[exp - 112amd64-default-build-as-user][science/pcmsolver] Failed for pcmsolver-1.2.1_3 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Fri Dec 21 09:29:53 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: head/science/pcmsolver/Makefile 487784 2018-12-19 06:09:26Z yuri $
Log URL: http://package19.nyi.freebsd.org/data/112amd64-default-build-as-user/487818/logs/pcmsolver-1.2.1_3.log
Build URL: http://package19.nyi.freebsd.org/build.html?mastername=112amd64-default-build-as-user&build=487818
Log:
=>> Building science/pcmsolver
build started at Fri Dec 21 09:26:05 UTC 2018
port directory: /usr/ports/science/pcmsolver
package name: pcmsolver-1.2.1_3
building for: FreeBSD 112amd64-default-build-as-user-job-18 11.2-RELEASE-p7 FreeBSD 11.2-RELEASE-p7 amd64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/pcmsolver/Makefile 487784 2018-12-19 06:09:26Z yuri $
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> pcmsolver-1.2.1_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[112amd64-default-build-as-user-job-18] Installing pkg-1.10.5_5...
[112amd64-default-build-as-user-job-18] Extracting pkg-1.10.5_5: .......... done
===> pcmsolver-1.2.1_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of pcmsolver-1.2.1_3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by pcmsolver-1.2.1_3 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by pcmsolver-1.2.1_3 for building
=> SHA256 Checksum OK for PCMSolver-pcmsolver-v1.2.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by pcmsolver-1.2.1_3 for building
===> Extracting for pcmsolver-1.2.1_3
=> SHA256 Checksum OK for PCMSolver-pcmsolver-v1.2.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for pcmsolver-1.2.1_3
===> Applying FreeBSD patches for pcmsolver-1.2.1_3
===========================================================================
=======================<phase: build-depends >============================
===> pcmsolver-1.2.1_3 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.13.1_1.txz
[112amd64-default-build-as-user-job-18] Installing cmake-3.13.1_1...
[112amd64-default-build-as-user-job-18] `-- Installing curl-7.62.0...
[112amd64-default-build-as-user-job-18] | `-- Installing ca_root_nss-3.41...
[112amd64-default-build-as-user-job-18] | `-- Extracting ca_root_nss-3.41: ........ done
[112amd64-default-build-as-user-job-18] | `-- Installing libnghttp2-1.35.1...
[112amd64-default-build-as-user-job-18] | `-- Extracting libnghttp2-1.35.1: .......... done
[112amd64-default-build-as-user-job-18] `-- Extracting curl-7.62.0: .......... done
[112amd64-default-build-as-user-job-18] `-- Installing expat-2.2.6_1...
[112amd64-default-build-as-user-job-18] `-- Extracting expat-2.2.6_1: .......... done
[112amd64-default-build-as-user-job-18] `-- Installing jsoncpp-1.8.1_5...
[112amd64-default-build-as-user-job-18] `-- Extracting jsoncpp-1.8.1_5: .......... done
[112amd64-default-build-as-user-job-18] `-- Installing libarchive-3.3.3,1...
[112amd64-default-build-as-user-job-18] | `-- Installing liblz4-1.8.3,1...
[112amd64-default-build-as-user-job-18] | `-- Extracting liblz4-1.8.3,1: .......... done
[112amd64-default-build-as-user-job-18] | `-- Installing lzo2-2.10_1...
<snip>
[112amd64-default-build-as-user-job-18] `-- Extracting gmp-6.1.2_1: .......... done
[112amd64-default-build-as-user-job-18] `-- Installing mpc-1.1.0_2...
[112amd64-default-build-as-user-job-18] | `-- Installing mpfr-4.0.1_2...
[112amd64-default-build-as-user-job-18] | `-- Extracting mpfr-4.0.1_2: .......... done
[112amd64-default-build-as-user-job-18] `-- Extracting mpc-1.1.0_2: ......... done
[112amd64-default-build-as-user-job-18] Extracting gcc8-8.2.0_4: .......... done
Message from gcc8-8.2.0_4:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc8
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> pcmsolver-1.2.1_3 depends on executable: gfortran8 - found
===> Returning to build of pcmsolver-1.2.1_3
===> pcmsolver-1.2.1_3 depends on file: /usr/local/bin/python2.7 - not found
===> Installing existing package /packages/All/python27-2.7.15.txz
[112amd64-default-build-as-user-job-18] Installing python27-2.7.15...
