[package - 112i386-default][biology/py-orange3-single-cell] Failed for py36-orange3-single-cell-0.8.2 in run-depends
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Oct 18 06:14:56 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: head/biology/py-orange3-single-cell/Makefile 482277 2018-10-17 07:31:34Z yuri $
Log URL: http://beefy10.nyi.freebsd.org/data/112i386-default/482319/logs/py36-orange3-single-cell-0.8.2.log
Build URL: http://beefy10.nyi.freebsd.org/build.html?mastername=112i386-default&build=482319
Log:
=>> Building biology/py-orange3-single-cell
build started at Thu Oct 18 06:13:43 UTC 2018
port directory: /usr/ports/biology/py-orange3-single-cell
package name: py36-orange3-single-cell-0.8.2
building for: FreeBSD 112i386-default-job-09 11.2-RELEASE-p4 FreeBSD 11.2-RELEASE-p4 i386
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/py-orange3-single-cell/Makefile 482277 2018-10-17 07:31:34Z yuri $
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===> The following configuration options are available for py36-orange3-single-cell-0.8.2:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri at FreeBSD.org
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--End PLIST_SUB--
--SUB_LIST--
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--End resource limits--
=======================<phase: check-sanity >============================
===> License AGPLv3+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py36-orange3-single-cell-0.8.2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5_5.txz
[112i386-default-job-09] Installing pkg-1.10.5_5...
[112i386-default-job-09] Extracting pkg-1.10.5_5: .......... done
===> py36-orange3-single-cell-0.8.2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py36-orange3-single-cell-0.8.2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License AGPLv3+ accepted by the user
=> biolab-orange3-single-cell-0.8.2_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/biolab/orange3-single-cell/tar.gz/0.8.2?dummy=/biolab-orange3-single-cell-0.8.2_GH0.tar.gz
fetch: https://codeload.github.com/biolab/orange3-single-cell/tar.gz/0.8.2?dummy=/biolab-orange3-single-cell-0.8.2_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/biolab/orange3-single-cell/tar.gz/0.8.2?dummy=/biolab-orange3-single-cell-0.8.2_GH0.tar.gz: size of remote file is not known
biolab-orange3-single-cell-0.8.2_GH0.tar.gz 0 B 0 Bps
===> Fetching all distfiles required by py36-orange3-single-cell-0.8.2 for building
===========================================================================
=======================<phase: checksum >============================
===> License AGPLv3+ accepted by the user
===> Fetching all distfiles required by py36-orange3-single-cell-0.8.2 for building
=> SHA256 Checksum OK for biolab-orange3-single-cell-0.8.2_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License AGPLv3+ accepted by the user
===> Fetching all distfiles required by py36-orange3-single-cell-0.8.2 for building
===> Extracting for py36-orange3-single-cell-0.8.2
=> SHA256 Checksum OK for biolab-orange3-single-cell-0.8.2_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py36-orange3-single-cell-0.8.2
===========================================================================
=======================<phase: build-depends >============================
===> py36-orange3-single-cell-0.8.2 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.2.1_2.txz
<snip>
[112i386-default-job-09] | `-- Extracting qt5-webengine-5.9.5_8: .......... done
[112i386-default-job-09] `-- Extracting py36-qt5-webengine-5.9.2_4: .......... done
[112i386-default-job-09] `-- Installing py36-scikit-learn-0.19.2...
[112i386-default-job-09] | `-- Installing py36-scipy-1.1.0_1...
[112i386-default-job-09] | `-- Extracting py36-scipy-1.1.0_1: .......... done
[112i386-default-job-09] `-- Extracting py36-scikit-learn-0.19.2: .......... done
[112i386-default-job-09] `-- Installing py36-serverfiles-0.2.1...
[112i386-default-job-09] `-- Extracting py36-serverfiles-0.2.1: .......... done
[112i386-default-job-09] `-- Installing py36-xlrd-1.0.0...
