[package - head-i386-default][biology/avida] Failed for avida-2.12.4 in build

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Sat Feb 24 14:44:26 UTC 2018


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     ports at FreeBSD.org
Last committer: linimon at FreeBSD.org
Ident:          $FreeBSD: head/biology/avida/Makefile 456901 2017-12-21 10:23:19Z linimon $
Log URL:        http://beefy11.nyi.freebsd.org/data/head-i386-default/p462764_s329886/logs/avida-2.12.4.log
Build URL:      http://beefy11.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p462764_s329886
Log:

=>> Building biology/avida
build started at Sat Feb 24 14:42:36 UTC 2018
port directory: /usr/ports/biology/avida
package name: avida-2.12.4
building for: FreeBSD head-i386-default-job-20 12.0-CURRENT FreeBSD 12.0-CURRENT 1200058 i386
maintained by: ports at FreeBSD.org
Makefile ident:      $FreeBSD: head/biology/avida/Makefile 456901 2017-12-21 10:23:19Z linimon $
Poudriere version: 3.2.4-56-g0fd5b0e3
Host OSVERSION: 1200054
Jail OSVERSION: 1200058
Job Id: 20




!!! Jail is newer than host. (Jail: 1200058, Host: 1200054) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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UNAME_v=FreeBSD 12.0-CURRENT 1200058
UNAME_r=12.0-CURRENT
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---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for avida-2.12.4:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
ports at FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/avida/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/avida/work  HOME=/wrkdirs/usr/ports/biology/avida/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/avida/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/avida/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/avida/work  HOME=/wrkdirs/usr/ports/biology/avida/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/avida/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/avida/work/stage PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" CMAKE_BUILD_TYPE="release" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/avida"  EXAMPLESDIR="share/examples/avida"  DATADIR="share/avida"  WWWDIR="www/avida"  ETCDIR="etc/avida"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/avida DOCSDIR=/usr/local/share/doc/avida EXAMPLESDIR=/usr/local/share/examples/avida  WWWDIR=/usr/local/www/avida ETCDIR=/usr/local/etc/avida
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=i386
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---End make.conf---
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data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
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locked memory           (kbytes, -l)  unlimited
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socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>   NOTICE:

The avida port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   avida-2.12.4 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5.txz
[head-i386-default-job-20] Installing pkg-1.10.5...
[head-i386-default-job-20] Extracting pkg-1.10.5: .......... done
===>   avida-2.12.4 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of avida-2.12.4
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>   NOTICE:

The avida port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by avida-2.12.4 for building
===========================================================================
=======================<phase: checksum       >============================
===>   NOTICE:

