[package - 112armv6-quarterly][science/py-ScientificPython] Failed for py27-ScientificPython-2.9.4_1 in configure

Sun Oct 28 02:52:40 UTC 2018

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident:          $FreeBSD: branches/2018Q4/science/py-ScientificPython/Makefile 473624 2018-06-30 16:49:08Z yuri $
Log URL:        http://beefy15.nyi.freebsd.org/data/112armv6-quarterly/483211/logs/py27-ScientificPython-2.9.4_1.log
Build URL:      http://beefy15.nyi.freebsd.org/build.html?mastername=112armv6-quarterly&build=483211
Log:

=>> Building science/py-ScientificPython
build started at Sun Oct 28 02:52:05 UTC 2018
port directory: /usr/ports/science/py-ScientificPython
package name: py27-ScientificPython-2.9.4_1
building for: FreeBSD 112armv6-quarterly-job-16 11.2-RELEASE-p4 FreeBSD 11.2-RELEASE-p4 1102000 arm
maintained by: yuri at FreeBSD.org
Makefile ident:      $FreeBSD: branches/2018Q4/science/py-ScientificPython/Makefile 473624 2018-06-30 16:49:08Z yuri $
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yuri at FreeBSD.org
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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py27-ScientificPython-2.9.4_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[112armv6-quarterly-job-16] Installing pkg-1.10.5_5...
[112armv6-quarterly-job-16] Extracting pkg-1.10.5_5: .......... done
===>   py27-ScientificPython-2.9.4_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py27-ScientificPython-2.9.4_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-ScientificPython-2.9.4_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-ScientificPython-2.9.4_1 for building
=> SHA256 Checksum OK for ScientificPython-2.9.4.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-ScientificPython-2.9.4_1 for building
===>  Extracting for py27-ScientificPython-2.9.4_1
=> SHA256 Checksum OK for ScientificPython-2.9.4.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py27-ScientificPython-2.9.4_1
===========================================================================
=======================<phase: build-depends  >============================
===>   py27-ScientificPython-2.9.4_1 depends on package: py27-numpy>0 - not found
===>   Installing existing package /packages/All/py27-numpy-1.15.0,1.txz
[112armv6-quarterly-job-16] Installing py27-numpy-1.15.0,1...
[112armv6-quarterly-job-16] `-- Installing blas-3.5.0_4...
[112armv6-quarterly-job-16] |   `-- Installing gcc7-7.3.0_5...
[112armv6-quarterly-job-16] |   | `-- Installing binutils-2.30_5,1...
[112armv6-quarterly-job-16] |   |   `-- Installing gettext-runtime-0.19.8.1_1...
[112armv6-quarterly-job-16] |   |   | `-- Installing indexinfo-0.3.1...
[112armv6-quarterly-job-16] |   |   | `-- Extracting indexinfo-0.3.1: .... done
[112armv6-quarterly-job-16] |   |   `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[112armv6-quarterly-job-16] |   | `-- Extracting binutils-2.30_5,1: .......... done
[112armv6-quarterly-job-16] |   | `-- Installing gmp-6.1.2...
[112armv6-quarterly-job-16] |   | `-- Extracting gmp-6.1.2: .......... done
[112armv6-quarterly-job-16] |   | `-- Installing mpc-1.1.0_1...
[112armv6-quarterly-job-16] |   |   `-- Installing mpfr-4.0.1...
[112armv6-quarterly-job-16] |   |   `-- Extracting mpfr-4.0.1: .......... done
[112armv6-quarterly-job-16] |   | `-- Extracting mpc-1.1.0_1: ......... done
[112armv6-quarterly-job-16] |   `-- Extracting gcc7-7.3.0_5: .......... done
[112armv6-quarterly-job-16] `-- Extracting blas-3.5.0_4: ....... done
[112armv6-quarterly-job-16] `-- Installing cblas-1.0_9...
[112armv6-quarterly-job-16] `-- Extracting cblas-1.0_9: ......... done
[112armv6-quarterly-job-16] `-- Installing lapack-3.5.0_5...
[112armv6-quarterly-job-16] `-- Extracting lapack-3.5.0_5: .......... done
[112armv6-quarterly-job-16] `-- Installing py27-setuptools-40.0.0...
[112armv6-quarterly-job-16] |   `-- Installing python27-2.7.15...
[112armv6-quarterly-job-16] |   | `-- Installing libffi-3.2.1_2...
[112armv6-quarterly-job-16] |   | `-- Extracting libffi-3.2.1_2: .......... done
[112armv6-quarterly-job-16] |   | `-- Installing readline-7.0.3_1...
[112armv6-quarterly-job-16] |   | `-- Extracting readline-7.0.3_1: .......... done
[112armv6-quarterly-job-16] |   `-- Extracting python27-2.7.15: .......... done
[112armv6-quarterly-job-16] `-- Extracting py27-setuptools-40.0.0: .......... done
[112armv6-quarterly-job-16] `-- Installing suitesparse-5.2.0_1...
[112armv6-quarterly-job-16] |   `-- Installing metis-5.1.0_5...
[112armv6-quarterly-job-16] |   `-- Extracting metis-5.1.0_5: .......... done
[112armv6-quarterly-job-16] |   `-- Installing openblas-0.2.20_3,1...
[112armv6-quarterly-job-16] |   `-- Extracting openblas-0.2.20_3,1: ......... done
[112armv6-quarterly-job-16] `-- Extracting suitesparse-5.2.0_1: .......... done
[112armv6-quarterly-job-16] Extracting py27-numpy-1.15.0,1: .......... done
Message from gcc7-7.3.0_5:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc7

