[package - 120amd64-default][science/pcmsolver] Failed for pcmsolver-1.2.1_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Nov 1 10:21:24 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: head/science/pcmsolver/Makefile 475857 2018-07-29 22:18:44Z gerald $
Log URL: http://beefy6.nyi.freebsd.org/data/120amd64-default/483439/logs/pcmsolver-1.2.1_1.log
Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=120amd64-default&build=483439
Log:
=>> Building science/pcmsolver
build started at Thu Nov 1 10:19:53 UTC 2018
port directory: /usr/ports/science/pcmsolver
package name: pcmsolver-1.2.1_1
building for: FreeBSD 120amd64-default-job-15 12.0-BETA2 FreeBSD 12.0-BETA2 1200086 amd64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/pcmsolver/Makefile 475857 2018-07-29 22:18:44Z gerald $
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> pcmsolver-1.2.1_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[120amd64-default-job-15] Installing pkg-1.10.5_5...
[120amd64-default-job-15] Extracting pkg-1.10.5_5: .......... done
===> pcmsolver-1.2.1_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of pcmsolver-1.2.1_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by pcmsolver-1.2.1_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by pcmsolver-1.2.1_1 for building
=> SHA256 Checksum OK for PCMSolver-pcmsolver-v1.2.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by pcmsolver-1.2.1_1 for building
===> Extracting for pcmsolver-1.2.1_1
=> SHA256 Checksum OK for PCMSolver-pcmsolver-v1.2.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for pcmsolver-1.2.1_1
===========================================================================
=======================<phase: build-depends >============================
===> pcmsolver-1.2.1_1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.12.3.txz
[120amd64-default-job-15] Installing cmake-3.12.3...
[120amd64-default-job-15] `-- Installing curl-7.61.1...
[120amd64-default-job-15] | `-- Installing ca_root_nss-3.40...
[120amd64-default-job-15] | `-- Extracting ca_root_nss-3.40: ........ done
[120amd64-default-job-15] | `-- Installing libnghttp2-1.34.0...
[120amd64-default-job-15] | `-- Extracting libnghttp2-1.34.0: .......... done
[120amd64-default-job-15] `-- Extracting curl-7.61.1: .......... done
[120amd64-default-job-15] `-- Installing expat-2.2.6_1...
[120amd64-default-job-15] `-- Extracting expat-2.2.6_1: .......... done
[120amd64-default-job-15] `-- Installing jsoncpp-1.8.1_4...
[120amd64-default-job-15] `-- Extracting jsoncpp-1.8.1_4: .......... done
[120amd64-default-job-15] `-- Installing libarchive-3.3.3,1...
<snip>
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
***************************************************************************
===> pcmsolver-1.2.1_1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of pcmsolver-1.2.1_1
===> pcmsolver-1.2.1_1 depends on file: /usr/local/bin/python2.7 - not found
===> Installing existing package /packages/All/python27-2.7.15.txz
[120amd64-default-job-15] Installing python27-2.7.15...
[120amd64-default-job-15] `-- Installing gettext-runtime-0.19.8.1_1...
[120amd64-default-job-15] | `-- Installing indexinfo-0.3.1...
[120amd64-default-job-15] | `-- Extracting indexinfo-0.3.1: .... done
[120amd64-default-job-15] `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[120amd64-default-job-15] `-- Installing libffi-3.2.1_2...
[120amd64-default-job-15] `-- Extracting libffi-3.2.1_2: .......... done
[120amd64-default-job-15] `-- Installing readline-7.0.3_1...
[120amd64-default-job-15] `-- Extracting readline-7.0.3_1: .......... done
[120amd64-default-job-15] Extracting python27-2.7.15: .......... done
Message from python27-2.7.15:
===========================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
tkinter x11-toolkits/py-tkinter
===========================================================================
===> pcmsolver-1.2.1_1 depends on file: /usr/local/bin/python2.7 - found
===> Returning to build of pcmsolver-1.2.1_1
===========================================================================
=======================<phase: lib-depends >============================
===> pcmsolver-1.2.1_1 depends on shared library: libflang.so - not found
===> Installing existing package /packages/All/flang-6.0.g20180904_1.txz
[120amd64-default-job-15] Installing flang-6.0.g20180904_1...
[120amd64-default-job-15] `-- Installing flang-clang-6.0.g20180904_2...
[120amd64-default-job-15] | `-- Installing libedit-3.1.20170329_2,1...
