[package - 111arm64-quarterly][science/PETSc] Failed for PETSc-3.8.3 in configure

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Fri Feb 9 16:36:31 UTC 2018


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident:          $FreeBSD: branches/2018Q1/science/PETSc/Makefile 456877 2017-12-21 00:26:58Z yuri $
Log URL:        http://thunderx1.nyi.freebsd.org/data/111arm64-quarterly/461031/logs/PETSc-3.8.3.log
Build URL:      http://thunderx1.nyi.freebsd.org/build.html?mastername=111arm64-quarterly&build=461031
Log:

=>> Building science/PETSc
build started at Fri Feb  9 16:35:19 UTC 2018
port directory: /usr/ports/science/PETSc
package name: PETSc-3.8.3
building for: FreeBSD 111arm64-quarterly-job-22 11.1-RELEASE FreeBSD 11.1-RELEASE arm64
maintained by: yuri at FreeBSD.org
Makefile ident:      $FreeBSD: branches/2018Q1/science/PETSc/Makefile 456877 2017-12-21 00:26:58Z yuri $
Poudriere version: 3.2.4-42-g98f2e28b
Host OSVERSION: 1200052
Jail OSVERSION: 1101001
Job Id: 22

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--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--with-shared-libraries=1  --with-mpi-dir=/usr/local  CFLAGS="-O2 -pipe  -fno-strict-aliasing -msse2" CXXFLAGS="-O2 -pipe -fno-strict-aliasing  -msse2" CPPFLAGS=""  LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc6  -L/usr/local/lib/gcc6 -B/usr/local/bin" LIBS="" --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

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  -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc6  -L/usr/local/lib/gcc6 -B/usr/local/bin" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
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--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/petsc DOCSDIR=/usr/local/share/doc/PETSc EXAMPLESDIR=/usr/local/share/examples/PETSc  WWWDIR=/usr/local/www/PETSc ETCDIR=/usr/local/etc/PETSc
--End SUB_LIST--

---Begin make.conf---
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=======================<phase: check-sanity   >============================
===>  License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   PETSc-3.8.3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.3_1.txz
[111arm64-quarterly-job-22] Installing pkg-1.10.3_1...
[111arm64-quarterly-job-22] Extracting pkg-1.10.3_1: .......... done
===>   PETSc-3.8.3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of PETSc-3.8.3
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by PETSc-3.8.3 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by PETSc-3.8.3 for building
=> SHA256 Checksum OK for petsc-3.8.3.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by PETSc-3.8.3 for building
===>  Extracting for PETSc-3.8.3
=> SHA256 Checksum OK for petsc-3.8.3.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for PETSc-3.8.3
===>  Applying FreeBSD patches for PETSc-3.8.3
===========================================================================
=======================<phase: build-depends  >============================
===>   PETSc-3.8.3 depends on executable: gfortran6 - not found
===>   Installing existing package /packages/All/gcc6-6.4.0_3.txz
[111arm64-quarterly-job-22] Installing gcc6-6.4.0_3...
[111arm64-quarterly-job-22] `-- Installing binutils-2.28,1...
[111arm64-quarterly-job-22] |   `-- Installing gettext-runtime-0.19.8.1_1...
[111arm64-quarterly-job-22] |   | `-- Installing indexinfo-0.3.1...
[111arm64-quarterly-job-22] |   | `-- Extracting indexinfo-0.3.1: .... done
[111arm64-quarterly-job-22] |   `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[111arm64-quarterly-job-22] `-- Extracting binutils-2.28,1: .......... done
[111arm64-quarterly-job-22] `-- Installing gmp-6.1.2...
[111arm64-quarterly-job-22] `-- Extracting gmp-6.1.2: .......... done
[111arm64-quarterly-job-22] `-- Installing mpc-1.0.3...
[111arm64-quarterly-job-22] |   `-- Installing mpfr-3.1.6...
[111arm64-quarterly-job-22] |   `-- Extracting mpfr-3.1.6: .......... done
[111arm64-quarterly-job-22] `-- Extracting mpc-1.0.3: ...... done
[111arm64-quarterly-job-22] Extracting gcc6-6.4.0_3: .......... done
Message from gcc6-6.4.0_3:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc6