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_9:

===>   NOTICE:

The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python27-2.7.15:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
Message from metis-5.1.0_5:

===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   py27-ScientificPython-2.9.4_1 depends on package: py27-numpy>0 - found
===>   Returning to build of py27-ScientificPython-2.9.4_1
===>   py27-ScientificPython-2.9.4_1 depends on executable: cython-2.7 - not found
===>   Installing existing package /packages/All/py27-cython-0.28.2.txz
[112armv6-quarterly-job-16] Installing py27-cython-0.28.2...
[112armv6-quarterly-job-16] Extracting py27-cython-0.28.2: .......... done
===>   py27-ScientificPython-2.9.4_1 depends on executable: cython-2.7 - found
===>   Returning to build of py27-ScientificPython-2.9.4_1
===>   py27-ScientificPython-2.9.4_1 depends on package: py27-setuptools>0 - found
===>   py27-ScientificPython-2.9.4_1 depends on file: /usr/local/bin/python2.7 - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   py27-ScientificPython-2.9.4_1 depends on shared library: libnetcdf.so - not found
===>   Installing existing package /packages/All/netcdf-4.6.1_1.txz
[112armv6-quarterly-job-16] Installing netcdf-4.6.1_1...
[112armv6-quarterly-job-16] `-- Installing curl-7.61.1...
[112armv6-quarterly-job-16] |   `-- Installing ca_root_nss-3.40...
[112armv6-quarterly-job-16] |   `-- Extracting ca_root_nss-3.40: ........ done
[112armv6-quarterly-job-16] |   `-- Installing libnghttp2-1.33.0...
[112armv6-quarterly-job-16] |   `-- Extracting libnghttp2-1.33.0: .......... done
[112armv6-quarterly-job-16] `-- Extracting curl-7.61.1: .......... done
[112armv6-quarterly-job-16] `-- Installing hdf-szip-2.1_2...
[112armv6-quarterly-job-16] `-- Extracting hdf-szip-2.1_2: .......... done
[112armv6-quarterly-job-16] `-- Installing hdf5-1.10.2...
[112armv6-quarterly-job-16] `-- Extracting hdf5-1.10.2: .......... done
[112armv6-quarterly-job-16] `-- Installing pkgconf-1.4.2,1...
[112armv6-quarterly-job-16] `-- Extracting pkgconf-1.4.2,1: .......... done
[112armv6-quarterly-job-16] Extracting netcdf-4.6.1_1: .......... done
Message from ca_root_nss-3.40:

********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
===>   py27-ScientificPython-2.9.4_1 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so)
===>   Returning to build of py27-ScientificPython-2.9.4_1
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py27-ScientificPython-2.9.4_1
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 32, in <module>
    import numpy.distutils.misc_util
  File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module>
    from . import add_newdocs
  File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module>
    from numpy.lib import add_newdoc
  File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8, in <module>
    from .type_check import *
  File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", line 11, in <module>
    import numpy.core.numeric as _nx
  File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 26, in <module>
    raise ImportError(msg)
ImportError: 
Importing the multiarray numpy extension module failed.  Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control).  Otherwise reinstall numpy.

Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv at GCC_3.5"

*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-ScientificPython