[120amd64-default-job-15] | `-- Extracting libedit-3.1.20170329_2,1: .......... done
[120amd64-default-job-15] | `-- Installing libxml2-2.9.7...
[120amd64-default-job-15] | `-- Extracting libxml2-2.9.7: .......... done
[120amd64-default-job-15] | `-- Installing llvm60-6.0.1_3...
[120amd64-default-job-15] | | `-- Installing perl5-5.26.2...
[120amd64-default-job-15] | | `-- Extracting perl5-5.26.2: .......... done
[120amd64-default-job-15] | `-- Extracting llvm60-6.0.1_3: .......... done
[120amd64-default-job-15] `-- Extracting flang-clang-6.0.g20180904_2: .......... done
[120amd64-default-job-15] `-- Installing libpgmath-g20180904...
[120amd64-default-job-15] `-- Extracting libpgmath-g20180904: ..... done
[120amd64-default-job-15] Extracting flang-6.0.g20180904_1: .......... done
Message from perl5-5.26.2:
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:
#!/usr/local/bin/perl
or
#!/usr/bin/env perl
The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
===> pcmsolver-1.2.1_1 depends on shared library: libflang.so - found (/usr/local/flang/lib/libflang.so)
===> Returning to build of pcmsolver-1.2.1_1
===========================================================================
=======================<phase: configure >============================
===> Configuring for pcmsolver-1.2.1_1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/pcmsolver/work/.build
-- The CXX compiler identification is Clang 6.0.1
-- The C compiler identification is Clang 6.0.1
-- The Fortran compiler identification is Flang 99.99.1
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working Fortran compiler: /usr/local/bin/flang
-- Check for working Fortran compiler: /usr/local/bin/flang -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/local/bin/flang supports Fortran 90
-- Checking whether /usr/local/bin/flang supports Fortran 90 -- yes
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- Setting (unspecified) option ENABLE_CXX11_SUPPORT: ON
-- Using C++11 standard
-- Setting (unspecified) option ENABLE_GPERFTOOLS: OFF
-- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.15")
-- Setting (unspecified) option PYMOD_INSTALL_LIBDIR: python
-- Could NOT find Boost
-- No libraries required, installing headers
-- Eigen 3.3.2 is located here: /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/external/eigen3/include/eigen3
-- Found ZLIB: /usr/lib/libz.so (found version "1.2.11")
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
BOOST_PYTHON_SUFFIX
CMAKE_MODULE_LINKER_FLAGS
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/science/pcmsolver/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for pcmsolver-1.2.1_1
/usr/local/bin/cmake -H/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1 -B/wrkdirs/usr/ports/science/pcmsolver/work/.build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/science/pcmsolver/work/.build/CMakeFiles /wrkdirs/usr/ports/science/pcmsolver/work/.build/CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
/usr/bin/make -f CMakeFiles/update_version.dir/build.make CMakeFiles/update_version.dir/depend
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1 /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1 /wrkdirs/usr/ports/science/pcmsolver/work/.build /wrkdirs/usr/ports/science/pcmsolver/work/.build /wrkdirs/usr/ports/science/pcmsolver/work/.build/CMakeFiles/update_version.dir/DependInfo.cmake
Scanning dependencies of target update_version
/usr/bin/make -f CMakeFiles/update_version.dir/build.make CMakeFiles/update_version.dir/build
[ 1%] Generating version info
cd /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1 && /usr/local/bin/python2.7 /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/tools/versioner.py --metaout /wrkdirs/usr/ports/science/pcmsolver/work/.build/metadata.py --cmakeout /wrkdirs/usr/ports/science/pcmsolver/work/.build/metadata.cmake --headerout /wrkdirs/usr/ports/science/pcmsolver/work/.build/include/VersionInfo.hpp
Blindly (no git) accepting release version: 1.2.1+zzzzzzz (recorded)
1.2.1 {} zzzzzzz 1.2.1.0 release 1.2.1 <-- 1.2.1+zzzzzzz
cd /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1 && /usr/local/bin/cmake -DWTO="/wrkdirs/usr/ports/science/pcmsolver/work/.build/share/cmake/PCMSolver" -DPN="PCMSolver" -P /wrkdirs/usr/ports/science/pcmsolver/work/.build/metadata.cmake
[ 1%] Built target update_version
/usr/bin/make -f include/CMakeFiles/generate-config-hpp.dir/build.make include/CMakeFiles/generate-config-hpp.dir/depend
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1 /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/include /wrkdirs/usr/ports/science/pcmsolver/work/.build /wrkdirs/usr/ports/science/pcmsolver/work/.build/include /wrkdirs/usr/ports/science/pcmsolver/work/.build/include/CMakeFiles/generate-config-hpp.dir/DependInfo.cmake
Scanning dependencies of target generate-config-hpp
