[package - 120armv7-quarterly][science/py-scipy] Failed for py36-scipy-1.2.0 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Apr 16 08:44:32 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: python at FreeBSD.org
Last committer: wen at FreeBSD.org
Ident: $FreeBSD: branches/2019Q2/science/py-scipy/Makefile 488862 2019-01-01 08:56:25Z wen $
Log URL: http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/499069/logs/py36-scipy-1.2.0.log
Build URL: http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=499069
Log:
=>> Building science/py-scipy
build started at Tue Apr 16 08:43:55 UTC 2019
port directory: /usr/ports/science/py-scipy
package name: py36-scipy-1.2.0
building for: FreeBSD 120armv7-quarterly-job-04 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 arm
maintained by: python at FreeBSD.org
Makefile ident: $FreeBSD: branches/2019Q2/science/py-scipy/Makefile 488862 2019-01-01 08:56:25Z wen $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300009
Jail OSVERSION: 1200086
Job Id: 04
---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv7
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200086
UNAME_v=FreeBSD 12.0-RELEASE-p3 1200086
UNAME_r=12.0-RELEASE-p3
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
QEMU_EMULATING=1
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-3-g02cc9753
MASTERMNT=/usr/local/poudriere/data/.m/120armv7-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=120armv7-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py36
DEPENDS_ARGS=
MAKE_ARGS= FLAVOR=py36
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for py36-scipy-1.2.0:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
python at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py36 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py36 HOME=/wrkdirs/usr/ports/science/py-scipy/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py36 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py36 HOME=/wrkdirs/usr/ports/science/py-scipy/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/
usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=freebsd12 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py36-scipy" EXAMPLESDIR="share/examples/py36-scipy" DATADIR="share/py36-scipy" WWWDIR="www/py36-scipy" ETCDIR="etc/py36-scipy"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py36-scipy DOCSDIR=/usr/local/share/doc/py36-scipy EXAMPLESDIR=/usr/local/share/examples/py36-scipy WWWDIR=/usr/local/www/py36-scipy ETCDIR=/usr/local/etc/py36-scipy
--End SUB_LIST--
---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv7
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT= true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=yes
CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
CC_OUTPUT_9d218390_bfa62e83=yes
CC_OUTPUT_9d218390_f0b4d593=yes
CC_OUTPUT_9d218390_308abb44=yes
CC_OUTPUT_9d218390_f00456e5=yes
CC_OUTPUT_9d218390_65ad290d=yes
CC_OUTPUT_9d218390_f2776b26=yes
CC_OUTPUT_9d218390_b2657cc3=yes
CC_OUTPUT_9d218390_380987f7=yes
CC_OUTPUT_9d218390_160933ec=yes
CC_OUTPUT_9d218390_fb62803b=yes
_OBJC_CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
_OBJC_ALTCCVERSION_9d218390=none
ARCH=armv7
OPSYS=FreeBSD
_OSRELEASE=12.0-RELEASE-p3
OSREL=12.0
OSVERSION=1200086
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py36-scipy-1.2.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[120armv7-quarterly-job-04] Installing pkg-1.10.5_5...
[120armv7-quarterly-job-04] Extracting pkg-1.10.5_5: .......... done
===> py36-scipy-1.2.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py36-scipy-1.2.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
=> scipy-1.2.0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://files.pythonhosted.org/packages/source/s/scipy/scipy-1.2.0.tar.gz
scipy-1.2.0.tar.gz 22 MB 16 MBps 02s
=> scipy-ref-1.2.0.pdf doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://docs.scipy.org/doc/scipy/scipy-ref-1.2.0.pdf
fetch: https://docs.scipy.org/doc/scipy/scipy-ref-1.2.0.pdf: Not Found
=> Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/scipy-ref-1.2.0.pdf
scipy-ref-1.2.0.pdf 34 MB 98 MBps 00s
===> Fetching all distfiles required by py36-scipy-1.2.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-scipy-1.2.0 for building
=> SHA256 Checksum OK for scipy-1.2.0.tar.gz.
=> SHA256 Checksum OK for scipy-ref-1.2.0.pdf.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-scipy-1.2.0 for building
===> Extracting for py36-scipy-1.2.0
=> SHA256 Checksum OK for scipy-1.2.0.tar.gz.
=> SHA256 Checksum OK for scipy-ref-1.2.0.pdf.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py36-scipy-1.2.0
===========================================================================
=======================<phase: build-depends >============================
===> py36-scipy-1.2.0 depends on package: py36-numpy>0 - not found
===> Installing existing package /packages/All/py36-numpy-1.16.1,1.txz
[120armv7-quarterly-job-04] Installing py36-numpy-1.16.1,1...
[120armv7-quarterly-job-04] `-- Installing blas-3.5.0_5...
[120armv7-quarterly-job-04] | `-- Installing gcc8-8.3.0_1...
[120armv7-quarterly-job-04] | | `-- Installing binutils-2.32,1...
[120armv7-quarterly-job-04] | | `-- Installing gettext-runtime-0.19.8.1_2...
[120armv7-quarterly-job-04] | | | `-- Installing indexinfo-0.3.1...
[120armv7-quarterly-job-04] | | | `-- Extracting indexinfo-0.3.1: .... done
[120armv7-quarterly-job-04] | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
[120armv7-quarterly-job-04] | | `-- Extracting binutils-2.32,1: .......... done
[120armv7-quarterly-job-04] | | `-- Installing gmp-6.1.2_1...
