[package - 103amd64-quarterly][math/adept] Failed for adept-2.0.3_1 in build

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Sat Feb 10 01:15:48 UTC 2018


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident:          $FreeBSD: branches/2018Q1/math/adept/Makefile 457311 2017-12-26 19:28:08Z yuri $
Log URL:        http://beefy2.nyi.freebsd.org/data/103amd64-quarterly/461356/logs/adept-2.0.3_1.log
Build URL:      http://beefy2.nyi.freebsd.org/build.html?mastername=103amd64-quarterly&build=461356
Log:

=>> Building math/adept
build started at Sat Feb 10 01:15:10 UTC 2018
port directory: /usr/ports/math/adept
package name: adept-2.0.3_1
building for: FreeBSD 103amd64-quarterly-job-12 10.3-RELEASE-p26 FreeBSD 10.3-RELEASE-p26 amd64
maintained by: yuri at FreeBSD.org
Makefile ident:      $FreeBSD: branches/2018Q1/math/adept/Makefile 457311 2017-12-26 19:28:08Z yuri $
Poudriere version: 3.2.4-49-g17610211
Host OSVERSION: 1200054
Jail OSVERSION: 1003000
Job Id: 12

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---Begin OPTIONS List---
===> The following configuration options are available for adept-2.0.3_1:
     PDFTEXDOCS=off: Build and install PDF documentation from LaTeX sources
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--disable-static --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/math/adept/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/adept/work  HOME=/wrkdirs/usr/ports/math/adept/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/adept/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
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--MAKE_ENV--
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 ="cpp" CPPFLAGS=""  LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc6  -L/usr/local/lib/gcc6 -B/usr/local/bin -L/usr/local/lib -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
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--PLIST_SUB--
PDFTEXDOCS="@comment " NO_PDFTEXDOCS="" OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/adept"  EXAMPLESDIR="share/examples/adept"  DATADIR="share/adept"  WWWDIR="www/adept"  ETCDIR="etc/adept"
--End PLIST_SUB--

--SUB_LIST--
PDFTEXDOCS="@comment " NO_PDFTEXDOCS="" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/adept DOCSDIR=/usr/local/share/doc/adept EXAMPLESDIR=/usr/local/share/examples/adept  WWWDIR=/usr/local/www/adept ETCDIR=/usr/local/etc/adept
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
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PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
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--Resource limits--
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data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
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=======================<phase: check-sanity   >============================
===>  License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   adept-2.0.3_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.3_1.txz
[103amd64-quarterly-job-12] Installing pkg-1.10.3_1...
[103amd64-quarterly-job-12] Extracting pkg-1.10.3_1: .......... done
===>   adept-2.0.3_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of adept-2.0.3_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by adept-2.0.3_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by adept-2.0.3_1 for building
=> SHA256 Checksum OK for adept-2.0.3.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by adept-2.0.3_1 for building
===>  Extracting for adept-2.0.3_1
=> SHA256 Checksum OK for adept-2.0.3.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for adept-2.0.3_1
===>  Applying FreeBSD patches for adept-2.0.3_1
===========================================================================
=======================<phase: build-depends  >============================
===>   adept-2.0.3_1 depends on executable: autoconf-2.69 - not found
===>   Installing existing package /packages/All/autoconf-2.69_1.txz
[103amd64-quarterly-job-12] Installing autoconf-2.69_1...
[103amd64-quarterly-job-12] `-- Installing autoconf-wrapper-20131203...
[103amd64-quarterly-job-12] `-- Extracting autoconf-wrapper-20131203: ........ done
[103amd64-quarterly-job-12] `-- Installing indexinfo-0.3.1...
[103amd64-quarterly-job-12] `-- Extracting indexinfo-0.3.1: .... done
[103amd64-quarterly-job-12] `-- Installing m4-1.4.18,1...
[103amd64-quarterly-job-12] `-- Extracting m4-1.4.18,1: .......... done
[103amd64-quarterly-job-12] `-- Installing perl5-5.24.3...
[103amd64-quarterly-job-12] `-- Extracting perl5-5.24.3: .......... done
[103amd64-quarterly-job-12] Extracting autoconf-2.69_1: .......... done
Message from perl5-5.24.3:

The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:

#!/usr/local/bin/perl

or

#!/usr/bin/env perl

The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
===>   adept-2.0.3_1 depends on executable: autoconf-2.69 - found
===>   Returning to build of adept-2.0.3_1
===>   adept-2.0.3_1 depends on executable: autoheader-2.69 - found
===>   adept-2.0.3_1 depends on executable: autoreconf-2.69 - found
===>   adept-2.0.3_1 depends on executable: aclocal-1.15 - not found
===>   Installing existing package /packages/All/automake-1.15.1.txz
[103amd64-quarterly-job-12] Installing automake-1.15.1...
[103amd64-quarterly-job-12] `-- Installing automake-wrapper-20131203...
[103amd64-quarterly-job-12] `-- Extracting automake-wrapper-20131203: ... done
[103amd64-quarterly-job-12] Extracting automake-1.15.1: .......... done
===>   adept-2.0.3_1 depends on executable: aclocal-1.15 - found
===>   Returning to build of adept-2.0.3_1
===>   adept-2.0.3_1 depends on executable: automake-1.15 - found
===>   adept-2.0.3_1 depends on executable: libtoolize - not found
<snip>
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking dependency style of cc... gcc3
checking the archiver (/usr/local/bin/ar) interface... ar
checking build system type... amd64-portbld-freebsd10.3
checking host system type... amd64-portbld-freebsd10.3
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
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checking for fgrep... (cached) /usr/bin/fgrep
checking for ld used by cc... /usr/local/bin/ld
checking if the linker (/usr/local/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm
checking the name lister (/usr/local/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking how to convert amd64-portbld-freebsd10.3 file names to amd64-portbld-freebsd10.3 format... func_convert_file_noop
checking how to convert amd64-portbld-freebsd10.3 file names to toolchain format... func_convert_file_noop
checking for /usr/local/bin/ld option to reload object files... -r
checking for objdump... /usr/local/bin/objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... /usr/local/bin/ranlib
checking command to parse /usr/local/bin/nm output from cc object... ok
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checking how to truncate binary pipes... /bin/dd bs=4096 count=1
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checking if mt is a manifest tool... no
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checking for ANSI C header files... (cached) yes
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checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... yes
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... freebsd10.3 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... c++ -E
checking for ld used by c++... /usr/local/bin/ld
checking if the linker (/usr/local/bin/ld) is GNU ld... yes
checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
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checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd10.3 ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran6 option to produce PIC... -fPIC
checking if gfortran6 PIC flag -fPIC works... yes
checking if gfortran6 static flag -static works... yes
checking if gfortran6 supports -c -o file.o... yes
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checking whether the gfortran6 linker (/usr/local/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd10.3 ld.so
checking how to hardcode library paths into programs... immediate
checking for sys/time.h... (cached) yes
checking for gettimeofday... (cached) yes
checking for pow... yes
checking for sqrt... yes
checking for c++ option to support OpenMP... unsupported
checking how to get verbose linking output from gfortran6... -v
checking for Fortran 77 libraries of gfortran6...  -L/usr/local/lib/gcc6 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc6/gcc/x86_64-portbld-freebsd10.3/6.4.0 -L/usr/local/lib/gcc6/gcc/x86_64-portbld-freebsd10.3/6.4.0/../../../../../x86_64-portbld-freebsd10.3/lib -L/usr/local/lib/gcc6/gcc/x86_64-portbld-freebsd10.3/6.4.0/../../.. -lgfortran -lm -lssp_nonshared -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking if sgemm_ is being linked in already... no
checking for sgemm_ in -lopenblas... yes
checking for cheev_... yes
checking whether cblas.h is from OpenBLAS... no
checking for gsl_multimin_fdfminimizer_alloc in -lgsl... no
checking adolc/adolc.h usability... no
checking adolc/adolc.h presence... no
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checking for tapestats in -ladolc... no
checking whether Sacado is installed... no
checking cppad/cppad.hpp usability... no
checking cppad/cppad.hpp presence... no
checking for cppad/cppad.hpp... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating makefile_include
config.status: creating adept/Makefile
config.status: creating include/Makefile
config.status: creating benchmark/Makefile
config.status: creating config.h
config.status: creating config_platform_independent.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: ********************* Summary **************************************
configure:   CXX = c++ 
configure:   CPPFLAGS = 
