[package - 112armv6-quarterly][science/py-spglib] Failed for py36-spglib-1.10.4.11 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Nov 6 01:13:38 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: branches/2018Q4/science/py-spglib/Makefile 480104 2018-09-19 18:35:55Z yuri $
Log URL: http://beefy15.nyi.freebsd.org/data/112armv6-quarterly/484269/logs/py36-spglib-1.10.4.11.log
Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=112armv6-quarterly&build=484269
Log:
=>> Building science/py-spglib
build started at Tue Nov 6 01:12:44 UTC 2018
port directory: /usr/ports/science/py-spglib
package name: py36-spglib-1.10.4.11
building for: FreeBSD 112armv6-quarterly-job-07 11.2-RELEASE-p4 FreeBSD 11.2-RELEASE-p4 1102000 arm
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: branches/2018Q4/science/py-spglib/Makefile 480104 2018-09-19 18:35:55Z yuri $
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py36-spglib-1.10.4.11 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[112armv6-quarterly-job-07] Installing pkg-1.10.5_5...
[112armv6-quarterly-job-07] Extracting pkg-1.10.5_5: .......... done
===> py36-spglib-1.10.4.11 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py36-spglib-1.10.4.11
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-spglib-1.10.4.11 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-spglib-1.10.4.11 for building
=> SHA256 Checksum OK for spglib-1.10.4.11.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-spglib-1.10.4.11 for building
===> Extracting for py36-spglib-1.10.4.11
=> SHA256 Checksum OK for spglib-1.10.4.11.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py36-spglib-1.10.4.11
===========================================================================
=======================<phase: build-depends >============================
===> py36-spglib-1.10.4.11 depends on package: py36-numpy>0 - not found
===> Installing existing package /packages/All/py36-numpy-1.15.0,1.txz
[112armv6-quarterly-job-07] Installing py36-numpy-1.15.0,1...
[112armv6-quarterly-job-07] `-- Installing blas-3.5.0_4...
[112armv6-quarterly-job-07] | `-- Installing gcc7-7.3.0_5...
[112armv6-quarterly-job-07] | | `-- Installing binutils-2.30_5,1...
[112armv6-quarterly-job-07] | | `-- Installing gettext-runtime-0.19.8.1_1...
[112armv6-quarterly-job-07] | | | `-- Installing indexinfo-0.3.1...
[112armv6-quarterly-job-07] | | | `-- Extracting indexinfo-0.3.1: .... done
[112armv6-quarterly-job-07] | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[112armv6-quarterly-job-07] | | `-- Extracting binutils-2.30_5,1: .......... done
[112armv6-quarterly-job-07] | | `-- Installing gmp-6.1.2...
[112armv6-quarterly-job-07] | | `-- Extracting gmp-6.1.2: .......... done
[112armv6-quarterly-job-07] | | `-- Installing mpc-1.1.0_1...
[112armv6-quarterly-job-07] | | `-- Installing mpfr-4.0.1...
[112armv6-quarterly-job-07] | | `-- Extracting mpfr-4.0.1: .......... done
[112armv6-quarterly-job-07] | | `-- Extracting mpc-1.1.0_1: ......... done
[112armv6-quarterly-job-07] | `-- Extracting gcc7-7.3.0_5: .......... done
[112armv6-quarterly-job-07] `-- Extracting blas-3.5.0_4: ....... done
[112armv6-quarterly-job-07] `-- Installing cblas-1.0_9...
[112armv6-quarterly-job-07] `-- Extracting cblas-1.0_9: ......... done
[112armv6-quarterly-job-07] `-- Installing lapack-3.5.0_5...
[112armv6-quarterly-job-07] `-- Extracting lapack-3.5.0_5: .......... done
[112armv6-quarterly-job-07] `-- Installing py36-setuptools-40.0.0...
[112armv6-quarterly-job-07] | `-- Installing python36-3.6.6_1...