[120armv7-quarterly-job-04] | | `-- Extracting gmp-6.1.2_1: .......... done
[120armv7-quarterly-job-04] | | `-- Installing mpc-1.1.0_2...
[120armv7-quarterly-job-04] | | `-- Installing mpfr-4.0.2...
[120armv7-quarterly-job-04] | | `-- Extracting mpfr-4.0.2: .......... done
[120armv7-quarterly-job-04] | | `-- Extracting mpc-1.1.0_2: ......... done
[120armv7-quarterly-job-04] | `-- Extracting gcc8-8.3.0_1: .......... done
[120armv7-quarterly-job-04] `-- Extracting blas-3.5.0_5: ....... done
[120armv7-quarterly-job-04] `-- Installing cblas-1.0_10...
[120armv7-quarterly-job-04] `-- Extracting cblas-1.0_10: ......... done
[120armv7-quarterly-job-04] `-- Installing lapack-3.5.0_6...
[120armv7-quarterly-job-04] `-- Extracting lapack-3.5.0_6: .......... done
[120armv7-quarterly-job-04] `-- Installing py36-setuptools-40.8.0...
[120armv7-quarterly-job-04] | `-- Installing python36-3.6.8_1...
[120armv7-quarterly-job-04] | | `-- Installing libffi-3.2.1_3...
[120armv7-quarterly-job-04] | | `-- Extracting libffi-3.2.1_3: .......... done
[120armv7-quarterly-job-04] | | `-- Installing readline-7.0.5...
[120armv7-quarterly-job-04] | | `-- Extracting readline-7.0.5: .......... done
[120armv7-quarterly-job-04] | `-- Extracting python36-3.6.8_1: .......... done
[120armv7-quarterly-job-04] `-- Extracting py36-setuptools-40.8.0: .......... done
[120armv7-quarterly-job-04] `-- Installing suitesparse-5.2.0_2...
[120armv7-quarterly-job-04] | `-- Installing metis-5.1.0_7...
[120armv7-quarterly-job-04] | `-- Extracting metis-5.1.0_7: .......... done
[120armv7-quarterly-job-04] | `-- Installing openblas-0.2.20_7,1...
[120armv7-quarterly-job-04] | `-- Extracting openblas-0.2.20_7,1: ......... done
[120armv7-quarterly-job-04] `-- Extracting suitesparse-5.2.0_2: .......... done
[120armv7-quarterly-job-04] Extracting py36-numpy-1.16.1,1: .......... done
Message from gcc8-8.3.0_1:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc8
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_10:
===> NOTICE:
The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python36-3.6.8_1:
===========================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py36-gdbm databases/py-gdbm at py36
py36-sqlite3 databases/py-sqlite3 at py36
py36-tkinter x11-toolkits/py-tkinter at py36
===========================================================================
Message from py36-setuptools-40.8.0:
*******************************************************************
Only /usr/local/bin/easy_install-3.6 script has been installed
since Python 3.6 is not the default Python version.
*******************************************************************
Message from metis-5.1.0_7:
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> py36-scipy-1.2.0 depends on package: py36-numpy>0 - found
===> Returning to build of py36-scipy-1.2.0
===> py36-scipy-1.2.0 depends on executable: gfortran8 - found
===> py36-scipy-1.2.0 depends on package: py36-setuptools>0 - found
===> py36-scipy-1.2.0 depends on file: /usr/local/bin/python3.6 - found
===> py36-scipy-1.2.0 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py36-scipy-1.2.0
setup.py:377: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates
warnings.warn("Unrecognized setuptools command, proceeding with "
Traceback (most recent call last):
File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
from . import multiarray
File "/usr/local/lib/python3.6/site-packages/numpy/core/multiarray.py", line 12, in <module>
from . import overrides
File "/usr/local/lib/python3.6/site-packages/numpy/core/overrides.py", line 6, in <module>
from numpy.core._multiarray_umath import (
ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv at GCC_3.5"
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 492, in <module>
setup_package()
File "setup.py", line 468, in setup_package
from numpy.distutils.core import setup
File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
from . import core
File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 47, in <module>
raise ImportError(msg)
ImportError:
IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
Importing the multiarray numpy extension module failed. Most
likely you are trying to import a failed build of numpy.
Here is how to proceed:
- If you're working with a numpy git repository, try `git clean -xdf`
(removes all files not under version control) and rebuild numpy.
- If you are simply trying to use the numpy version that you have installed:
your installation is broken - please reinstall numpy.
- If you have already reinstalled and that did not fix the problem, then:
1. Check that you are using the Python you expect (you're using /usr/local/bin/python3.6),
and that you have no directories in your PATH or PYTHONPATH that can
interfere with the Python and numpy versions you're trying to use.
2. If (1) looks fine, you can open a new issue at
https://github.com/numpy/numpy/issues. Please include details on:
- how you installed Python
- how you installed numpy
- your operating system
- whether or not you have multiple versions of Python installed
- if you built from source, your compiler versions and ideally a build log
Note: this error has many possible causes, so please don't comment on
an existing issue about this - open a new one instead.
Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv at GCC_3.5"
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-scipy
More information about the freebsd-pkg-fallout
mailing list