[package - head-armv6-default][math/suitesparse] Failed for suitesparse-5.2.0_3 in build/runaway
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Mon May 13 19:23:15 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: fortran at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: head/math/suitesparse/Makefile 499638 2019-04-22 13:16:33Z gerald $
Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p501147_s347407/logs/suitesparse-5.2.0_3.log
Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p501147_s347407
Log:
=>> Building math/suitesparse
build started at Mon May 13 12:46:24 UTC 2019
port directory: /usr/ports/math/suitesparse
package name: suitesparse-5.2.0_3
building for: FreeBSD head-armv6-default-job-01 13.0-CURRENT FreeBSD 13.0-CURRENT 1300024 arm
maintained by: fortran at FreeBSD.org
Makefile ident: $FreeBSD: head/math/suitesparse/Makefile 499638 2019-04-22 13:16:33Z gerald $
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===> The following configuration options are available for suitesparse-5.2.0_3:
====> Options available for the radio BLAS: you can only select none or one of them
OPENBLAS=on: OpenBLAS blas implementation
NETLIB=off: Blas implementation from Netlib
ATLAS=off: ATLAS blas implementation
===> Use 'make config' to modify these settings
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=======================<phase: check-sanity >============================
===> License GPLv2 LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> suitesparse-5.2.0_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-armv6-default-job-01] Installing pkg-1.10.5_5...
[head-armv6-default-job-01] Extracting pkg-1.10.5_5: .......... done
===> suitesparse-5.2.0_3 depends on file: /usr/local/sbin/pkg - found
<snip>
gmake install INSTALL=/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse
gmake[5]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CHOLMOD/Lib'
gmake[5]: Nothing to be done for 'install'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CHOLMOD/Lib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CHOLMOD/Lib'
( cd ../../AMD ; gmake library )
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/AMD'
( cd Lib ; gmake )
gmake[5]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/AMD/Lib'
gmake install INSTALL=/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse
gmake[6]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/AMD/Lib'
gmake[6]: Nothing to be done for 'install'.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/AMD/Lib'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/AMD/Lib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/AMD'
( cd ../../COLAMD ; gmake library )
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/COLAMD'
( cd Lib ; gmake )
gmake[5]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/COLAMD/Lib'
gmake install INSTALL=/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse
gmake[6]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/COLAMD/Lib'
gmake[6]: Nothing to be done for 'install'.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/COLAMD/Lib'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/COLAMD/Lib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/COLAMD'
( cd ../../CCOLAMD ; gmake library )
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD'
( cd Lib ; gmake )
gmake[5]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD/Lib'
gmake install INSTALL=/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse
gmake[6]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD/Lib'