[112i386-default-job-09] `-- Extracting py36-xlrd-1.0.0: .......... done
[112i386-default-job-09] Extracting orange3-3.15.0: .......... done
Message from freeglut-3.0.0_1:
Joystick support is untested and it is unknown if it works.
Do not hesitate to contact x11 at FreeBSD.org if this causes issues.
Message from gcc7-7.3.0_5:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
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For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
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Message from cblas-1.0_9:
===> NOTICE:
The cblas port currently does not have a maintainer. As a result, it is
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More information about port maintainership is available at:
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Message from freetype2-2.9.1:
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
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The environment variable "FREETYPE_PROPERTIES" can be used to control the
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FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
cff:no-stem-darkening=1 \
autofitter:warping=1
This allows to select, say, the subpixel hinting mode at runtime for a given
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The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed).
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The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:
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or
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The first one will only work if you have a /usr/local/bin/perl,
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===========================================================================
Note that some standard Python modules are provided as separate ports
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bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
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The opencv-core port currently does not have a maintainer. As a result, it is
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the future. To volunteer to maintain this port, please create an issue at:
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===> py36-orange3-single-cell-0.8.2 depends on package: orange3>0 - found
===> Returning to build of py36-orange3-single-cell-0.8.2
===> py36-orange3-single-cell-0.8.2 depends on package: py36-orange3-bioinformatics>0 - not found
===> Installing existing package /packages/All/py36-orange3-bioinformatics-3.2.2.txz
[112i386-default-job-09] Installing py36-orange3-bioinformatics-3.2.2...
[112i386-default-job-09] `-- Installing py36-Genesis-PyAPI-1.2.1...
[112i386-default-job-09] | `-- Installing py36-slumber-0.7.1...
[112i386-default-job-09] | `-- Extracting py36-slumber-0.7.1: .......... done
[112i386-default-job-09] `-- Extracting py36-Genesis-PyAPI-1.2.1: .......... done
[112i386-default-job-09] `-- Installing py36-requests-cache-0.4.13...
[112i386-default-job-09] `-- Extracting py36-requests-cache-0.4.13: .......... done
[112i386-default-job-09] Extracting py36-orange3-bioinformatics-3.2.2: .......... done
===> py36-orange3-single-cell-0.8.2 depends on package: py36-orange3-bioinformatics>0 - found
===> Returning to build of py36-orange3-single-cell-0.8.2
===> py36-orange3-single-cell-0.8.2 depends on package: py36-astropy>0 - not found
===> Installing existing package /packages/All/py36-astropy-1.1.2_1.txz
[112i386-default-job-09] Installing py36-astropy-1.1.2_1...
[112i386-default-job-09] Extracting py36-astropy-1.1.2_1: .......... done
===> py36-orange3-single-cell-0.8.2 depends on package: py36-astropy>0 - found
===> Returning to build of py36-orange3-single-cell-0.8.2
===> py36-orange3-single-cell-0.8.2 depends on package: py36-fastdtw>0 - not found
===> Installing existing package /packages/All/py36-fastdtw-0.3.2.txz
[112i386-default-job-09] Installing py36-fastdtw-0.3.2...
[112i386-default-job-09] Extracting py36-fastdtw-0.3.2: .......... done
===> py36-orange3-single-cell-0.8.2 depends on package: py36-fastdtw>0 - found
===> Returning to build of py36-orange3-single-cell-0.8.2
===> py36-orange3-single-cell-0.8.2 depends on package: py36-joblib>=0.11 - not found
===> Installing existing package /packages/All/py36-joblib-0.9.4.txz
[112i386-default-job-09] Installing py36-joblib-0.9.4...
the most recent version of py36-joblib-0.9.4 is already installed
===> py36-orange3-single-cell-0.8.2 depends on package: py36-joblib>=0.11 - not found
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/py-orange3-single-cell
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