[package - 112armv6-quarterly][science/py-h5py] Failed for py36-h5py-2.8.0_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Nov 6 01:12:33 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet at FreeBSD.org
Last committer: sunpoet at FreeBSD.org
Ident: $FreeBSD: branches/2018Q4/science/py-h5py/Makefile 479046 2018-09-05 22:05:23Z sunpoet $
Log URL: http://beefy15.nyi.freebsd.org/data/112armv6-quarterly/484269/logs/py36-h5py-2.8.0_1.log
Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=112armv6-quarterly&build=484269
Log:
=>> Building science/py-h5py
build started at Tue Nov 6 01:11:33 UTC 2018
port directory: /usr/ports/science/py-h5py
package name: py36-h5py-2.8.0_1
building for: FreeBSD 112armv6-quarterly-job-09 11.2-RELEASE-p4 FreeBSD 11.2-RELEASE-p4 1102000 arm
maintained by: sunpoet at FreeBSD.org
Makefile ident: $FreeBSD: branches/2018Q4/science/py-h5py/Makefile 479046 2018-09-05 22:05:23Z sunpoet $
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py36-h5py-2.8.0_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[112armv6-quarterly-job-09] Installing pkg-1.10.5_5...
[112armv6-quarterly-job-09] Extracting pkg-1.10.5_5: .......... done
===> py36-h5py-2.8.0_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py36-h5py-2.8.0_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-h5py-2.8.0_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-h5py-2.8.0_1 for building
=> SHA256 Checksum OK for h5py-2.8.0.tar.gz.
<snip>
[112armv6-quarterly-job-09] Extracting py36-numpy-1.15.0,1: .......... done
Message from gcc7-7.3.0_5:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc7
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_9:
===> NOTICE:
The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python36-3.6.6_1:
===========================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py36-gdbm databases/py-gdbm at py36
py36-sqlite3 databases/py-sqlite3 at py36
py36-tkinter x11-toolkits/py-tkinter at py36
===========================================================================
Message from py36-setuptools-40.0.0:
*******************************************************************
Only /usr/local/bin/easy_install-3.6 script has been installed
since Python 3.6 is not the default Python version.
*******************************************************************
Message from metis-5.1.0_5:
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> py36-h5py-2.8.0_1 depends on package: py36-numpy>0 - found
===> Returning to build of py36-h5py-2.8.0_1
===> py36-h5py-2.8.0_1 depends on package: py36-pkgconfig>=0 - not found
===> Installing existing package /packages/All/py36-pkgconfig-1.4.0.txz
[112armv6-quarterly-job-09] Installing py36-pkgconfig-1.4.0...
[112armv6-quarterly-job-09] Extracting py36-pkgconfig-1.4.0: .......... done
===> py36-h5py-2.8.0_1 depends on package: py36-pkgconfig>=0 - found
===> Returning to build of py36-h5py-2.8.0_1
===> py36-h5py-2.8.0_1 depends on package: py36-six>=0 - not found
===> Installing existing package /packages/All/py36-six-1.11.0.txz
[112armv6-quarterly-job-09] Installing py36-six-1.11.0...
[112armv6-quarterly-job-09] Extracting py36-six-1.11.0: .......... done
===> py36-h5py-2.8.0_1 depends on package: py36-six>=0 - found
===> Returning to build of py36-h5py-2.8.0_1
===> py36-h5py-2.8.0_1 depends on executable: cython-3.6 - not found
===> Installing existing package /packages/All/py36-cython-0.28.2.txz
[112armv6-quarterly-job-09] Installing py36-cython-0.28.2...
[112armv6-quarterly-job-09] Extracting py36-cython-0.28.2: .......... done
===> py36-h5py-2.8.0_1 depends on executable: cython-3.6 - found
===> Returning to build of py36-h5py-2.8.0_1
===> py36-h5py-2.8.0_1 depends on package: py36-setuptools>0 - found
===> py36-h5py-2.8.0_1 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=======================<phase: lib-depends >============================
===> py36-h5py-2.8.0_1 depends on shared library: libhdf5.so - not found
===> Installing existing package /packages/All/hdf5-1.10.2.txz
[112armv6-quarterly-job-09] Installing hdf5-1.10.2...
[112armv6-quarterly-job-09] `-- Installing hdf-szip-2.1_2...
[112armv6-quarterly-job-09] `-- Extracting hdf-szip-2.1_2: .......... done
[112armv6-quarterly-job-09] Extracting hdf5-1.10.2: .......... done
===> py36-h5py-2.8.0_1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===> Returning to build of py36-h5py-2.8.0_1
===========================================================================
=======================<phase: configure >============================
===> Configuring for py36-h5py-2.8.0_1
running config
===========================================================================
=======================<phase: build >============================
===> Building for py36-h5py-2.8.0_1
running build
running build_py
creating build
creating build/lib.freebsd-11.2-RELEASE-p4-arm-3.6
creating build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py
copying h5py/ipy_completer.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py
copying h5py/__init__.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py
copying h5py/version.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py
copying h5py/highlevel.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py
copying h5py/h5py_warnings.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py
creating build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/group.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/files.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/compat.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/__init__.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/dataset.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/base.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/datatype.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/selections.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/filters.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/selections2.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/dims.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
copying h5py/_hl/attrs.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/_hl
creating build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests
copying h5py/tests/common.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests
copying h5py/tests/__init__.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests
creating build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_file.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5f.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/__init__.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_base.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_attrs.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_group.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_file_image.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_objects.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5t.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5d_direct_chunk_write.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_dataset.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_datatype.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_attrs_data.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_dimension_scales.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5p.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_slicing.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_selections.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/old
creating build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_threads.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_file.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/__init__.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_dims_dimensionproxy.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_filters.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_dataset_getitem.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_dataset_swmr.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_attribute_create.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_datatype.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/h5py/tests/hl
running build_ext
Traceback (most recent call last):
File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
from . import multiarray
ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv at GCC_3.5"
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 168, in <module>
cmdclass = CMDCLASS,
File "/usr/local/lib/python3.6/site-packages/setuptools/__init__.py", line 131, in setup
return distutils.core.setup(**attrs)
File "/usr/local/lib/python3.6/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/local/lib/python3.6/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/usr/local/lib/python3.6/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/usr/local/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/wrkdirs/usr/ports/science/py-h5py/work-py36/h5py-2.8.0/setup_build.py", line 157, in run
import numpy
File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
from . import add_newdocs
File "/usr/local/lib/python3.6/site-packages/numpy/add_newdocs.py", line 13, in <module>
from numpy.lib import add_newdoc
File "/usr/local/lib/python3.6/site-packages/numpy/lib/__init__.py", line 8, in <module>
from .type_check import *
File "/usr/local/lib/python3.6/site-packages/numpy/lib/type_check.py", line 11, in <module>
import numpy.core.numeric as _nx
File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 26, in <module>
raise ImportError(msg)
ImportError:
Importing the multiarray numpy extension module failed. Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control). Otherwise reinstall numpy.
Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv at GCC_3.5"
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-h5py
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