[112amd64-default-build-as-user-job-18] `-- Installing libffi-3.2.1_3...
[112amd64-default-build-as-user-job-18] `-- Extracting libffi-3.2.1_3: .......... done
[112amd64-default-build-as-user-job-18] `-- Installing readline-7.0.5...
[112amd64-default-build-as-user-job-18] `-- Extracting readline-7.0.5: .......... done
[112amd64-default-build-as-user-job-18] Extracting python27-2.7.15: .......... done
Message from python27-2.7.15:
===========================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
tkinter x11-toolkits/py-tkinter
===========================================================================
===> pcmsolver-1.2.1_3 depends on file: /usr/local/bin/python2.7 - found
===> Returning to build of pcmsolver-1.2.1_3
===> pcmsolver-1.2.1_3 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for pcmsolver-1.2.1_3
-- The CXX compiler identification is Clang 6.0.0
-- The C compiler identification is Clang 6.0.0
-- The Fortran compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working Fortran compiler: /usr/local/bin/gfortran8
-- Check for working Fortran compiler: /usr/local/bin/gfortran8 -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/local/bin/gfortran8 supports Fortran 90
-- Checking whether /usr/local/bin/gfortran8 supports Fortran 90 -- yes
-- FCFLAGS is set to '-Wl,-rpath=/usr/local/lib/gcc8'.
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- Setting (unspecified) option ENABLE_CXX11_SUPPORT: ON
-- Using C++11 standard
-- Setting (unspecified) option ENABLE_GPERFTOOLS: OFF
-- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.15")
-- Setting (unspecified) option PYMOD_INSTALL_LIBDIR: python
-- Could NOT find Boost
-- No libraries required, installing headers
-- Eigen 3.3.2 is located here: /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/external/eigen3/include/eigen3
-- Found ZLIB: /usr/lib/libz.so (found version "1.2.11")
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done
-- Generating done
-- Build files have been written to: /wrkdirs/usr/ports/science/pcmsolver/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for pcmsolver-1.2.1_3
Scanning dependencies of target update_version
[ 2%] Generating version info
Blindly (no git) accepting release version: 1.2.1+zzzzzzz (recorded)
1.2.1 {} zzzzzzz 1.2.1.0 release 1.2.1 <-- 1.2.1+zzzzzzz
[ 2%] Built target update_version
Scanning dependencies of target generate-config-hpp
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[ 4%] Unpacking Boost
[ 6%] Generating user-config.jam
[ 8%] Installing Boost headers
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[ 10%] Built target custom_boost
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[ 12%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/metal/metal_sphere.F90.o
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[ 84%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/cnpy.cpp.o
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[1m/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/src/utils/getkw/Section.cpp:110:5: [0m[0;1;35mwarning: [0m[1m'~Section' has a non-throwing exception specification but can still throw [-Wexceptions][0m
THROW_GETKW("Error! Unknown key type!");
[0;1;32m ^
[0m[1m/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/src/utils/getkw/GetkwError.h:27:5: [0m[0;1;30mnote: [0mexpanded from macro 'THROW_GETKW'[0m
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Scanning dependencies of target pcm-shared
[ 94%] Linking CXX shared library ../lib/libpcm.so
[ 94%] Built target pcm-shared
Scanning dependencies of target pcm-static
[ 96%] Linking CXX static library ../lib/libpcm.a
[ 96%] Built target pcm-static
Scanning dependencies of target run_pcm
[ 98%] Building CXX object src/bin/CMakeFiles/run_pcm.dir/run_pcm.cpp.o
[100%] Linking CXX executable ../../bin/run_pcm
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__getf2 at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__floatunditf at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__subtf3 at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__multf3 at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__unordtf2 at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__lttf2 at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__addtf3 at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__gttf2 at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__divtf3 at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__letf2 at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__cpu_model at GCC_4.8.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__netf2 at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__floatditf at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__eqtf2 at GCC_4.6.0'
//usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__floatsitf at GCC_4.6.0'
c++: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m
*** Error code 1
Stop.
make[3]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
*** Error code 1
Stop.
make: stopped in /usr/ports/science/pcmsolver
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