[package - 111armv6-quarterly][biology/fasttree] Failed for FastTree-2.1.10 in build

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Thu Feb 8 02:38:13 UTC 2018


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb at FreeBSD.org
Last committer: jwb at FreeBSD.org
Ident:          $FreeBSD: branches/2018Q1/biology/fasttree/Makefile 455562 2017-12-05 03:03:38Z jwb $
Log URL:        http://beefy15.nyi.freebsd.org/data/111armv6-quarterly/461194/logs/FastTree-2.1.10.log
Build URL:      http://beefy15.nyi.freebsd.org/build.html?mastername=111armv6-quarterly&build=461194
Log:

=>> Building biology/fasttree
build started at Thu Feb  8 02:37:53 UTC 2018
port directory: /usr/ports/biology/fasttree
package name: FastTree-2.1.10
building for: FreeBSD 111armv6-quarterly-job-01 11.1-RELEASE-p6 FreeBSD 11.1-RELEASE-p6 1101001 arm
maintained by: jwb at FreeBSD.org
Makefile ident:      $FreeBSD: branches/2018Q1/biology/fasttree/Makefile 455562 2017-12-05 03:03:38Z jwb $
Poudriere version: 3.2.4-48-gf881e389
Host OSVERSION: 1200054
Jail OSVERSION: 1101001
Job Id: 01

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jwb at FreeBSD.org
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XDG_DATA_HOME=/wrkdirs/usr/ports/biology/fasttree/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/fasttree/work  HOME=/wrkdirs/usr/ports/biology/fasttree/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/fasttree/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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=======================<phase: check-sanity   >============================
===>  License GPLv2+ accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   FastTree-2.1.10 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.3_1.txz
[111armv6-quarterly-job-01] Installing pkg-1.10.3_1...
[111armv6-quarterly-job-01] Extracting pkg-1.10.3_1: .......... done
===>   FastTree-2.1.10 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of FastTree-2.1.10
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2+ accepted by the user
===> Fetching all distfiles required by FastTree-2.1.10 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2+ accepted by the user
===> Fetching all distfiles required by FastTree-2.1.10 for building
=> SHA256 Checksum OK for FastTree-2.1.10.c.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2+ accepted by the user
===> Fetching all distfiles required by FastTree-2.1.10 for building
===>  Extracting for FastTree-2.1.10
=> SHA256 Checksum OK for FastTree-2.1.10.c.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for FastTree-2.1.10
===>  Applying FreeBSD patches for FastTree-2.1.10
===========================================================================
=======================<phase: build-depends  >============================
===>   FastTree-2.1.10 depends on executable: gcc6 - not found
===>   Installing existing package /packages/All/gcc6-6.4.0_3.txz
[111armv6-quarterly-job-01] Installing gcc6-6.4.0_3...
[111armv6-quarterly-job-01] `-- Installing binutils-2.28,1...
[111armv6-quarterly-job-01] |   `-- Installing gettext-runtime-0.19.8.1_1...
[111armv6-quarterly-job-01] |   | `-- Installing indexinfo-0.3.1...
[111armv6-quarterly-job-01] |   | `-- Extracting indexinfo-0.3.1: .... done
[111armv6-quarterly-job-01] |   `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[111armv6-quarterly-job-01] `-- Extracting binutils-2.28,1: .......... done
[111armv6-quarterly-job-01] `-- Installing gmp-6.1.2...
[111armv6-quarterly-job-01] `-- Extracting gmp-6.1.2: .......... done
[111armv6-quarterly-job-01] `-- Installing mpc-1.0.3...
[111armv6-quarterly-job-01] |   `-- Installing mpfr-3.1.6...
[111armv6-quarterly-job-01] |   `-- Extracting mpfr-3.1.6: .......... done
[111armv6-quarterly-job-01] `-- Extracting mpc-1.0.3: ...... done
[111armv6-quarterly-job-01] Extracting gcc6-6.4.0_3: .......... done
Message from gcc6-6.4.0_3:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc6

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   FastTree-2.1.10 depends on executable: gcc6 - found
===>   Returning to build of FastTree-2.1.10
===>   FastTree-2.1.10 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for FastTree-2.1.10
===========================================================================
=======================<phase: build          >============================
===>  Building for FastTree-2.1.10
/nxb-bin/usr/bin/cc -O2 -pipe  -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -DOPENMP -fopenmp -finline-functions -funroll-loops FastTree*.c -o FastTree -lm
FastTree-2.1.10.c:305:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 error generated.
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/fasttree/work/FastTree-2.1.10
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/fasttree


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