[package - head-amd64-default][biology/avida] Failed for avida-2.12.4 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Fri Feb 9 08:27:05 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports at FreeBSD.org
Last committer: linimon at FreeBSD.org
Ident: $FreeBSD: head/biology/avida/Makefile 456901 2017-12-21 10:23:19Z linimon $
Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p461193_s329007/logs/avida-2.12.4.log
Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p461193_s329007
Log:
=>> Building biology/avida
build started at Fri Feb 9 08:26:30 UTC 2018
port directory: /usr/ports/biology/avida
package name: avida-2.12.4
building for: FreeBSD head-amd64-default-job-10 12.0-CURRENT FreeBSD 12.0-CURRENT 1200056 amd64
maintained by: ports at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/avida/Makefile 456901 2017-12-21 10:23:19Z linimon $
Poudriere version: 3.2.4-48-gf881e389
Host OSVERSION: 1200054
Jail OSVERSION: 1200056
Job Id: 10
!!! Jail is newer than host. (Jail: 1200056, Host: 1200054) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1200056
UNAME_v=FreeBSD 12.0-CURRENT 1200056
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool
MASTERNAME=head-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.2.4-48-gf881e389
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for avida-2.12.4:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
ports at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/avida/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/avida/work HOME=/wrkdirs/usr/ports/biology/avida/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/avida/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/avida/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/avida/work HOME=/wrkdirs/usr/ports/biology/avida/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/avida/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/avida/work/stage PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" CMAKE_BUILD_TYPE="release" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/avida" EXAMPLESDIR="share/examples/avida" DATADIR="share/avida" WWWDIR="www/avida" ETCDIR="etc/avida"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/avida DOCSDIR=/usr/local/share/doc/avida EXAMPLESDIR=/usr/local/share/examples/avida WWWDIR=/usr/local/www/avida ETCDIR=/usr/local/etc/avida
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=amd64
CONFIGURE_MAX_CMD_LEN=262144
HAVE_COMPAT_IA32_KERN=YES
OPSYS=FreeBSD
OSREL=12.0
OSVERSION=1200056
PYTHONBASE=/usr/local
UID=0
_OSRELEASE=12.0-CURRENT
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> NOTICE:
The avida port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> avida-2.12.4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.4.txz
[head-amd64-default-job-10] Installing pkg-1.10.4...
[head-amd64-default-job-10] Extracting pkg-1.10.4: .......... done
===> avida-2.12.4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of avida-2.12.4
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
The avida port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by avida-2.12.4 for building
===========================================================================
=======================<phase: checksum >============================
===> NOTICE:
The avida port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by avida-2.12.4 for building
=> SHA256 Checksum OK for avida-2.12.4-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> NOTICE:
The avida port currently does not have a maintainer. As a result, it is
<snip>
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test HAVE_FUSED_MADD
-- Performing Test HAVE_FUSED_MADD - Failed
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_RELEASE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/biology/avida/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for avida-2.12.4
[1/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/apto/src/CMakeFiles/aptostatic.dir/core/FileSystem.cc.o -MF libs/apto/src/CMakeFiles/aptostatic.dir/core/FileSystem.cc.o.d -o libs/apto/src/CMakeFiles/aptostatic.dir/core/FileSystem.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc
[2/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/apto/src/CMakeFiles/aptostatic.dir/core/RefCount.cc.o -MF libs/apto/src/CMakeFiles/aptostatic.dir/core/RefCount.cc.o.d -o libs/apto/src/CMakeFiles/aptostatic.dir/core/RefCount.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/RefCount.cc
[3/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/apto/src/CMakeFiles/aptostatic.dir/core/Thread.cc.o -MF libs/apto/src/CMakeFiles/aptostatic.dir/core/Thread.cc.o.d -o libs/apto/src/CMakeFiles/aptostatic.dir/core/Thread.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/Thread.cc
[4/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/apto/src/CMakeFiles/aptostatic.dir/platform/Platform.cc.o -MF libs/apto/src/CMakeFiles/aptostatic.dir/platform/Platform.cc.o.d -o libs/apto/src/CMakeFiles/aptostatic.dir/platform/Platform.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/platform/Platform.cc
[5/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/apto/src/CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o -MF libs/apto/src/CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o.d -o libs/apto/src/CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/ContingencyTable.cc
[6/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/apto/src/CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o -MF libs/apto/src/CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o.d -o libs/apto/src/CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:1052:21: warning: unsequenced modification and access to 'idx_inc' [-Wunsequenced]
while (row_diff[++idx_inc] == row_marginals[idx_inc]) ;
^ ~~~~~~~
1 warning generated.