The avida port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by avida-2.12.4 for building
=> SHA256 Checksum OK for avida-2.12.4-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
<snip>
  const cRawBitArray & operator=(const cRawBitArray & in_array)
                                                      ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDeme.h:29:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:31:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/cRandom.h:268:127: warning: unused parameter 'rng' [-Wunused-parameter]
void sample_without_replacement(ForwardIterator first, ForwardIterator last, OutputIterator ofirst, OutputIterator olast, RNG rng) {
                                                                                                                              ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDeme.h:29:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:46:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:42: warning: unused parameter 'org' [-Wunused-parameter]
        virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { }
                                                ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:70: warning: unused parameter 'cell' [-Wunused-parameter]
        virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { }
                                                                            ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:90: warning: unused parameter 'merit' [-Wunused-parameter]
        virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { }
                                                                                                ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:140:101: warning: unused parameter 'lineage' [-Wunused-parameter]
        virtual void MigrateOrganism(cOrganism* org, const cPopulationCell& cell, const cMerit& merit, int lineage) { }
                                                                                                           ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:146:54: warning: unused parameter 'cell' [-Wunused-parameter]
        virtual bool IsWorldBoundary(const cPopulationCell& cell) { return false; }
                                                            ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cWorld.h:149:48: warning: unused parameter 'ctx' [-Wunused-parameter]
        virtual void ProcessPostUpdate(cAvidaContext& ctx) { }
                                                      ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDeme.h:29:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPhenotype.h:661:32: warning: unused parameter 'i' [-Wunused-parameter]
  void IncSenseCount(const int i) { /*assert(initialized == true); cur_sense_count[i]++;*/ }  
                               ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDeme.h:31:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:24:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cStats.h:44:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataManager.h:32:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:59:45: warning: unused parameter 'target' [-Wunused-parameter]
  virtual cString GetDesc(const TargetType* target, const cFlexVar& idx) const { return m_desc; }
                                            ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:59:69: warning: unused parameter 'idx' [-Wunused-parameter]
  virtual cString GetDesc(const TargetType* target, const cFlexVar& idx) const { return m_desc; }
                                                                    ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:64:32: warning: unused parameter 'target' [-Wunused-parameter]
  virtual bool Set(TargetType* target, const cFlexVar&, const cStringList&, const cString&) const { return false; }
                               ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:170:58: warning: unused parameter 'idx' [-Wunused-parameter]
  cFlexVar Get(const TargetType* target, const cFlexVar& idx, const cStringList& args) const
                                                         ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:170:82: warning: unused parameter 'args' [-Wunused-parameter]
  cFlexVar Get(const TargetType* target, const cFlexVar& idx, const cStringList& args) const
                                                                                 ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/tDataEntry.h:196:82: warning: unused parameter 'args' [-Wunused-parameter]
  cFlexVar Get(const TargetType* target, const cFlexVar& idx, const cStringList& args) const
                                                                                 ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDeme.h:31:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:24:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cStats.h:731:25: warning: unused parameter 'res_comb_index' [-Wunused-parameter]
  void AddLastSense(int res_comb_index) { /*sense_last_count[res_comb_index]++;*/ }
                        ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cStats.h:732:33: warning: unused parameter 'res_comb_index' [-Wunused-parameter]
  void IncLastSenseExeCount(int res_comb_index, int count) { /*sense_last_exe_count[res_comb_index]+= count;*/ }
                                ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cStats.h:732:53: warning: unused parameter 'count' [-Wunused-parameter]
  void IncLastSenseExeCount(int res_comb_index, int count) { /*sense_last_exe_count[res_comb_index]+= count;*/ }
                                                    ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDeme.h:31:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:72:53: warning: unused parameter 's' [-Wunused-parameter]
        virtual void BroadcastToNeighbors(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { }
                                                           ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:72:69: warning: unused parameter 'msg' [-Wunused-parameter]
        virtual void BroadcastToNeighbors(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { }
                                                                           ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:72:96: warning: unused parameter 'pop_interface' [-Wunused-parameter]
        virtual void BroadcastToNeighbors(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { }
                                                                                                      ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:75:40: warning: unused parameter 's' [-Wunused-parameter]
        virtual void Unicast(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { }
                                              ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:75:56: warning: unused parameter 'msg' [-Wunused-parameter]
        virtual void Unicast(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { }
                                                              ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:75:83: warning: unused parameter 'pop_interface' [-Wunused-parameter]
        virtual void Unicast(cPopulationCell& s, cOrgMessage& msg, cPopulationInterface* pop_interface) { }
                                                                                         ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:78:39: warning: unused parameter 's' [-Wunused-parameter]
        virtual void Rotate(cPopulationCell& s, int x) { }
                                             ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:78:46: warning: unused parameter 'x' [-Wunused-parameter]
        virtual void Rotate(cPopulationCell& s, int x) { }
