc scratch.nc lint.out times
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nc_test'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
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Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/fortran
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/fortran'
rm -f *.o *.a *.so *.sl *.i *.Z core copy.nc ftest ftest.f77 test.nc
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/fortran'
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Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/f90
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/f90'
rm -f *.o *.a *.so *.sl *.i *.Z core netcdf_test *.mod example.nc example.cdl
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/f90'
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gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
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Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nf_test
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nf_test'
rm -f *.o *.a *.so *.sl *.i *.Z core times lint.out nf_test scratch.nc *.f77
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nf_test'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncdump
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncdump'
rm -f *.o *.a *.so *.sl *.i *.Z core ncdump test0.nc test1.nc test1.cdl test2.cdl
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncdump'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncgen
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncgen'
rm -f *.o *.a *.so *.sl *.i *.Z core ncgen netcdf.inc c0.nc c1.cdl c1.nc c2.cdl f0.nc ctest.c ctest ctest0.nc ctest1.cdl ftest.f ftest ftest0.nc ftest1.cdl
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncgen'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/cxx
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/cxx'
rm -f *.o *.a *.so *.sl *.i *.Z core nctst test.out example.nc *.cps *.dvi *.fns *.log *~ *.gs *.aux *.cp *.fn *.ky *.pg *.toc *.tp *.vr
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/cxx'
Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
rm -f *.o *.a *.so *.sl *.i *.Z core
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
/bin/rm -f thd_mincread.o
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c thd_mincread.c -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
/bin/rm -f suma_afni_surface.o
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_afni_surface.c -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
/bin/rm -f suma_datasets.o
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_datasets.c -o suma_datasets.o -ISUMA/ -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
suma_datasets.c:2619:11: warning: implicit declaration of function 'SUMA_GetDsetNodeIndexColRange_eng' is invalid in C99 [-Wimplicit-function-declaration]
return(SUMA_GetDsetNodeIndexColRange_eng(
^
suma_datasets.c:10615:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) {
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
suma_datasets.c:10615:18: note: place parentheses around the assignment to silence this warning
if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) {
^
( )
suma_datasets.c:10615:18: note: use '==' to turn this assignment into an equality comparison
if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) {
^
==
suma_datasets.c:13921:4: warning: implicit declaration of function 'selenium_close' is invalid in C99 [-Wimplicit-function-declaration]
selenium_close(); /* close any selenium opened browser windows if open */
^
suma_datasets.c:14896:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
if (!((tt = (1+sqrt(1+8*nseg))/2.0) == (int)tt)) {
^ ~~
suma_datasets.c:14903:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
if (!((tt = (-1+sqrt(1+8*nseg))/2.0) == (int)tt)) {
^ ~~
suma_datasets.c:14910:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
if (!((tt = sqrt(SDSET_VECLEN(dset))) == (int)tt)) {
^ ~~
suma_datasets.c:14931:32: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
((!i0 && !i1) && (tt = (1+sqrt(1+8*nseg))/2.0) == (int)tt)) {
^ ~~
suma_datasets.c:14946:39: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
((!i0 && !i1) && (tt = (-1+sqrt(1+8*nseg))/2.0) == (int)tt)) {
^ ~~
suma_datasets.c:14964:39: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
((!i0 && !i1) && (tt = sqrt(SDSET_VECLEN(dset))) == (int)tt)) {
^ ~~
suma_datasets.c:15031:17: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
if ((tt=SDSET_VECLEN(dset)/(msz[0]*msz[1])) != (int)tt) {
^ ~~
suma_datasets.c:16329:26: warning: equality comparison result unused [-Wunused-comparison]
dset->Aux->isGraph == TRACT_DSET;
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
suma_datasets.c:16329:26: note: use '=' to turn this equality comparison into an assignment
dset->Aux->isGraph == TRACT_DSET;
^~
=
suma_datasets.c:16381:26: warning: equality comparison result unused [-Wunused-comparison]
dset->Aux->isGraph == CIFTI_DSET;
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
suma_datasets.c:16381:26: note: use '=' to turn this equality comparison into an assignment
dset->Aux->isGraph == CIFTI_DSET;
^~
=
suma_datasets.c:16386:26: warning: equality comparison result unused [-Wunused-comparison]
dset->Aux->isGraph == CIFTI_DSET;
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
suma_datasets.c:16386:26: note: use '=' to turn this equality comparison into an assignment
dset->Aux->isGraph == CIFTI_DSET;
^~
=
13 warnings generated.
/bin/rm -f suma_utils.o
/nxb-bin/usr/bin/cc -O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_utils.c -o suma_utils.o -ISUMA/ -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
suma_utils.c:3043:10: error: statement requires expression of scalar type ('va_list' (aka '__builtin_va_list') invalid)
if (vararg_ptr) {
^ ~~~~~~~~~~
1 error generated.
gmake[1]: *** [Makefile.INCLUDE:1795: suma_utils.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13'
*** Error code 1
Stop.
make: stopped in /usr/ports/science/afni
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