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   PETSc-3.8.3 depends on executable: gfortran6 - found
===>   Returning to build of PETSc-3.8.3
===>   PETSc-3.8.3 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_1.txz
[111arm64-quarterly-job-22] Installing gmake-4.2.1_1...
[111arm64-quarterly-job-22] Extracting gmake-4.2.1_1: .......... done
===>   PETSc-3.8.3 depends on executable: gmake - found
===>   Returning to build of PETSc-3.8.3
===>   PETSc-3.8.3 depends on file: /usr/local/bin/python2.7 - not found
===>   Installing existing package /packages/All/python27-2.7.14_1.txz
[111arm64-quarterly-job-22] Installing python27-2.7.14_1...
[111arm64-quarterly-job-22] `-- Installing libffi-3.2.1_2...
[111arm64-quarterly-job-22] `-- Extracting libffi-3.2.1_2: .......... done
[111arm64-quarterly-job-22] `-- Installing readline-7.0.3_1...
[111arm64-quarterly-job-22] `-- Extracting readline-7.0.3_1: .......... done
[111arm64-quarterly-job-22] Extracting python27-2.7.14_1: .......... done
Message from python27-2.7.14_1:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
===>   PETSc-3.8.3 depends on file: /usr/local/bin/python2.7 - found
===>   Returning to build of PETSc-3.8.3
===>   PETSc-3.8.3 depends on file: /usr/local/bin/as - found
===>   PETSc-3.8.3 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found
===>   Installing existing package /packages/All/libX11-1.6.5,1.txz
[111arm64-quarterly-job-22] Installing libX11-1.6.5,1...
[111arm64-quarterly-job-22] `-- Installing kbproto-1.0.7...
[111arm64-quarterly-job-22] `-- Extracting kbproto-1.0.7: .......... done
[111arm64-quarterly-job-22] `-- Installing libXau-1.0.8_3...
[111arm64-quarterly-job-22] |   `-- Installing xproto-7.0.31...
[111arm64-quarterly-job-22] |   `-- Extracting xproto-7.0.31: .......... done
[111arm64-quarterly-job-22] `-- Extracting libXau-1.0.8_3: .......... done
[111arm64-quarterly-job-22] `-- Installing libXdmcp-1.1.2...
[111arm64-quarterly-job-22] `-- Extracting libXdmcp-1.1.2: ......... done
[111arm64-quarterly-job-22] `-- Installing libxcb-1.12_2...
[111arm64-quarterly-job-22] |   `-- Installing libpthread-stubs-0.4...
[111arm64-quarterly-job-22] |   `-- Extracting libpthread-stubs-0.4: . done
[111arm64-quarterly-job-22] |   `-- Installing libxml2-2.9.7...
[111arm64-quarterly-job-22] |   `-- Extracting libxml2-2.9.7: .......... done
[111arm64-quarterly-job-22] `-- Extracting libxcb-1.12_2: .......... done
[111arm64-quarterly-job-22] Extracting libX11-1.6.5,1: .......... done
===>   PETSc-3.8.3 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===>   Returning to build of PETSc-3.8.3
===========================================================================
=======================<phase: lib-depends    >============================
===>   PETSc-3.8.3 depends on shared library: libmpich.so - not found
===>   Installing existing package /packages/All/mpich2-1.5_8,5.txz
[111arm64-quarterly-job-22] Installing mpich2-1.5_8,5...
[111arm64-quarterly-job-22] `-- Installing bash-4.4.12_3...
[111arm64-quarterly-job-22] `-- Extracting bash-4.4.12_3: .......... done
[111arm64-quarterly-job-22] `-- Installing libXt-1.1.5,1...
[111arm64-quarterly-job-22] |   `-- Installing libSM-1.2.2_3,1...
[111arm64-quarterly-job-22] |   | `-- Installing libICE-1.0.9_1,1...
[111arm64-quarterly-job-22] |   | `-- Extracting libICE-1.0.9_1,1: .......... done
[111arm64-quarterly-job-22] |   `-- Extracting libSM-1.2.2_3,1: .......... done
[111arm64-quarterly-job-22] `-- Extracting libXt-1.1.5,1: .......... done
[111arm64-quarterly-job-22] Extracting mpich2-1.5_8,5: .......... done
Message from mpich2-1.5_8,5:

=======================================================================

MPICH-2 has been installed under /usr/local.

