[package - 111armv6-quarterly][science/PETSc] Failed for PETSc-3.8.4 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu May 3 21:09:53 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: branches/2018Q2/science/PETSc/Makefile 465576 2018-03-26 10:11:16Z yuri $
Log URL: http://beefy15.nyi.freebsd.org/data/111armv6-quarterly/468899/logs/PETSc-3.8.4.log
Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=111armv6-quarterly&build=468899
Log:
=>> Building science/PETSc
build started at Thu May 3 21:09:11 UTC 2018
port directory: /usr/ports/science/PETSc
package name: PETSc-3.8.4
building for: FreeBSD 111armv6-quarterly-job-10 11.1-RELEASE-p6 FreeBSD 11.1-RELEASE-p6 1101001 arm
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: branches/2018Q2/science/PETSc/Makefile 465576 2018-03-26 10:11:16Z yuri $
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=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> PETSc-3.8.4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5.txz
[111armv6-quarterly-job-10] Installing pkg-1.10.5...
[111armv6-quarterly-job-10] Extracting pkg-1.10.5: .......... done
===> PETSc-3.8.4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of PETSc-3.8.4
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by PETSc-3.8.4 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by PETSc-3.8.4 for building
=> SHA256 Checksum OK for petsc-3.8.4.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by PETSc-3.8.4 for building
===> Extracting for PETSc-3.8.4
=> SHA256 Checksum OK for petsc-3.8.4.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for PETSc-3.8.4
<snip>
[111armv6-quarterly-job-10] | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[111armv6-quarterly-job-10] `-- Extracting binutils-2.30_2,1: .......... done
[111armv6-quarterly-job-10] `-- Installing gmp-6.1.2...
[111armv6-quarterly-job-10] `-- Extracting gmp-6.1.2: .......... done
[111armv6-quarterly-job-10] `-- Installing mpc-1.1.0...
[111armv6-quarterly-job-10] | `-- Installing mpfr-3.1.6...
[111armv6-quarterly-job-10] | `-- Extracting mpfr-3.1.6: .......... done
[111armv6-quarterly-job-10] `-- Extracting mpc-1.1.0: ...... done
[111armv6-quarterly-job-10] Extracting gcc6-6.4.0_4: .......... done
Message from gcc6-6.4.0_4:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc6
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> PETSc-3.8.4 depends on executable: gfortran6 - found
===> Returning to build of PETSc-3.8.4
===> PETSc-3.8.4 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.2.1_2.txz
[111armv6-quarterly-job-10] Installing gmake-4.2.1_2...
[111armv6-quarterly-job-10] Extracting gmake-4.2.1_2: .......... done
===> PETSc-3.8.4 depends on executable: gmake - found
===> Returning to build of PETSc-3.8.4
===> PETSc-3.8.4 depends on file: /usr/local/bin/python2.7 - not found
===> Installing existing package /packages/All/python27-2.7.14_1.txz
[111armv6-quarterly-job-10] Installing python27-2.7.14_1...
[111armv6-quarterly-job-10] `-- Installing libffi-3.2.1_2...
[111armv6-quarterly-job-10] `-- Extracting libffi-3.2.1_2: .......... done
[111armv6-quarterly-job-10] `-- Installing readline-7.0.3_1...
[111armv6-quarterly-job-10] `-- Extracting readline-7.0.3_1: .......... done
[111armv6-quarterly-job-10] Extracting python27-2.7.14_1: .......... done
Message from python27-2.7.14_1:
===========================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
tkinter x11-toolkits/py-tkinter
===========================================================================
===> PETSc-3.8.4 depends on file: /usr/local/bin/python2.7 - found
===> Returning to build of PETSc-3.8.4
===> PETSc-3.8.4 depends on file: /usr/local/bin/as - found
===> PETSc-3.8.4 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found
===> Installing existing package /packages/All/libX11-1.6.5,1.txz
[111armv6-quarterly-job-10] Installing libX11-1.6.5,1...
