[package - 111mips-quarterly][biology/stacks] Failed for stacks-1.48 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Jun 19 01:59:27 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb at FreeBSD.org
Last committer: jwb at FreeBSD.org
Ident: $FreeBSD: branches/2018Q2/biology/stacks/Makefile 466048 2018-03-31 13:16:05Z jwb $
Log URL: http://beefy14.nyi.freebsd.org/data/111mips-quarterly/472729/logs/stacks-1.48.log
Build URL: http://beefy14.nyi.freebsd.org/build.html?mastername=111mips-quarterly&build=472729
Log:
=>> Building biology/stacks
build started at Tue Jun 19 01:59:01 UTC 2018
port directory: /usr/ports/biology/stacks
package name: stacks-1.48
building for: FreeBSD 111mips-quarterly-job-07 11.1-RELEASE-p10 FreeBSD 11.1-RELEASE-p10 1101001 mips
maintained by: jwb at FreeBSD.org
Makefile ident: $FreeBSD: branches/2018Q2/biology/stacks/Makefile 466048 2018-03-31 13:16:05Z jwb $
Poudriere version: 3.2.7-1-g7087c444
Host OSVERSION: 1200062
Jail OSVERSION: 1101001
Job Id: 07
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--MAINTAINER--
jwb at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/stacks/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/stacks/work HOME=/wrkdirs/usr/ports/biology/stacks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/stacks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/stacks/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/stacks/work HOME=/wrkdirs/usr/ports/biology/stacks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/stacks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -lpthread" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/stacks" EXAMPLESDIR="share/examples/stacks" DATADIR="share/stacks" WWWDIR="www/stacks" ETCDIR="etc/stacks"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/stacks DOCSDIR=/usr/local/share/doc/stacks EXAMPLESDIR=/usr/local/share/examples/stacks WWWDIR=/usr/local/www/stacks ETCDIR=/usr/local/etc/stacks
--End SUB_LIST--
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ARCH=${MACHINE_ARCH}
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# XXX: We really need this but cannot use it while 'make checksum' does not
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# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=Using built-in specs. Target: mips-undermydesk-freebsd Configured with: FreeBSD/mips system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-EB" "-EB" "-melf32btsmip_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
CC_OUTPUT_9d218390_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_9d218390_f0b4d593=yes
CC_OUTPUT_9d218390_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_9d218390_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_9d218390_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_9d218390_b2657cc3=yes
CC_OUTPUT_9d218390_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
_OBJC_CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_9d218390=none
ARCH=mips
OPSYS=FreeBSD
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OSREL=11.1
OSVERSION=1101001
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
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GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
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CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
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cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 131072
stack size (kbytes, -s) 8192
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> stacks-1.48 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5.txz
[111mips-quarterly-job-07] Installing pkg-1.10.5...
[111mips-quarterly-job-07] Extracting pkg-1.10.5: .......... done
===> stacks-1.48 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of stacks-1.48
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by stacks-1.48 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by stacks-1.48 for building
=> SHA256 Checksum OK for stacks-1.48.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by stacks-1.48 for building
===> Extracting for stacks-1.48
=> SHA256 Checksum OK for stacks-1.48.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for stacks-1.48
===> Applying FreeBSD patches for stacks-1.48
===========================================================================
=======================<phase: build-depends >============================
===> stacks-1.48 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.2.1_2.txz
[111mips-quarterly-job-07] Installing gmake-4.2.1_2...
[111mips-quarterly-job-07] `-- Installing gettext-runtime-0.19.8.1_1...
[111mips-quarterly-job-07] | `-- Installing indexinfo-0.3.1...
[111mips-quarterly-job-07] | `-- Extracting indexinfo-0.3.1: .... done
[111mips-quarterly-job-07] `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[111mips-quarterly-job-07] Extracting gmake-4.2.1_2: .......... done
===> stacks-1.48 depends on executable: gmake - found
===> Returning to build of stacks-1.48
===> stacks-1.48 depends on file: /usr/local/bin/python2.7 - not found
===> Installing existing package /packages/All/python27-2.7.15.txz
[111mips-quarterly-job-07] Installing python27-2.7.15...
[111mips-quarterly-job-07] `-- Installing libffi-3.2.1_2...
[111mips-quarterly-job-07] `-- Extracting libffi-3.2.1_2: .......... done
[111mips-quarterly-job-07] `-- Installing readline-7.0.3_1...
[111mips-quarterly-job-07] `-- Extracting readline-7.0.3_1: .......... done
[111mips-quarterly-job-07] Extracting python27-2.7.15: .......... done
Message from python27-2.7.15:
===========================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
tkinter x11-toolkits/py-tkinter
===========================================================================
===> stacks-1.48 depends on file: /usr/local/bin/python2.7 - found
===> Returning to build of stacks-1.48
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for stacks-1.48
configure: loading site script /usr/ports/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether /nxb-bin/usr/bin/c++ accepts -g... yes
checking for style of include used by gmake... GNU
checking dependency style of /nxb-bin/usr/bin/c++... gcc3
checking for gcc... /nxb-bin/usr/bin/cc
checking whether we are using the GNU C compiler... yes
checking whether /nxb-bin/usr/bin/cc accepts -g... yes
checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed
checking dependency style of /nxb-bin/usr/bin/cc... gcc3
checking whether /nxb-bin/usr/bin/cc and cc understand -c and -o together... yes
checking whether /nxb-bin/usr/bin/c++ supports C++11 features by default... no
checking whether /nxb-bin/usr/bin/c++ supports C++11 features with -std=gnu++11... no
checking whether /nxb-bin/usr/bin/c++ supports C++11 features with -std=gnu++0x... no
checking whether /nxb-bin/usr/bin/c++ supports C++11 features with -std=c++11... no
checking whether /nxb-bin/usr/bin/c++ supports C++11 features with -std=c++0x... no
checking whether /nxb-bin/usr/bin/c++ supports C++11 features with +std=c++11... no
checking whether /nxb-bin/usr/bin/c++ supports C++11 features with -h std=c++11... no
configure: error: *** A compiler with support for C++11 language features is required.
===> Script "configure" failed unexpectedly.
Please report the problem to jwb at FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/biology/stacks/work/stacks-1.48/config.log" including the
output of the failure of your make command. Also, it might be a good idea to
provide an overview of all packages installed on your system (e.g. a
/usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/stacks
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