[package - head-armv6-default][biology/lamarc] Failed for lamarc-2.1.8_1, 1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sat Feb 24 22:53:21 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports at FreeBSD.org
Last committer: amdmi3 at FreeBSD.org
Ident: $FreeBSD: head/biology/lamarc/Makefile 420392 2016-08-18 09:31:58Z amdmi3 $
Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p462764_s329886/logs/lamarc-2.1.8_1,1.log
Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p462764_s329886
Log:
=>> Building biology/lamarc
build started at Sat Feb 24 22:45:45 UTC 2018
port directory: /usr/ports/biology/lamarc
package name: lamarc-2.1.8_1,1
building for: FreeBSD head-armv6-default-job-12 12.0-CURRENT FreeBSD 12.0-CURRENT 1200058 arm
maintained by: ports at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/lamarc/Makefile 420392 2016-08-18 09:31:58Z amdmi3 $
Poudriere version: 3.2.4-56-g0fd5b0e3
Host OSVERSION: 1200054
Jail OSVERSION: 1200058
Job Id: 12
!!! Jail is newer than host. (Jail: 1200058, Host: 1200054) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200058
UNAME_v=FreeBSD 12.0-CURRENT 1200058
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
QEMU_EMULATING=1
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.4-56-g0fd5b0e3
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for lamarc-2.1.8_1,1:
DOCS=on: Build and/or install documentation
WXGTK=off: wxGTK GUI toolkit support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
ports at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--disable-converter --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/lamarc/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/lamarc/work HOME=/wrkdirs/usr/ports/biology/lamarc/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/lamarc/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/lamarc/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/lamarc/work HOME=/wrkdirs/usr/ports/biology/lamarc/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/lamarc/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/lamarc" EXAMPLESDIR="share/examples/lamarc" DATADIR="share/lamarc" WWWDIR="www/lamarc" ETCDIR="etc/lamarc"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/lamarc DOCSDIR=/usr/local/share/doc/lamarc EXAMPLESDIR=/usr/local/share/examples/lamarc WWWDIR=/usr/local/www/lamarc ETCDIR=/usr/local/etc/lamarc
--End SUB_LIST--
---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=armv6
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=12.0
OSVERSION=1200058
PYTHONBASE=/usr/local
UID=0
_OSRELEASE=12.0-CURRENT
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> NOTICE:
The lamarc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> lamarc-2.1.8_1,1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.5.txz
[head-armv6-default-job-12] Installing pkg-1.10.5...
[head-armv6-default-job-12] Extracting pkg-1.10.5: .......... done
===> lamarc-2.1.8_1,1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of lamarc-2.1.8_1,1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
The lamarc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
<snip>
InputStream& extract_uniform_int(InputStream& is, UniformInt& ud, Impl& impl)
^
In file included from src/report/xml_report.cpp:15:
In file included from ./src/force/force.h:16:
In file included from ./src/postlike/plforces.h:29:
./src/tree/summary.h:33:1: warning: class 'Interval' was previously declared as a struct [-Wmismatched-tags]
class Interval;
^
./src/tree/intervaldata.h:55:8: note: previous use is here
struct Interval
^
./src/tree/summary.h:33:1: note: did you mean struct here?