[111armv6-quarterly-job-10] `-- Installing kbproto-1.0.7...
[111armv6-quarterly-job-10] `-- Extracting kbproto-1.0.7: .......... done
[111armv6-quarterly-job-10] `-- Installing libXau-1.0.8_3...
[111armv6-quarterly-job-10] | `-- Installing xproto-7.0.31...
[111armv6-quarterly-job-10] | `-- Extracting xproto-7.0.31: .......... done
[111armv6-quarterly-job-10] `-- Extracting libXau-1.0.8_3: .......... done
[111armv6-quarterly-job-10] `-- Installing libXdmcp-1.1.2...
[111armv6-quarterly-job-10] `-- Extracting libXdmcp-1.1.2: ......... done
[111armv6-quarterly-job-10] `-- Installing libxcb-1.12_2...
[111armv6-quarterly-job-10] | `-- Installing libpthread-stubs-0.4...
[111armv6-quarterly-job-10] | `-- Extracting libpthread-stubs-0.4: . done
[111armv6-quarterly-job-10] | `-- Installing libxml2-2.9.7...
[111armv6-quarterly-job-10] | `-- Extracting libxml2-2.9.7: .......... done
[111armv6-quarterly-job-10] `-- Extracting libxcb-1.12_2: .......... done
[111armv6-quarterly-job-10] Extracting libX11-1.6.5,1: .......... done
===> PETSc-3.8.4 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===> Returning to build of PETSc-3.8.4
===========================================================================
=======================<phase: lib-depends >============================
===> PETSc-3.8.4 depends on shared library: libmpich.so - not found
===> Installing existing package /packages/All/mpich2-1.5_9,5.txz
[111armv6-quarterly-job-10] Installing mpich2-1.5_9,5...
[111armv6-quarterly-job-10] `-- Installing bash-4.4.19...
[111armv6-quarterly-job-10] `-- Extracting bash-4.4.19: .......... done
[111armv6-quarterly-job-10] `-- Installing libXt-1.1.5,1...
[111armv6-quarterly-job-10] | `-- Installing libSM-1.2.2_3,1...
[111armv6-quarterly-job-10] | | `-- Installing libICE-1.0.9_1,1...
[111armv6-quarterly-job-10] | | `-- Extracting libICE-1.0.9_1,1: .......... done
[111armv6-quarterly-job-10] | `-- Extracting libSM-1.2.2_3,1: .......... done
[111armv6-quarterly-job-10] `-- Extracting libXt-1.1.5,1: .......... done
[111armv6-quarterly-job-10] Extracting mpich2-1.5_9,5: .......... done
Message from mpich2-1.5_9,5:
=======================================================================
MPICH-2 has been installed under /usr/local.
/!\ IMPORTANT /!\
Please change the password in /usr/local/etc/mpd.conf
=======================================================================
===> PETSc-3.8.4 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so)
===> Returning to build of PETSc-3.8.4
===> PETSc-3.8.4 depends on shared library: libblas.so - not found
===> Installing existing package /packages/All/blas-3.5.0_4.txz
[111armv6-quarterly-job-10] Installing blas-3.5.0_4...
[111armv6-quarterly-job-10] Extracting blas-3.5.0_4: ....... done
===> PETSc-3.8.4 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so)
===> Returning to build of PETSc-3.8.4
===> PETSc-3.8.4 depends on shared library: liblapack.so - not found
===> Installing existing package /packages/All/lapack-3.5.0_4.txz
[111armv6-quarterly-job-10] Installing lapack-3.5.0_4...