[7/183] : && /usr/local/bin/cmake -E remove lib/libapto.a && /usr/bin/ar qc lib/libapto.a libs/apto/src/CMakeFiles/aptostatic.dir/core/FileSystem.cc.o libs/apto/src/CMakeFiles/aptostatic.dir/core/RefCount.cc.o libs/apto/src/CMakeFiles/aptostatic.dir/core/Thread.cc.o libs/apto/src/CMakeFiles/aptostatic.dir/platform/Platform.cc.o libs/apto/src/CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o libs/apto/src/CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o && /usr/bin/ranlib lib/libapto.a && :
[8/183] /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -MD -MT libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o -MF libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o.d -o libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc
[9/183] /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -MD -MT libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o -MF libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o.d -o libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/RefCount.cc
[10/183] /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -MD -MT libs/apto/src/CMakeFiles/aptoshared.dir/core/Thread.cc.o -MF libs/apto/src/CMakeFiles/aptoshared.dir/core/Thread.cc.o.d -o libs/apto/src/CMakeFiles/aptoshared.dir/core/Thread.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/Thread.cc
[11/183] /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -MD -MT libs/apto/src/CMakeFiles/aptoshared.dir/platform/Platform.cc.o -MF libs/apto/src/CMakeFiles/aptoshared.dir/platform/Platform.cc.o.d -o libs/apto/src/CMakeFiles/aptoshared.dir/platform/Platform.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/platform/Platform.cc
[12/183] /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -MD -MT libs/apto/src/CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o -MF libs/apto/src/CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o.d -o libs/apto/src/CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/ContingencyTable.cc
[13/183] /usr/bin/c++ -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -MD -MT libs/apto/src/CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -MF libs/apto/src/CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o.d -o libs/apto/src/CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:1052:21: warning: unsequenced modification and access to 'idx_inc' [-Wunsequenced]
while (row_diff[++idx_inc] == row_marginals[idx_inc]) ;
^ ~~~~~~~
1 warning generated.
[14/183] : && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fstack-protector -shared -Wl,-soname,libapto.so -o lib/libapto.so libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o libs/apto/src/CMakeFiles/aptoshared.dir/core/Thread.cc.o libs/apto/src/CMakeFiles/aptoshared.dir/platform/Platform.cc.o libs/apto/src/CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o libs/apto/src/CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -pthread -pthread && :
[15/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o -MF libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o.d -o libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.cc
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.cc:57:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/basictypes.h:105:51: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
const int64 kint64min = ( ((( int64) kint32min) << 32) | 0 );
~~~~~~~~~~~~~~~~~~~~ ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.cc:141:33: warning: unused parameter 'name' [-Wunused-parameter]
GoogleInitializer(const char* name, void_function f) {
^
2 warnings generated.
[16/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o -MF libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o.d -o libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/central_freelist.cc
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/central_freelist.cc:55:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/central_freelist.h:59:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/spinlock.h:68:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/basictypes.h:105:51: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
const int64 kint64min = ( ((( int64) kint32min) << 32) | 0 );
~~~~~~~~~~~~~~~~~~~~ ^
1 warning generated.
[17/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/common.cc.o -MF libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/common.cc.o.d -o libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/common.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/common.cc
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/common.cc:57:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/common.h:65:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/commandlineflags.h:76:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/basictypes.h:105:51: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
const int64 kint64min = ( ((( int64) kint32min) << 32) | 0 );
~~~~~~~~~~~~~~~~~~~~ ^
1 warning generated.
[18/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/internal_logging.cc.o -MF libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/internal_logging.cc.o.d -o libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/internal_logging.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/internal_logging.cc
[19/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/malloc_extension.cc.o -MF libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/malloc_extension.cc.o.d -o libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/malloc_extension.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:69:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.h:69:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/basictypes.h:105:51: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
const int64 kint64min = ( ((( int64) kint32min) << 32) | 0 );
~~~~~~~~~~~~~~~~~~~~ ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:106:45: warning: unused parameter 'p' [-Wunused-parameter]
bool MallocExtension::VerifyNewMemory(void* p) { return true; }
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:107:50: warning: unused parameter 'p' [-Wunused-parameter]
bool MallocExtension::VerifyArrayNewMemory(void* p) { return true; }
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:108:48: warning: unused parameter 'p' [-Wunused-parameter]
bool MallocExtension::VerifyMallocMemory(void* p) { return true; }
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:110:54: warning: unused parameter 'property' [-Wunused-parameter]
bool MallocExtension::GetNumericProperty(const char* property, size_t* value) {
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:110:72: warning: unused parameter 'value' [-Wunused-parameter]
bool MallocExtension::GetNumericProperty(const char* property, size_t* value) {
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:114:54: warning: unused parameter 'property' [-Wunused-parameter]
bool MallocExtension::SetNumericProperty(const char* property, size_t value) {
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:114:71: warning: unused parameter 'value' [-Wunused-parameter]
bool MallocExtension::SetNumericProperty(const char* property, size_t value) {
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:118:50: warning: unused parameter 'length' [-Wunused-parameter]
void MallocExtension::GetStats(char* buffer, int length) {
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:124:44: warning: unused parameter 'histogram' [-Wunused-parameter]
int histogram[kMallocHistogramSize]) {
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:143:51: warning: unused parameter 'rate' [-Wunused-parameter]
void MallocExtension::SetMemoryReleaseRate(double rate) {
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/malloc_extension.cc:155:48: warning: unused parameter 'p' [-Wunused-parameter]
size_t MallocExtension::GetAllocatedSize(void* p) {
^
12 warnings generated.