/usr/bin/make -f include/CMakeFiles/generate-config-hpp.dir/build.make include/CMakeFiles/generate-config-hpp.dir/build
[ 1%] Built target generate-config-hpp
/usr/bin/make -f CMakeFiles/custom_boost.dir/build.make CMakeFiles/custom_boost.dir/depend
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1 /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1 /wrkdirs/usr/ports/science/pcmsolver/work/.build /wrkdirs/usr/ports/science/pcmsolver/work/.build /wrkdirs/usr/ports/science/pcmsolver/work/.build/CMakeFiles/custom_boost.dir/DependInfo.cmake
Scanning dependencies of target custom_boost
/usr/bin/make -f CMakeFiles/custom_boost.dir/build.make CMakeFiles/custom_boost.dir/build
[ 2%] Unpacking Boost
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost && /usr/local/bin/cmake -E tar xzf /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/cmake/downloaded/boost_1_54_0.zip
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost && /usr/local/bin/cmake -E touch boost.unpacked
[ 3%] Generating user-config.jam
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost && /usr/local/bin/cmake -E copy_if_different /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost/user-config.jam /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost/boost_1_54_0/user-config.jam
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost && /usr/local/bin/cmake -E touch boost.user-config
[ 4%] Installing Boost headers
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost/boost_1_54_0 && /usr/local/bin/cmake -E copy_directory /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost/boost_1_54_0/boost /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost/include/boost
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost/boost_1_54_0 && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost/boost.installed
[ 5%] Clean-up Boost
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost && /usr/local/bin/cmake -E remove_directory /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost/boost_1_54_0
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost/boost.cleanedup
[ 5%] Built target custom_boost
/usr/bin/make -f src/CMakeFiles/pcm-objlib.dir/build.make src/CMakeFiles/pcm-objlib.dir/depend
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1 /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/src /wrkdirs/usr/ports/science/pcmsolver/work/.build /wrkdirs/usr/ports/science/pcmsolver/work/.build/src /wrkdirs/usr/ports/science/pcmsolver/work/.build/src/CMakeFiles/pcm-objlib.dir/DependInfo.cmake
Scanning dependencies of target pcm-objlib
/usr/bin/make -f src/CMakeFiles/pcm-objlib.dir/build.make src/CMakeFiles/pcm-objlib.dir/build
[ 6%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/metal/metal_sphere.F90.o
cd /wrkdirs/usr/ports/science/pcmsolver/work/.build/src && /usr/local/bin/flang -DENABLE_TIMER -DHAS_CXX11 -DPCMSolver_EXPORTS -DTAYLOR_CXXIO -I/wrkdirs/usr/ports/science/pcmsolver/work/.build/modules -I/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/api -I/wrkdirs/usr/ports/science/pcmsolver/work/.build/include -I/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/include -I/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/src -isystem /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost/include -isystem /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/external/eigen3/include/eigen3 -isystem /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/external/libtaylor -isystem /usr/include -isystem /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/src/utils/getkw -O3 -DNDEBUG -J../modules -fPIC -c /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/src/metal/metal_sphere.F90 -o CMakeFiles/pcm-objlib.dir/metal/metal_sphere.F90.o
clang-6.0: warning: argument unused during compilation: '-isystem /wrkdirs/usr/ports/science/pcmsolver/work/.build/boost/include' [-Wunused-command-line-argument]
clang-6.0: warning: argument unused during compilation: '-isystem /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/external/eigen3/include/eigen3' [-Wunused-command-line-argument]
clang-6.0: warning: argument unused during compilation: '-isystem /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/external/libtaylor' [-Wunused-command-line-argument]
clang-6.0: warning: argument unused during compilation: '-isystem /usr/include' [-Wunused-command-line-argument]
clang-6.0: warning: argument unused during compilation: '-isystem /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/src/utils/getkw' [-Wunused-command-line-argument]
F90-F-0004-Unable to open MODULE file iso_c_binding.mod (/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/src/metal/metal_sphere.F90: 26)
F90/x86-64 FreeBSD Flang - 1.5 2017-05-01: compilation aborted
*** Error code 1
Stop.
make[3]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
*** Error code 1
Stop.
make: stopped in /usr/ports/science/pcmsolver
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