[111armv6-quarterly-job-10] Extracting lapack-3.5.0_4: .......... done
===> PETSc-3.8.4 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so)
===> Returning to build of PETSc-3.8.4
===========================================================================
=======================<phase: configure >============================
===> Configuring for PETSc-3.8.4
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
TESTING: configureExternalPackagesDir from config.framework(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/framework.py:830)
TESTING: configureDebuggers from config.utilities.debuggers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/utilities/debuggers.py:22)
TESTING: configureGit from config.sourceControl(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/sourceControl.py:24)
TESTING: configureMercurial from config.sourceControl(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/sourceControl.py:35)
TESTING: configureCLanguage from PETSc.options.languages(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/languages.py:27)
TESTING: configureDirectories from PETSc.options.petscdir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/petscdir.py:23)
TESTING: getDatafilespath from PETSc.options.dataFilesPath(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/dataFilesPath.py:29)
TESTING: configureInstallationMethod from PETSc.options.petscclone(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/petscclone.py:20)
TESTING: configureArchitecture from PETSc.options.arch(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/arch.py:36)
TESTING: setInstallDir from PETSc.options.installDir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/installDir.py:35)
TESTING: saveReconfigure from PETSc.options.installDir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/installDir.py:75)
TESTING: cleanInstallDir from PETSc.options.installDir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/installDir.py:68)
TESTING: configureInstallDir from PETSc.options.installDir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/installDir.py:52)
TESTING: restoreReconfigure from PETSc.options.installDir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/installDir.py:88)
TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/externalpackagesdir.py:15)
TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/PETSc/options/externalpackagesdir.py:22)
TESTING: printEnvVariables from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/setCompilers.py:1614)
TESTING: resetEnvCompilers from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/setCompilers.py:1621)
===============================================================================
***** WARNING: CC (set to /nxb-bin/usr/bin/cc) found in environment variables - ignoring
use ./configure CC=$CC if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: CXX (set to /nxb-bin/usr/bin/c++) found in environment variables - ignoring
use ./configure CXX=$CXX if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: FC (set to gfortran6) found in environment variables - ignoring
use ./configure FC=$FC if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: F77 (set to gfortran6) found in environment variables - ignoring
use ./configure F77=$F77 if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: FCFLAGS (set to -Wl,-rpath=/usr/local/lib/gcc6) found in environment variables - ignoring
use ./configure FCFLAGS=$FCFLAGS if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: FFLAGS (set to -O -Wl,-rpath=/usr/local/lib/gcc6) found in environment variables - ignoring
use ./configure FFLAGS=$FFLAGS if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: CPP (set to /nxb-bin/usr/bin/cpp) found in environment variables - ignoring
use ./configure CPP=$CPP if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: MAKEFLAGS (set to .MAKE.LEVEL.ENV=MAKELEVEL ARCH=armv6 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.1 OSVERSION=1101001 PYTHONBASE=/usr/local _OSRELEASE=11.1-RELEASE-p6) found in environment variables - ignoring
use ./configure MAKEFLAGS=$MAKEFLAGS if you really want to use that value ******
===============================================================================
===============================================================================
***** WARNING: AR (set to /usr/local/bin/ar) found in environment variables - ignoring
use ./configure AR=$AR if you really want to use that value ******
===============================================================================
TESTING: checkEnvCompilers from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/setCompilers.py:1651)
TESTING: checkMPICompilerOverride from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/setCompilers.py:1586)
TESTING: requireMpiLdPath from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/setCompilers.py:1605)
TESTING: checkVendor from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/setCompilers.py:426)
TESTING: checkInitialFlags from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/setCompilers.py:436)
TESTING: checkCCompiler from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config/BuildSystem/config/setCompilers.py:568)
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
-------------------------------------------------------------------------------
MPI compiler wrappers in /usr/local/bin do not work. See http://www.mcs.anl.gov/petsc/documentation/faq.html#mpi-compilers
*******************************************************************************
===> Script "configure" failed unexpectedly.
Please report the problem to yuri at FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.4/config.log" including the
output of the failure of your make command. Also, it might be a good idea to
provide an overview of all packages installed on your system (e.g. a
/usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1
Stop.
make: stopped in /usr/ports/science/PETSc
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