configure:   CXXFLAGS = -O2 -pipe -fstack-protector -fno-strict-aliasing  
configure:   LDFLAGS =   -Wl,-rpath=/usr/local/lib/gcc6  -L/usr/local/lib/gcc6 -B/usr/local/bin -L/usr/local/lib -fstack-protector
configure:   LIBS =  -lopenblas 
configure: Typing "make; make install" will install Adept header files in ${prefix}/include
configure: and the static and shared libraries as ${exec_prefix}/lib/libadept.*, where
configure: prefix=/usr/local
configure: ********************* Libraries used by Adept **********************
configure: BLAS (Basic Linear Algebra Subprograms) will be used: BLAS_LIBS = -lopenblas
configure: LAPACK (Linear Algebra Package) will be used: LAPACK_LIBS = 
configure: ********************* Libraries used by test programs **************
configure: GNU Scientific Library (GSL) not found; Adept will compile all the
configure: example programs except test/test_gsl_interface.
configure: ********************* Benchmark program ****************************
configure: The benchmarking program, "benchmark/advection_benchmark", will be
configure: compiled with support for these automatic differentiation libraries:
configure:    Adept: yes
configure:    ADOLC: no
configure:    CppAD: no
configure:    Sacado: no
configure: ********************* Top tips *************************************
configure: To use a higher than default optimization level, call this configure
configure: script with something like: ./configure "CXXFLAGS=-g -O3"
configure: If you have libraries in non-standard locations, specify their location
configure: by calling this script with something like:
configure:   ./configure CPPFLAGS=-I/local/include LDFLAGS="-L/local/lib -Wl,-rpath,/local/lib"
configure: The rpath argument is especially useful for locating the BLAS and LAPACK
configure: libraries if they are in non-standard locations, so that executables
configure: built with Adept do not need to use the LD_LIBRARY_PATH environment
configure: variable to specify their locations at run-time.
configure: ********************************************************************
===========================================================================
=======================<phase: build          >============================
===>  Building for adept-2.0.3_1
gmake[1]: Entering directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.3'
gmake  all-recursive
gmake[2]: Entering directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.3'
Making all in adept
gmake[3]: Entering directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.3/adept'
/bin/sh ../libtool  --tag=CXX   --mode=compile c++ -DHAVE_CONFIG_H -I. -I..  -I../include   -O2 -pipe -fstack-protector -fno-strict-aliasing  -MT libadept_la-Array.lo -MD -MP -MF .deps/libadept_la-Array.Tpo -c -o libadept_la-Array.lo `test -f 'Array.cpp' || echo './'`Array.cpp
libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I.. -I../include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT libadept_la-Array.lo -MD -MP -MF .deps/libadept_la-Array.Tpo -c Array.cpp  -fPIC -DPIC -o .libs/libadept_la-Array.o
In file included from Array.cpp:11:
In file included from ../include/adept/Array.h:29:
In file included from ../include/adept/Storage.h:26:
In file included from ../include/adept/Stack.h:41:
./include/adept/traits.h:77:32: warning: unknown warning group '-Wpragmas', ignored [-Wunknown-pragmas]
#pragma GCC diagnostic ignored "-Wpragmas"
                               ^
./include/adept/traits.h:78:32: warning: unknown warning group '-Wunused-local-typedefs', ignored [-Wunknown-pragmas]
#pragma GCC diagnostic ignored "-Wunused-local-typedefs"
                               ^
./include/adept/traits.h:79:32: warning: unknown warning group '-Wpragmas', ignored [-Wunknown-pragmas]
#pragma GCC diagnostic warning "-Wpragmas"
                               ^
In file included from Array.cpp:11:
In file included from ../include/adept/Array.h:29:
In file included from ../include/adept/Storage.h:27:
./include/adept/Packet.h:244:37: error: use of undeclared identifier '_mm_undefined_ps'
      __m128 shuftmp= _mm_movehl_ps(_mm_undefined_ps(),
                                    ^
./include/adept/Packet.h:250:37: error: use of undeclared identifier '_mm_undefined_ps'
      __m128 shuftmp= _mm_movehl_ps(_mm_undefined_ps(),
                                    ^
./include/adept/Packet.h:256:37: error: use of undeclared identifier '_mm_undefined_ps'
      __m128 shuftmp= _mm_movehl_ps(_mm_undefined_ps(),
                                    ^
./include/adept/Packet.h:262:37: error: use of undeclared identifier '_mm_undefined_ps'
      __m128 shuftmp= _mm_movehl_ps(_mm_undefined_ps(),
                                    ^
3 warnings and 4 errors generated.
gmake[3]: *** [Makefile:476: libadept_la-Array.lo] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.3/adept'
gmake[2]: *** [Makefile:428: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.3'
gmake[1]: *** [Makefile:350: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/adept/work/adept-2.0.3'
*** Error code 1

Stop.
make: stopped in /usr/ports/math/adept


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