                               /!\ IMPORTANT /!\

Please change the password in /usr/local/etc/mpd.conf

=======================================================================
===>   PETSc-3.8.3 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so)
===>   Returning to build of PETSc-3.8.3
===>   PETSc-3.8.3 depends on shared library: libblas.so - not found
===>   Installing existing package /packages/All/blas-3.5.0_3.txz
[111arm64-quarterly-job-22] Installing blas-3.5.0_3...
[111arm64-quarterly-job-22] Extracting blas-3.5.0_3: ....... done
===>   PETSc-3.8.3 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so)
===>   Returning to build of PETSc-3.8.3
===>   PETSc-3.8.3 depends on shared library: liblapack.so - not found
===>   Installing existing package /packages/All/lapack-3.5.0_3.txz
[111arm64-quarterly-job-22] Installing lapack-3.5.0_3...
[111arm64-quarterly-job-22] Extracting lapack-3.5.0_3: .......... done
===>   PETSc-3.8.3 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so)
===>   Returning to build of PETSc-3.8.3
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for PETSc-3.8.3
===============================================================================
             Configuring PETSc to compile on your system                       
===============================================================================
TESTING: configureExternalPackagesDir from config.framework(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/framework.py:841)
TESTING: configureDebuggers from config.utilities.debuggers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/utilities/debuggers.py:22)
TESTING: configureGit from config.sourceControl(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/sourceControl.py:24)
TESTING: configureMercurial from config.sourceControl(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/sourceControl.py:35)
TESTING: configureCLanguage from PETSc.options.languages(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/languages.py:27)
TESTING: configureDirectories from PETSc.options.petscdir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/petscdir.py:23)
TESTING: getDatafilespath from PETSc.options.dataFilesPath(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/dataFilesPath.py:29)
TESTING: configureInstallationMethod from PETSc.options.petscclone(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/petscclone.py:20)
TESTING: configureArchitecture from PETSc.options.arch(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/arch.py:36)
TESTING: setInstallDir from PETSc.options.installDir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/installDir.py:35)
TESTING: saveReconfigure from PETSc.options.installDir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/installDir.py:75)
TESTING: cleanInstallDir from PETSc.options.installDir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/installDir.py:68)
TESTING: configureInstallDir from PETSc.options.installDir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/installDir.py:52)
TESTING: restoreReconfigure from PETSc.options.installDir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/installDir.py:88)
TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/externalpackagesdir.py:15)
TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/PETSc/options/externalpackagesdir.py:22)
TESTING: printEnvVariables from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:1612)
TESTING: resetEnvCompilers from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:1619)
                ===============================================================================
                    ***** WARNING: CC (set to cc) found in environment variables - ignoring 
                     use ./configure CC=$CC if you really want to use that value ******
                ===============================================================================
              
                ===============================================================================
                    ***** WARNING: CXX (set to c++) found in environment variables - ignoring 
                     use ./configure CXX=$CXX if you really want to use that value ******
                ===============================================================================
              
                ===============================================================================
                    ***** WARNING: FC (set to gfortran6) found in environment variables - ignoring 
                     use ./configure FC=$FC if you really want to use that value ******
                ===============================================================================
              
                ===============================================================================
                    ***** WARNING: F77 (set to gfortran6) found in environment variables - ignoring 
                     use ./configure F77=$F77 if you really want to use that value ******
                ===============================================================================
              
                ===============================================================================
                    ***** WARNING: FCFLAGS (set to -Wl,-rpath=/usr/local/lib/gcc6) found in environment variables - ignoring 
                     use ./configure FCFLAGS=$FCFLAGS if you really want to use that value ******
                ===============================================================================
              
                ===============================================================================
                    ***** WARNING: FFLAGS (set to -O -Wl,-rpath=/usr/local/lib/gcc6) found in environment variables - ignoring 
                     use ./configure FFLAGS=$FFLAGS if you really want to use that value ******
                ===============================================================================
              
                ===============================================================================
                    ***** WARNING: CPP (set to cpp) found in environment variables - ignoring 
                     use ./configure CPP=$CPP if you really want to use that value ******
                ===============================================================================
              
                ===============================================================================
                    ***** WARNING: MAKEFLAGS (set to  .MAKE.LEVEL.ENV=MAKELEVEL ARCH=aarch64 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.1 OSVERSION=1101001 PYTHONBASE=/usr/local _OSRELEASE=11.1-RELEASE) found in environment variables - ignoring 
                     use ./configure MAKEFLAGS=$MAKEFLAGS if you really want to use that value ******
                ===============================================================================
              
                ===============================================================================
                    ***** WARNING: AR (set to /usr/local/bin/ar) found in environment variables - ignoring 
                     use ./configure AR=$AR if you really want to use that value ******
                ===============================================================================
              
TESTING: checkEnvCompilers from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:1649)
TESTING: checkMPICompilerOverride from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:1584)
TESTING: requireMpiLdPath from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:1603)
TESTING: checkVendor from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:426)
TESTING: checkInitialFlags from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:436)
TESTING: checkCCompiler from config.setCompilers(/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:566)
*******************************************************************************
         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
-------------------------------------------------------------------------------
MPI compiler wrappers in /usr/local/bin do not work. See http://www.mcs.anl.gov/petsc/documentation/faq.html#mpi-compilers
*******************************************************************************

===>  Script "configure" failed unexpectedly.
Please report the problem to yuri at FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/science/PETSc/work/petsc-3.8.3/config.log" including the
output of the failure of your make command. Also, it might be a good idea to
provide an overview of all packages installed on your system (e.g. a
/usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1

Stop.
make: stopped in /usr/ports/science/PETSc


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