gmake[6]: Nothing to be done for 'install'.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD/Lib'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD/Lib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD'
( cd ../../CAMD ; gmake library )
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CAMD'
( cd Lib ; gmake )
gmake[5]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CAMD/Lib'
gmake install INSTALL=/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse
gmake[6]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CAMD/Lib'
gmake[6]: Nothing to be done for 'install'.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CAMD/Lib'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CAMD/Lib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/CAMD'
gcc8 -O2 -pipe -I/usr/local/include -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -O3 -fexceptions -fPIC -fopenmp -o cholmod_demo -I../../include cholmod_demo.c -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -L../../lib -lcholmod -lamd -lcolamd -lsuitesparseconfig -lccolamd -lcamd -L/usr/local/lib -lmetis -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -llapack -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -
Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -lopenblasp -lm
gcc8 -O2 -pipe -I/usr/local/include -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -O3 -fexceptions -fPIC -fopenmp -o cholmod_l_demo -I../../include cholmod_l_demo.c -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -L../../lib -lcholmod -lamd -lcolamd -lsuitesparseconfig -lccolamd -lcamd -L/usr/local/lib -lmetis -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -llapack -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/l
ib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -lopenblasp -lm
gcc8 -O2 -pipe -I/usr/local/include -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing -O3 -fexceptions -fPIC -fopenmp -o cholmod_simple -I../../include cholmod_simple.c -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -L../../lib -lcholmod -lamd -lcolamd -lsuitesparseconfig -lccolamd -lcamd -L/usr/local/lib -lmetis -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -llapack -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/l
ib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -lopenblasp -lm
./cholmod_demo < Matrix/bcsstk01.tri
---------------------------------- cholmod_demo:
cholmod version 3.0.12
SuiteSparse version 5.2.0
norm (A,inf) = 3.57095e+09
norm (A,1) = 3.57095e+09
CHOLMOD sparse: A: 48-by-48, nz 224, upper. OK
CHOLMOD dense: B: 48-by-1, OK
bnorm 1.97917
Analyze: flop 6009 lnz 489
Factorizing A
CHOLMOD factor: L: 48-by-48 simplicial, LDL'. nzmax 489. nz 489 OK
Ordering: AMD fl/lnz 12.3 lnz/anz 2.2
ints in L: 782, doubles in L: 489
factor flops 6009 nnz(L) 489 (w/no amalgamation)
nnz(A*A'): 224
flops / nnz(L): 12.3
nnz(L) / nnz(A): 2.2
analyze cputime: 0.0000
factor cputime: 0.0000 mflop: 0.0
solve cputime: 0.0000 mflop: 0.0
overall cputime: 0.0000 mflop: 0.0
solve cputime: 0.0000 mflop: 0.0 (100 trials)
solve2 cputime: 0.0000 mflop: 0.0 (100 trials)
peak memory usage: 0 (MB)
residual (|Ax-b|/(|A||x|+|b|)): 2.54e-19 4.93e-19 4.93e-19 5.89e-15
residual 5.9e-05 (|Ax-b|/(|A||x|+|b|)) after iterative refinement
rcond 9.5e-06
./cholmod_l_demo < Matrix/bcsstk01.tri
---------------------------------- cholmod_l_demo:
cholmod version 3.0.12
SuiteSparse version 5.2.0
norm (A,inf) = 3.57095e+09
norm (A,1) = 3.57095e+09
CHOLMOD sparse: A: 48-by-48, nz 224, upper. OK
CHOLMOD dense: B: 48-by-1, OK
bnorm 1.97917