                                                    ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:81:39: warning: unused parameter 's' [-Wunused-parameter]
        virtual void Select(cPopulationCell& s, int x) { }
                                             ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDemeNetwork.h:81:46: warning: unused parameter 'x' [-Wunused-parameter]
        virtual void Select(cPopulationCell& s, int x) { }
                                                    ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:23:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.h:27:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cDeme.h:35:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cResourceCount.h:28:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cSpatialResCount.h:137:56: warning: unused parameter 'ctx' [-Wunused-parameter]
  virtual void SetProbabilisticResource(cAvidaContext& ctx, double, double, double, double, double, int, int, int) { ; }
                                                       ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:35:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/cConstBurstSchedule.h:26:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/cSchedule.h:51:32: warning: unused parameter 'id' [-Wunused-parameter]
  virtual double GetStatus(int id) { return 0.0; }
                               ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:43:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.h:232:44: warning: unused parameter 'in_hardware' [-Wunused-parameter]
  virtual void InheritState(cHardwareBase& in_hardware) { ; }
                                           ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareBase.h:236:40: warning: unused parameter 'jump_label' [-Wunused-parameter]
  virtual bool Jump_To_Alarm_Label(int jump_label) { return false; }
                                       ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:44:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareManager.h:25:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:164:61: warning: unused parameter 'deme_id' [-Wunused-parameter]
inline const tArray<double>& cTestCPU::GetDemeResources(int deme_id, cAvidaContext& ctx)    
                                                            ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:169:61: warning: unused parameter 'cell_id' [-Wunused-parameter]
inline const tArray<double>& cTestCPU::GetCellResources(int cell_id, cAvidaContext& ctx)   
                                                            ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cTestCPU.h:179:83: warning: unused parameter 'cell_id' [-Wunused-parameter]
inline const tArray<double>& cTestCPU::GetFrozenResources(cAvidaContext& ctx, int cell_id)   
                                                                                  ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:61:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/cTopology.h:103:72: warning: unused parameter 'x_size' [-Wunused-parameter]
void build_clique(InputIterator begin, InputIterator end, unsigned int x_size, unsigned int y_size) {
                                                                       ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/tools/cTopology.h:103:93: warning: unused parameter 'y_size' [-Wunused-parameter]
void build_clique(InputIterator begin, InputIterator end, unsigned int x_size, unsigned int y_size) {
                                                                                            ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:70:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:277:35: warning: unused parameter 'value' [-Wunused-parameter]
  const cCPUMemory& GetMemory(int value) const { return m_memory; }
                                  ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:278:29: warning: unused parameter 'value' [-Wunused-parameter]
  cCPUMemory& GetMemory(int value) { return m_memory; }
                            ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:279:22: warning: unused parameter 'value' [-Wunused-parameter]
  int GetMemSize(int value) const { return  m_memory.GetSize(); }
                     ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:291:39: warning: unused parameter 'in_label' [-Wunused-parameter]
  bool ThreadSelect(const cCodeLabel& in_label) { return false; } // Labeled threads not supported
                                      ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:303:37: warning: unused parameter 'bu' [-Wunused-parameter]
  bool ParasiteInfectHost(cBioUnit* bu) { return false; }
                                    ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:371:34: warning: unused parameter 'ctx' [-Wunused-parameter]
  bool Inst_Catch(cAvidaContext& ctx) { ReadLabel(); return true; };
                                 ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/cpu/cHardwareCPU.h:376:34: warning: unused parameter 'ctx' [-Wunused-parameter]
  bool Inst_Label(cAvidaContext& ctx) { ReadLabel(); return true; };
                                 ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:2916:20: error: no matching member function for call to 'push_back'
    track_founders.push_back(make_pair(organism->GetBioGroup("genotype")->GetID(), new_genome.AsString())); 
    ~~~~~~~~~~~~~~~^~~~~~~~~
/usr/include/c++/v1/vector:688:36: note: candidate function not viable: no known conversion from 'pair<[...], typename __make_pair_return<cString>::type>' to 'const pair<[...], std::__1::basic_string<char>>' for 1st argument
    _LIBCPP_INLINE_VISIBILITY void push_back(const_reference __x);
                                   ^
/usr/include/c++/v1/vector:691:36: note: candidate function not viable: no known conversion from 'pair<[...], typename __make_pair_return<cString>::type>' to 'pair<[...], std::__1::basic_string<char>>' for 1st argument
    _LIBCPP_INLINE_VISIBILITY void push_back(value_type&& __x);
                                   ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:4494:117: warning: unused parameter 'ctx' [-Wunused-parameter]
void cPopulation::PrintDemeSpatialResData(const cResourceCount& res, const int i, const int deme_id, cAvidaContext& ctx) const { 
                                                                                                                    ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:4613:50: warning: unused parameter 'organism' [-Wunused-parameter]
void cPopulation::CCladeSetupOrganism(cOrganism* organism)
                                                 ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:5474:51: warning: unused parameter 'ctx' [-Wunused-parameter]
void cPopulation::UpdateFTOrgStats(cAvidaContext& ctx) 
                                                  ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:5544:59: warning: unused parameter 'ctx' [-Wunused-parameter]
void cPopulation::UpdateMaleFemaleOrgStats(cAvidaContext& ctx)
                                                          ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:6680:102: warning: unused parameter 'ctx2' [-Wunused-parameter]
void cPopulation::InjectGenome(int cell_id, eBioUnitSource src, const Genome& genome, cAvidaContext& ctx2, int lineage_label, bool assign_group) 
                                                                                                     ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/avida-core/source/main/cPopulation.cc:7448:69: warning: unused parameter 'Verbosity' [-Wunused-parameter]
void cPopulation::UpdateGradientCount(cAvidaContext& ctx, const int Verbosity, cWorld* world, const cString res_name)
                                                                    ^
50 warnings and 1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/avida


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