[20/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/page_heap.cc.o -MF libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/page_heap.cc.o.d -o libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/page_heap.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/page_heap.cc
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/page_heap.cc:55:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/page_heap.h:58:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/common.h:65:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/commandlineflags.h:76:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/basictypes.h:105:51: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
const int64 kint64min = ( ((( int64) kint32min) << 32) | 0 );
~~~~~~~~~~~~~~~~~~~~ ^
1 warning generated.
[21/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/span.cc.o -MF libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/span.cc.o.d -o libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/span.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/span.cc
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/span.cc:55:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/span.h:60:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/common.h:65:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/commandlineflags.h:76:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/basictypes.h:105:51: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
const int64 kint64min = ( ((( int64) kint32min) << 32) | 0 );
~~~~~~~~~~~~~~~~~~~~ ^
1 warning generated.
[22/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/spinlock.cc.o -MF libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/spinlock.cc.o.d -o libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/spinlock.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/spinlock.cc
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/spinlock.cc:66:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/spinlock.h:68:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/basictypes.h:105:51: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
const int64 kint64min = ( ((( int64) kint32min) << 32) | 0 );
~~~~~~~~~~~~~~~~~~~~ ^
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/spinlock.cc:94:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/spinlock_posix-inl.h:72:45: warning: unused parameter 'w' [-Wunused-parameter]
static void SpinLockWake(volatile Atomic32 *w) {
^
2 warnings generated.
[23/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/static_vars.cc.o -MF libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/static_vars.cc.o.d -o libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/static_vars.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/static_vars.cc
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/static_vars.cc:54:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/static_vars.h:60:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/spinlock.h:68:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/basictypes.h:105:51: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
const int64 kint64min = ( ((( int64) kint32min) << 32) | 0 );
~~~~~~~~~~~~~~~~~~~~ ^
1 warning generated.
[24/183] /usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/sysinfo.cc.o -MF libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/sysinfo.cc.o.d -o libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/sysinfo.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc
FAILED: libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/sysinfo.cc.o
/usr/bin/c++ -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -fstack-protector -fno-strict-aliasing -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -MD -MT libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/sysinfo.cc.o -MF libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/sysinfo.cc.o.d -o libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/sysinfo.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc:80:
In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.h:69:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/basictypes.h:105:51: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
const int64 kint64min = ( ((( int64) kint32min) << 32) | 0 );
~~~~~~~~~~~~~~~~~~~~ ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc:667:29: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal]
if (sscanf(stext_, "0x%"SCNx64" 0x%"SCNx64" %*d %*d %*p %3s %*d %*d 0x%*x %*s %*s %*s %n",
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc:667:41: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal]
if (sscanf(stext_, "0x%"SCNx64" 0x%"SCNx64" %*d %*d %*p %3s %*d %*d 0x%*x %*s %*s %*s %n",
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc:704:40: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal]
sscanf(backing_ptr+1, "F %"SCNx64" %"SCNd64") (A %"SCNx64" %"SCNd64")",
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc:704:50: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal]
sscanf(backing_ptr+1, "F %"SCNx64" %"SCNd64") (A %"SCNx64" %"SCNd64")",
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc:704:64: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal]
sscanf(backing_ptr+1, "F %"SCNx64" %"SCNd64") (A %"SCNx64" %"SCNd64")",
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc:704:74: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal]
sscanf(backing_ptr+1, "F %"SCNx64" %"SCNd64") (A %"SCNx64" %"SCNd64")",
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc:832:32: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal]
"%08"PRIx64"-%08"PRIx64" %c%c%c%c %08"PRIx64" %02x:%02x %-11"PRId64" %s\n",
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc:832:44: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal]
"%08"PRIx64"-%08"PRIx64" %c%c%c%c %08"PRIx64" %02x:%02x %-11"PRId64" %s\n",
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc:832:65: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal]
"%08"PRIx64"-%08"PRIx64" %c%c%c%c %08"PRIx64" %02x:%02x %-11"PRId64" %s\n",
^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/sysinfo.cc:832:88: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal]
"%08"PRIx64"-%08"PRIx64" %c%c%c%c %08"PRIx64" %02x:%02x %-11"PRId64" %s\n",
^
1 warning and 10 errors generated.
ninja: build stopped: subcommand failed.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/avida
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