Analyze: flop 6009 lnz 489
Factorizing A
CHOLMOD factor: L: 48-by-48 simplicial, LDL'. nzmax 489. nz 489 OK
nmethods: 3
Ordering: AMD fl/lnz 12.3 lnz/anz 2.2
ints in L: 782, doubles in L: 489
factor flops 6009 nnz(L) 489 (w/no amalgamation)
nnz(A*A'): 224
flops / nnz(L): 12.3
nnz(L) / nnz(A): 2.2
analyze cputime: 0.0000
factor cputime: 0.0000 mflop: 0.0
solve cputime: 0.0000 mflop: 0.0
overall cputime: 0.0000 mflop: 0.0
solve cputime: 0.0000 mflop: 0.0 (100 trials)
solve2 cputime: 0.0000 mflop: 0.0 (100 trials)
peak memory usage: 0 (MB)
residual (|Ax-b|/(|A||x|+|b|)): 2.54e-19 4.93e-19 4.93e-19 5.89e-15
residual 5.9e-05 (|Ax-b|/(|A||x|+|b|)) after iterative refinement
rcond 9.5e-06
./cholmod_demo < Matrix/lp_afiro.tri
---------------------------------- cholmod_demo:
cholmod version 3.0.12
SuiteSparse version 5.2.0
norm (A,inf) = 20.525
norm (A,1) = 3.429
CHOLMOD sparse: A: 27-by-51, nz 102, up/lo. OK
CHOLMOD dense: B: 27-by-1, OK
bnorm 1.96296
Analyze: flop 529 lnz 113
Factorizing A*A'+beta*I
CHOLMOD factor: L: 27-by-27 simplicial, LDL'. nzmax 113. nz 113 OK
Ordering: AMD fl/lnz 4.7 lnz/anz 1.3
ints in L: 280, doubles in L: 113
factor flops 529 nnz(L) 113 (w/no amalgamation)
nnz(A): 90
flops / nnz(L): 4.7
nnz(L) / nnz(A): 1.3
analyze cputime: 0.0000
factor cputime: 0.0000 mflop: 0.0
solve cputime: 0.0000 mflop: 0.0
overall cputime: 0.0000 mflop: 0.0
solve cputime: 0.0000 mflop: 0.0 (100 trials)
solve2 cputime: 0.0000 mflop: 0.0 (100 trials)
peak memory usage: 0 (MB)
residual (|Ax-b|/(|A||x|+|b|)): 7.43e-17 6.36e-17 6.36e-17 2.80e-17
rcond 3.0e-02
./cholmod_l_demo < Matrix/lp_afiro.tri
---------------------------------- cholmod_l_demo:
cholmod version 3.0.12
SuiteSparse version 5.2.0
norm (A,inf) = 20.525
norm (A,1) = 3.429
CHOLMOD sparse: A: 27-by-51, nz 102, up/lo. OK
CHOLMOD dense: B: 27-by-1, OK
bnorm 1.96296
Analyze: flop 529 lnz 113
Factorizing A*A'+beta*I
CHOLMOD factor: L: 27-by-27 simplicial, LDL'. nzmax 113. nz 113 OK
nmethods: 3
Ordering: AMD fl/lnz 4.7 lnz/anz 1.3
ints in L: 280, doubles in L: 113
factor flops 529 nnz(L) 113 (w/no amalgamation)
nnz(A): 90
flops / nnz(L): 4.7
nnz(L) / nnz(A): 1.3
analyze cputime: 0.0000
factor cputime: 0.0000 mflop: 0.0
solve cputime: 0.0000 mflop: 0.0
overall cputime: 0.0000 mflop: 0.0
solve cputime: 0.0000 mflop: 0.0 (100 trials)
solve2 cputime: 0.0000 mflop: 0.0 (100 trials)
peak memory usage: 0 (MB)
residual (|Ax-b|/(|A||x|+|b|)): 7.43e-17 6.36e-17 6.36e-17 2.80e-17
rcond 3.0e-02
./cholmod_demo < Matrix/can___24.mtx
---------------------------------- cholmod_demo:
cholmod version 3.0.12
SuiteSparse version 5.2.0
norm (A,inf) = 17
norm (A,1) = 17
CHOLMOD sparse: A: 24-by-24, nz 92, upper. OK
CHOLMOD dense: B: 24-by-1, OK
bnorm 1.95833
Analyze: flop 656 lnz 120
Factorizing A
CHOLMOD factor: L: 24-by-24 simplicial, LDL'. nzmax 120. nz 120 OK
Ordering: AMD fl/lnz 5.5 lnz/anz 1.3
ints in L: 269, doubles in L: 120
factor flops 656 nnz(L) 120 (w/no amalgamation)
nnz(A*A'): 92
flops / nnz(L): 5.5
nnz(L) / nnz(A): 1.3
analyze cputime: 0.0000
factor cputime: 0.0000 mflop: 0.0
solve cputime: 0.0000 mflop: 0.0
overall cputime: 0.0000 mflop: 0.0
solve cputime: 0.0000 mflop: 0.0 (100 trials)
solve2 cputime: 0.0000 mflop: 0.0 (100 trials)
peak memory usage: 0 (MB)
residual (|Ax-b|/(|A||x|+|b|)): 1.27e-16 1.07e-16 1.07e-16 1.23e-17
residual 1.9e+00 (|Ax-b|/(|A||x|+|b|)) after iterative refinement
rcond 5.0e-01
./cholmod_l_demo < Matrix/can___24.mtx
=>> Killing runaway build after 21600 seconds with no output
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