[package - head-amd64-default][science/abinit] Failed for abinit-8.10.3_3 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu May 16 06:22:07 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: jbeich at FreeBSD.org
Ident: $FreeBSD: head/science/abinit/Makefile 501030 2019-05-08 16:05:53Z jbeich $
Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p501607_s347555/logs/abinit-8.10.3_3.log
Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p501607_s347555
Log:
=>> Building science/abinit
build started at Thu May 16 06:21:47 UTC 2019
port directory: /usr/ports/science/abinit
package name: abinit-8.10.3_3
building for: FreeBSD head-amd64-default-job-21 13.0-CURRENT FreeBSD 13.0-CURRENT 1300025 amd64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/abinit/Makefile 501030 2019-05-08 16:05:53Z jbeich $
Poudriere version: 3.2.8-4-g701d8fe1
Host OSVERSION: 1300018
Jail OSVERSION: 1300025
Job Id: 21
!!! Jail is newer than host. (Jail: 1300025, Host: 1300018) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1300025
UNAME_v=FreeBSD 13.0-CURRENT 1300025
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-4-g701d8fe1
MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for abinit-8.10.3_3:
MPI=on: MPI (Message Passing Interface) support
OPENMP=on: Parallel processing support via OpenMP
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--enable-shared --disable-static --enable-mpi --enable-openmp --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
CC_LDFLAGS=" /usr/local/lib/libmpich.so /usr/local/lib/libmpicxx.so /usr/local/lib/libmpifort.so /usr/local/lib/libomp.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " CXX_LDFLAGS=" /usr/local/lib/libmpich.so /usr/local/lib/libmpicxx.so /usr/local/lib/libmpifort.so /usr/local/lib/libomp.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " FC_LDFLAGS=" /usr/local/lib/libmpich.so /usr/local/lib/libmpicxx.so /usr/local/lib/libmpifort.so /usr/local/lib/libomp.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " F77="gfortran8" FC="gfortran8" FFLAGS="-O -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-ffree-line-length-none -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/abinit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/scien
ce/abinit/work HOME=/wrkdirs/usr/ports/science/abinit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/abinit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran8" FC="gfortran8" FFLAGS="-O -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-ffree-line-length-none -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/abinit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/abinit/work HOME=/wrkdirs/usr/ports/science/abinit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/abinit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fst
ack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" /usr/local/lib/libmpich.so /usr/local/lib/libmpicxx.so /usr/local/lib/libmpifort.so /usr/local/lib/libomp.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/abinit" EXAMPLESDIR="share/examples/abinit" DATADIR="share/abinit" WWWDIR="www/abinit" ETCDIR="etc/abinit"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/abinit DOCSDIR=/usr/local/share/doc/abinit EXAMPLESDIR=/usr/local/share/examples/abinit WWWDIR=/usr/local/www/abinit ETCDIR=/usr/local/etc/abinit
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT= true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=amd64
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300025
PYTHONBASE=/usr/local
HAVE_COMPAT_IA32_KERN=YES
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> abinit-8.10.3_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-amd64-default-job-21] Installing pkg-1.10.5_5...
[head-amd64-default-job-21] Extracting pkg-1.10.5_5: .......... done
===> abinit-8.10.3_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of abinit-8.10.3_3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by abinit-8.10.3_3 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by abinit-8.10.3_3 for building
=> SHA256 Checksum OK for abinit-8.10.3.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by abinit-8.10.3_3 for building
===> Extracting for abinit-8.10.3_3
=> SHA256 Checksum OK for abinit-8.10.3.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for abinit-8.10.3_3
===> Applying FreeBSD patches for abinit-8.10.3_3
===========================================================================
=======================<phase: build-depends >============================
===> abinit-8.10.3_3 depends on executable: gfortran8 - not found
===> Installing existing package /packages/All/gcc8-8.3.0_2.txz
[head-amd64-default-job-21] Installing gcc8-8.3.0_2...
[head-amd64-default-job-21] `-- Installing binutils-2.32,1...
[head-amd64-default-job-21] | `-- Installing gettext-runtime-0.19.8.1_2...
[head-amd64-default-job-21] | | `-- Installing indexinfo-0.3.1...
[head-amd64-default-job-21] | | `-- Extracting indexinfo-0.3.1: .... done
[head-amd64-default-job-21] | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
[head-amd64-default-job-21] `-- Extracting binutils-2.32,1: .......... done
[head-amd64-default-job-21] `-- Installing gmp-6.1.2_1...
[head-amd64-default-job-21] `-- Extracting gmp-6.1.2_1: .......... done
[head-amd64-default-job-21] `-- Installing mpc-1.1.0_2...
[head-amd64-default-job-21] | `-- Installing mpfr-4.0.2...
