[package - 120i386-default][science/gromacs] Failed for gromacs-2019.2_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sun Apr 28 03:45:03 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: head/science/gromacs/Makefile 499638 2019-04-22 13:16:33Z gerald $
Log URL: http://beefy5.nyi.freebsd.org/data/120i386-default/500184/logs/gromacs-2019.2_1.log
Build URL: http://beefy5.nyi.freebsd.org/build.html?mastername=120i386-default&build=500184
Log:
=>> Building science/gromacs
build started at Sun Apr 28 03:22:50 UTC 2019
port directory: /usr/ports/science/gromacs
package name: gromacs-2019.2_1
building for: FreeBSD 120i386-default-job-12 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 i386
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/gromacs/Makefile 499638 2019-04-22 13:16:33Z gerald $
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===> The following configuration options are available for gromacs-2019.2_1:
ATLAS=off: Use ATLAS for BLAS and LAPACK
FLOAT=on: Use single instead of double precision
OPENCL=off: Heterogeneous computing via OpenCL
OPENMP=on: Parallel processing support via OpenMP
SIMD=off: Use CPU-specific optimizations
X11=on: X11 (graphics) support
====> Multiprocessing: you have to select exactly one of them
NOMP=off: No multiprocessing support
MPICH=off: Parallel processing support via MPICH
OPENMPI=off: Parallel processing support via Open MPI
THREAD_MPI=on: Build a thread-MPI-based multithreaded version of GROMACS
===> Use 'make config' to modify these settings
---End OPTIONS List---
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yuri at FreeBSD.org
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=======================<phase: check-sanity >============================
===> License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> gromacs-2019.2_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[120i386-default-job-12] Installing pkg-1.10.5_5...
[120i386-default-job-12] Extracting pkg-1.10.5_5: .......... done
===> gromacs-2019.2_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of gromacs-2019.2_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-2019.2_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-2019.2_1 for building
=> SHA256 Checksum OK for gromacs-2019.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-2019.2_1 for building
===> Extracting for gromacs-2019.2_1
=> SHA256 Checksum OK for gromacs-2019.2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
<snip>
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:106:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-field", "field", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:107:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-table", "table", ffOPTRD },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:108:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-tablep", "tablep", ffOPTRD },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:109:58: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-tableb", "table", ffOPTRDMULT },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:110:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efTRX, "-rerun", "rerun", ffOPTRD },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:111:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-tpi", "tpi", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:112:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-tpid", "tpidist", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:113:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efEDI, "-ei", "sam", ffOPTRD },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:114:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-eo", "edsam", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:115:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-devout", "deviatie", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:116:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-runav", "runaver", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:117:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-px", "pullx", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:118:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-pf", "pullf", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:119:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-ro", "rotation", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:120:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efLOG, "-ra", "rotangles", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:121:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efLOG, "-rs", "rotslabs", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:122:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efLOG, "-rt", "rottorque", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:123:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efMTX, "-mtx", "nm", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:124:57: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efRND, "-multidir", nullptr, ffOPTRDMULT},
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:125:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-awh", "awhinit", ffOPTRD },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:126:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efDAT, "-membed", "membed", ffOPTRD },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:127:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efTOP, "-mp", "membed", ffOPTRD },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:128:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efNDX, "-mn", "membed", ffOPTRD },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:129:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-if", "imdforces", ffOPTWR },
^
/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/legacymdrunoptions.h:130:54: warning: missing field 'filenames' initializer [-Wmissing-field-initializers]
{ efXVG, "-swap", "swapions", ffOPTWR }}};
^
34 warnings generated.
[ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/simulationcontext.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrun/tpi.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrunutility/handlerestart.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrunutility/mdmodules.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mdrunutility/threadaffinity.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/abstractoption.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/abstractsection.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/basicoptions.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/behaviorcollection.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/filenameoption.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/filenameoptionmanager.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/options.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/optionsassigner.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/optionsection.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/optionsvisitor.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/timeunitmanager.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/options/treesupport.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/restraint/manager.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/restraint/restraintmdmodule.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/taskassignment/decidegpuusage.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/taskassignment/findallgputasks.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/taskassignment/reportgpuusage.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/taskassignment/resourcedivision.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/taskassignment/taskassignment.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/taskassignment/usergpuids.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/trajectory/energyframe.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/trajectory/trajectoryframe.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mimic/MimicCommunicator.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/gromacs/mimic/MimicUtils.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.2/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -L/usr/local/lib -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enu
m -Wno-disabled-macro-expansion -Wno-cast-align -Wno-reserved-id-macro -Wno-global-constructors -Wno-exit-time-destructors -Wno-unused-macros -Wno-weak-vtables -Wno-conditional-uninitialized -Wno-format-nonliteral -Wno-shadow -Wno-cast-qual -Wno-documentation -Wno-used-but-marked-unused -Wno-padded -Wno-float-equal -Wno-old-style-cast -Wno-conversion -Wno-double-promotion -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/utility/baseversion-gen.cpp
c++: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument]
[ 97%] Linking CXX shared library ../../lib/libgromacs.so
cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -shared -Wl,-soname,libgromacs.so.4 -o ../../lib/libgromacs.so.4.0.0 CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o CMakeFil
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/usr/local/bin/ld: ../../lib/libgromacs.so.4.0.0: undefined reference to `__atomic_load'
c++: error: linker command failed with exit code 1 (use -v to see invocation)
*** Error code 1
Stop.
make[3]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build
*** Error code 1
Stop.
make: stopped in /usr/ports/science/gromacs
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