class Interval;
^~~~~
struct
./src/tree/summary.h:195:52: warning: unused parameter 'totals' [-Wunused-parameter]
virtual void AdjustSummary(const DoubleVec1d & totals, long region) {};
^
./src/tree/summary.h:195:65: warning: unused parameter 'region' [-Wunused-parameter]
virtual void AdjustSummary(const DoubleVec1d & totals, long region) {};
^
In file included from src/report/xml_report.cpp:15:
In file included from ./src/force/force.h:16:
./src/postlike/plforces.h:401:45: warning: unused parameter 'param' [-Wunused-parameter]
double DlnWait (const vector < double >¶m,
^
./src/postlike/plforces.h:402:41: warning: unused parameter 'treedata' [-Wunused-parameter]
const TreeSummary * treedata,
^
./src/postlike/plforces.h:403:33: warning: unused parameter 'whichparam' [-Wunused-parameter]
const long &whichparam) { assert(false); return 0;};
^
./src/postlike/plforces.h:405:46: warning: unused parameter 'param' [-Wunused-parameter]
double DlnPoint (const vector < double >¶m,
^
./src/postlike/plforces.h:406:42: warning: unused parameter 'treedata' [-Wunused-parameter]
const TreeSummary * treedata,
^
./src/postlike/plforces.h:407:34: warning: unused parameter 'whichparam' [-Wunused-parameter]
const long &whichparam) { assert(false); return 0;};
^
./src/postlike/plforces.h:468:44: warning: unused parameter 'param' [-Wunused-parameter]
double lnWait (const vector < double >¶m,
^
./src/postlike/plforces.h:469:40: warning: unused parameter 'treedata' [-Wunused-parameter]
const TreeSummary * treedata) { return 1.0; };
^
./src/postlike/plforces.h:471:45: warning: unused parameter 'param' [-Wunused-parameter]
double lnPoint (const vector < double >¶m,
^
./src/postlike/plforces.h:472:45: warning: unused parameter 'lparam' [-Wunused-parameter]
const vector < double >&lparam,
^
./src/postlike/plforces.h:473:41: warning: unused parameter 'treedata' [-Wunused-parameter]
const TreeSummary * treedata) { return 1.0; };
^
./src/postlike/plforces.h:475:45: warning: unused parameter 'param' [-Wunused-parameter]
double DlnWait (const vector < double >¶m,
^
./src/postlike/plforces.h:476:41: warning: unused parameter 'treedata' [-Wunused-parameter]
const TreeSummary * treedata,
^
./src/postlike/plforces.h:477:33: warning: unused parameter 'whichparam' [-Wunused-parameter]
const long &whichparam) { return 1.0; };
^
./src/postlike/plforces.h:479:46: warning: unused parameter 'param' [-Wunused-parameter]
double DlnPoint (const vector < double >¶m,
^
./src/postlike/plforces.h:480:42: warning: unused parameter 'treedata' [-Wunused-parameter]
const TreeSummary * treedata,
^
./src/postlike/plforces.h:481:34: warning: unused parameter 'whichparam' [-Wunused-parameter]
const long &whichparam) { return 1.0; };
^
In file included from src/report/xml_report.cpp:15:
./src/force/force.h:256:61: warning: unused parameter 'fs' [-Wunused-parameter]
virtual void ModifyEvents(const ForceSummary& fs,
^
./src/force/force.h:549:61: warning: unused parameter 'mystatus' [-Wunused-parameter]
virtual std::string MakeStatusXML(const std::string& mystatus) const { return string(""); };
^
./src/force/force.h:583:61: warning: unused parameter 'mystatus' [-Wunused-parameter]
virtual std::string MakeStatusXML(const std::string& mystatus) const { return string(""); };
^
In file included from src/report/xml_report.cpp:18:
In file included from ./src/datalike/region.h:38:
./src/tree/newick.h:46:37: warning: unused parameter 'stump' [-Wunused-parameter]
virtual void ToLamarcTree(Tree& stump) { assert(false); }; // instantiating NULL tree
^
In file included from src/report/xml_report.cpp:19:
./src/report/reportpage.h:29:1: warning: class 'PlotStruct' was previously declared as a struct [-Wmismatched-tags]
class PlotStruct;
^
./src/postlike/plotstat.h:26:8: note: previous use is here
struct PlotStruct
^
./src/report/reportpage.h:29:1: note: did you mean struct here?