[head-amd64-default-job-21] | `-- Extracting mpfr-4.0.2: .......... done
[head-amd64-default-job-21] `-- Extracting mpc-1.1.0_2: ......... done
[head-amd64-default-job-21] Extracting gcc8-8.3.0_2: .......... done
Message from gcc8-8.3.0_2:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc8
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> abinit-8.10.3_3 depends on executable: gfortran8 - found
===> Returning to build of abinit-8.10.3_3
===> abinit-8.10.3_3 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.2.1_3.txz
[head-amd64-default-job-21] Installing gmake-4.2.1_3...
[head-amd64-default-job-21] Extracting gmake-4.2.1_3: .......... done
===> abinit-8.10.3_3 depends on executable: gmake - found
===> Returning to build of abinit-8.10.3_3
===> abinit-8.10.3_3 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> abinit-8.10.3_3 depends on shared library: liblapack.so - not found
===> Installing existing package /packages/All/lapack-3.5.0_7.txz
[head-amd64-default-job-21] Installing lapack-3.5.0_7...
[head-amd64-default-job-21] `-- Installing blas-3.5.0_5...
[head-amd64-default-job-21] `-- Extracting blas-3.5.0_5: ....... done
[head-amd64-default-job-21] Extracting lapack-3.5.0_7: .......... done
===> abinit-8.10.3_3 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so)
===> Returning to build of abinit-8.10.3_3
===> abinit-8.10.3_3 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so)
===> abinit-8.10.3_3 depends on shared library: libmpi.so - not found
===> Installing existing package /packages/All/mpich-3.2.1_4.txz
[head-amd64-default-job-21] Installing mpich-3.2.1_4...
[head-amd64-default-job-21] `-- Installing hwloc-1.11.11...
[head-amd64-default-job-21] | `-- Installing libpciaccess-0.13.5...
[head-amd64-default-job-21] | | `-- Installing pciids-20190418...
[head-amd64-default-job-21] | | `-- Extracting pciids-20190418: ..... done
[head-amd64-default-job-21] | `-- Extracting libpciaccess-0.13.5: ......... done
[head-amd64-default-job-21] | `-- Installing libxml2-2.9.8...
[head-amd64-default-job-21] | `-- Extracting libxml2-2.9.8: .......... done
[head-amd64-default-job-21] `-- Extracting hwloc-1.11.11: .......... done
[head-amd64-default-job-21] Extracting mpich-3.2.1_4: .......... done
Message from mpich-3.2.1_4:
===> NOTICE:
The mpich port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> abinit-8.10.3_3 depends on shared library: libmpi.so - found (/usr/local/lib/libmpi.so)
===> Returning to build of abinit-8.10.3_3
===> abinit-8.10.3_3 depends on shared library: libomp.so - found (/usr/lib/libomp.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for abinit-8.10.3_3
configure: loading site script /usr/ports/Templates/config.site
==============================================================================
=== Overall startup ===
==============================================================================
checking build system type... amd64-portbld-freebsd13.0
checking host system type... amd64-portbld-freebsd13.0
checking target system type... amd64-portbld-freebsd13.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking whether gmake supports nested variables... yes
checking whether UID '0' is supported by ustar format... yes
checking whether GID '0' is supported by ustar format... yes
checking how to create a ustar tar archive... (cached) /usr/bin/tar
checking whether gmake sets $(MAKE)... (cached) yes
checking whether ln -s works... yes
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for gawk... (cached) /usr/bin/awk
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for realpath,readlink... no
configure: not loading options (no config file available)
==============================================================================
=== Build-system information ===
==============================================================================
configure: ABINIT version 8.10.3
configure: M4 010416 - Autoconf 026900 - Automake 011304 - Libtool 020402
configure: reporting user interface changes:
configure: * new option --enable-triqs-v1-4 is available
configure: * new option --enable-triqs-v2-0 is available
configure: * new option --enable-xml is available
==============================================================================
=== Option consistency checking ===
==============================================================================
configure: checking consistency of library-related options
configure: |---> all OK
configure:
configure: checking consistency of experimental options
configure: |---> all OK
configure:
configure: checking consistency of maintainer options
configure: |---> all OK
configure:
configure: parsing command-line options
==============================================================================
=== Multicore architecture startup ===
==============================================================================
configure: Initializing MPI support
configure: compiler checks deferred
configure: GPU support disabled from command-line
==============================================================================
=== Utilities ===
==============================================================================
checking for sh... /bin/sh
checking for mv... /bin/mv
checking for perl... /bin/false
checking for rm... /bin/rm
checking for patch... patch
checking for tar... tar
==============================================================================
=== C support ===
==============================================================================
checking for cc... /usr/bin/cc
checking for gcc... cc
checking whether the C compiler works... no
configure: error: in `/wrkdirs/usr/ports/science/abinit/work/abinit-8.10.3':
configure: error: C compiler cannot create executables
See `config.log' for more details
===> Script "configure" failed unexpectedly.
Please report the problem to yuri at FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/science/abinit/work/abinit-8.10.3/config.log" including
the output of the failure of your make command. Also, it might be a good idea
to provide an overview of all packages installed on your system (e.g. a
/usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1
Stop.
make: stopped in /usr/ports/science/abinit
More information about the freebsd-pkg-fallout
mailing list