[112armv6-quarterly-job-07] | | `-- Installing libffi-3.2.1_2...
[112armv6-quarterly-job-07] | | `-- Extracting libffi-3.2.1_2: .......... done
[112armv6-quarterly-job-07] | | `-- Installing readline-7.0.3_1...
[112armv6-quarterly-job-07] | | `-- Extracting readline-7.0.3_1: .......... done
[112armv6-quarterly-job-07] | `-- Extracting python36-3.6.6_1: .......... done
[112armv6-quarterly-job-07] `-- Extracting py36-setuptools-40.0.0: .......... done
[112armv6-quarterly-job-07] `-- Installing suitesparse-5.2.0_1...
[112armv6-quarterly-job-07] | `-- Installing metis-5.1.0_5...
[112armv6-quarterly-job-07] | `-- Extracting metis-5.1.0_5: .......... done
[112armv6-quarterly-job-07] | `-- Installing openblas-0.2.20_3,1...
[112armv6-quarterly-job-07] | `-- Extracting openblas-0.2.20_3,1: ......... done
[112armv6-quarterly-job-07] `-- Extracting suitesparse-5.2.0_1: .......... done
[112armv6-quarterly-job-07] Extracting py36-numpy-1.15.0,1: .......... done
Message from gcc7-7.3.0_5:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc7
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_9:
===> NOTICE:
The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python36-3.6.6_1:
===========================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py36-gdbm databases/py-gdbm at py36
py36-sqlite3 databases/py-sqlite3 at py36
py36-tkinter x11-toolkits/py-tkinter at py36
===========================================================================
Message from py36-setuptools-40.0.0:
*******************************************************************
Only /usr/local/bin/easy_install-3.6 script has been installed
since Python 3.6 is not the default Python version.
*******************************************************************
Message from metis-5.1.0_5:
===> NOTICE:
The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> py36-spglib-1.10.4.11 depends on package: py36-numpy>0 - found
===> Returning to build of py36-spglib-1.10.4.11
===> py36-spglib-1.10.4.11 depends on package: py36-setuptools>0 - found
===> py36-spglib-1.10.4.11 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py36-spglib-1.10.4.11
setuptools is used.
running config
===========================================================================
=======================<phase: build >============================
===> Building for py36-spglib-1.10.4.11
setuptools is used.
running build
running build_py
creating build
creating build/lib.freebsd-11.2-RELEASE-p4-arm-3.6
creating build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/spglib
copying spglib/__init__.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/spglib
copying spglib/spglib.py -> build/lib.freebsd-11.2-RELEASE-p4-arm-3.6/spglib
running build_ext
Traceback (most recent call last):
File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
from . import multiarray
ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv at GCC_3.5"
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 145, in <module>
tests_require=['nose'])
File "/usr/local/lib/python3.6/site-packages/setuptools/__init__.py", line 131, in setup
return distutils.core.setup(**attrs)
File "/usr/local/lib/python3.6/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/local/lib/python3.6/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/usr/local/lib/python3.6/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/usr/local/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/local/lib/python3.6/distutils/dist.py", line 973, in run_command
cmd_obj.ensure_finalized()
File "/usr/local/lib/python3.6/distutils/cmd.py", line 107, in ensure_finalized
self.finalize_options()
File "setup.py", line 18, in finalize_options
import numpy
File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
from . import add_newdocs
File "/usr/local/lib/python3.6/site-packages/numpy/add_newdocs.py", line 13, in <module>
from numpy.lib import add_newdoc
File "/usr/local/lib/python3.6/site-packages/numpy/lib/__init__.py", line 8, in <module>
from .type_check import *
File "/usr/local/lib/python3.6/site-packages/numpy/lib/type_check.py", line 11, in <module>
import numpy.core.numeric as _nx
File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 26, in <module>
raise ImportError(msg)
ImportError:
Importing the multiarray numpy extension module failed. Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control). Otherwise reinstall numpy.
Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv at GCC_3.5"
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-spglib
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