class PlotStruct;
^~~~~
struct
./src/report/reportpage.h:212:10: warning: 'ProfPage::PrintTable' hides overloaded virtual function [-Woverloaded-virtual]
void PrintTable(StringVec3d& wrappedtable);
^
./src/report/reportpage.h:106:18: note: hidden overloaded virtual function 'ReportPage::PrintTable' declared here: different number of parameters (4 vs 1)
virtual void PrintTable(vector<string> &colhdr, StringVec2d &rowhdr,
^
src/report/xml_report.cpp:39:36: warning: unused parameter 'tag' [-Wunused-parameter]
force_type tag,
^
In file included from src/report/xml_report.cpp:13:
In file included from ./src/control/chainmanager.h:30:
In file included from ./src/control/chainpack.h:18:
In file included from ./src/control/chainout.h:31:
In file included from /usr/include/c++/v1/map:442:
/usr/include/c++/v1/__tree:1819:22: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings]
__trigger_diagnostics()), "");
^
/usr/include/c++/v1/set:400:28: note: in instantiation of member function 'std::__1::__tree<std::__1::pair<long, long>, rangecmp, std::__1::allocator<std::__1::pair<long, long> > >::~__tree' requested here
class _LIBCPP_TEMPLATE_VIS set
^
/usr/include/c++/v1/__tree:970:7: note: from 'diagnose_if' attribute on '__trigger_diagnostics':
_LIBCPP_DIAGNOSE_WARNING(!__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/v1/__config:1130:20: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
__attribute__((diagnose_if(__VA_ARGS__, "warning")))
^ ~~~~~~~~~~~
77 warnings generated.
mv -f .deps/lamarc-xml_report.Tpo .deps/lamarc-xml_report.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -fno-strict-aliasing -MT lamarc-mathx.o -MD -MP -MF .deps/lamarc-mathx.Tpo -c -o lamarc-mathx.o `test -f 'src/tools/mathx.cpp' || echo './'`src/tools/mathx.cpp
In file included from src/tools/mathx.cpp:21:
In file included from ./src/control/registry.h:22:
In file included from ./src/tools/random.h:15:
In file included from ./boost/random.hpp:42:
In file included from ./boost/random/ranlux.hpp:21:
./boost/random/discard_block.hpp:68:38: warning: unused parameter 'x' [-Wunused-parameter]
static bool validation(result_type x) { return true; } // dummy
^
In file included from src/tools/mathx.cpp:21:
In file included from ./src/control/registry.h:22:
In file included from ./src/tools/random.h:15:
In file included from ./boost/random.hpp:53:
In file included from ./boost/random/random_number_generator.hpp:22:
In file included from ./boost/random/uniform_int.hpp:26:
./boost/random/uniform_smallint.hpp:39:63: warning: unused parameter 'ud' [-Wunused-parameter]
InputStream& extract_uniform_int(InputStream& is, UniformInt& ud, Impl& impl)
^
In file included from src/tools/mathx.cpp:21:
In file included from ./src/control/registry.h:24:
In file included from ./src/control/regiongammainfo.h:16:
./src/force/paramstat.h:99:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:100:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_identical); };
^
./src/force/paramstat.h:121:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:122:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:163:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:164:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:181:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:182:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:201:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:202:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
./src/force/paramstat.h:219:59: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); };
^
./src/force/paramstat.h:220:54: warning: unused parameter 'ftype' [-Wunused-parameter]
virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); };
^
src/tools/mathx.cpp:781:12: error: no matching function for call to 'make_pair'
return std::make_pair<DoubleVec1d, DoubleVec2d>(eigvals, eigvecs);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/v1/utility:639:1: note: candidate function not viable: no known conversion from 'DoubleVec1d' (aka 'vector<double>') to 'std::__1::vector<double, std::__1::allocator<double> > &&' for 1st argument
make_pair(_T1&& __t1, _T2&& __t2)
^
14 warnings and 1 error generated.
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/lamarc/work/lamarc-2.1.8
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/lamarc
More information about the freebsd-pkg-fallout
mailing list