[package - 111mips64-quarterly][biology/migrate] Failed for migrate-3.6.11 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Feb 8 01:54:43 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports at FreeBSD.org
Last committer: amdmi3 at FreeBSD.org
Ident: $FreeBSD: branches/2018Q1/biology/migrate/Makefile 413499 2016-04-17 10:15:59Z amdmi3 $
Log URL: http://beefy16.nyi.freebsd.org/data/111mips64-quarterly/461194/logs/migrate-3.6.11.log
Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=111mips64-quarterly&build=461194
Log:
=>> Building biology/migrate
build started at Thu Feb 8 01:54:19 UTC 2018
port directory: /usr/ports/biology/migrate
package name: migrate-3.6.11
building for: FreeBSD 111mips64-quarterly-job-07 11.1-RELEASE-p6 FreeBSD 11.1-RELEASE-p6 1101001 mips
maintained by: ports at FreeBSD.org
Makefile ident: $FreeBSD: branches/2018Q1/biology/migrate/Makefile 413499 2016-04-17 10:15:59Z amdmi3 $
Poudriere version: 3.2.4-48-gf881e389
Host OSVERSION: 1200054
Jail OSVERSION: 1101001
Job Id: 07
---Begin Environment---
POUDRIEREPATH=/usr/local/bin/poudriere
PACKAGE_BUILDING=yes
LOCALBASE=/usr/local
LIBEXECPREFIX=/usr/local/libexec/poudriere
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIERE_VERSION=3.2.4-48-gf881e389
HOME=/root
USER=root
SCRIPTPREFIX=/usr/local/share/poudriere
MASTERNAME=111mips64-quarterly
PWD=/usr/local/poudriere/data/.m/111mips64-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
OLDPWD=/usr/local/poudriere/data/.m/111mips64-quarterly/ref/.p
POUDRIERE_BUILD_TYPE=bulk
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/111mips64-quarterly/ref
SAVED_TERM=
STATUS=1
MAIL=/var/mail/root
BLOCKSIZE=K
UNAME_r=11.1-RELEASE-p6
UNAME_v=FreeBSD 11.1-RELEASE-p6 1101001
OSVERSION=1101001
ABI_FILE=/usr/lib/crt1.o
UNAME_m=mips
UNAME_p=mips64
SHELL=/bin/csh
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for migrate-3.6.11:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
THREAD=off: Build with THREAD support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
ports at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
ac_cv_prog_GMAKE="/nxb-bin/usr/bin/make" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/migrate/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/migrate/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/migrate" EXAMPLESDIR="share/examples/migrate" DATADIR="share/migrate" WWWDIR="www/migrate" ETCDIR="etc/migrate"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/migrate DOCSDIR=/usr/local/share/doc/migrate EXAMPLESDIR=/usr/local/share/examples/migrate WWWDIR=/usr/local/www/migrate ETCDIR=/usr/local/etc/migrate
--End SUB_LIST--
---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=mips
MACHINE_ARCH=mips64
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=mips64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.1
OSVERSION=1101001
PYTHONBASE=/usr/local
UID=0
_OSRELEASE=11.1-RELEASE-p6
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 131072
stack size (kbytes, -s) 8192
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> NOTICE:
The migrate port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===========================================================================
=======================<phase: pkg-depends >============================
===> migrate-3.6.11 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.3_1.txz
[111mips64-quarterly-job-07] Installing pkg-1.10.3_1...
[111mips64-quarterly-job-07] Extracting pkg-1.10.3_1: .......... done
===> migrate-3.6.11 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of migrate-3.6.11
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
The migrate port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> Fetching all distfiles required by migrate-3.6.11 for building
===========================================================================
=======================<phase: checksum >============================
===> NOTICE:
The migrate port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> Fetching all distfiles required by migrate-3.6.11 for building
=> SHA256 Checksum OK for migrate-3.6.11.src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> NOTICE:
The migrate port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> Fetching all distfiles required by migrate-3.6.11 for building
===> Extracting for migrate-3.6.11
=> SHA256 Checksum OK for migrate-3.6.11.src.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for migrate-3.6.11
===> Applying FreeBSD patches for migrate-3.6.11
===========================================================================
=======================<phase: build-depends >============================
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for migrate-3.6.11
configure: loading site script /usr/ports/Templates/config.site
checking build system type... mips64-portbld-freebsd11.1
checking host system type... mips64-portbld-freebsd11.1
checking target system type... mips64-portbld-freebsd11.1
./configure: USERFLAGS+=-O2: not found
checking for gmake... (cached) /nxb-bin/usr/bin/make
=======================================================================
Migrate subversion:
Hardware: portbld
System OS: freebsd11.1 FreeBSD
System CPU: mips64
-----------------------------------------------------------------------
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /nxb-bin/usr/bin/cc accepts -g... yes
checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether /nxb-bin/usr/bin/c++ accepts -g... yes
./configure: CFLAGS+=: not found
C-compiler: /nxb-bin/usr/bin/cc
C++-compiler:/nxb-bin/usr/bin/c++
CFLAGS: -O2 -pipe -G0 -fno-strict-aliasing
=======================================================================
checking for a BSD-compatible install... /usr/bin/install -c
checking for pthread_create in -lpthread... yes
checking for MPI_Init in -lmpi... no
checking for exp in -lm... yes
checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for limits.h... (cached) yes
checking for strings.h... (cached) yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for an ANSI C-conforming const... yes
checking for size_t... (cached) yes
checking for int... (cached) yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for inline... inline
checking return type of signal handlers... void
checking for strftime... (cached) yes
checking for strcspn... (cached) yes
checking for strsep... (cached) yes
checking for lgamma... yes
checking which zlib implementation to use... autodetect
checking for main in -lz... yes
checking for gzbuffer... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating conf.h
config.status: conf.h is unchanged
MIGRATE-N is now setup
to compile the program you need to type one of the
commands below (ordered by preference):
SINGLE CPU machines
make # with PDF output support
# this might fail on first attempt,
# if the make fails, please let me know
# often linking fails because the C++ pdf library
# and the core migrate parts (C) mismatch
# check the Makefile line for STDLIB= -lstdc++
SMP machines more than 1 CPU in machine
make thread # uses the thread library if present
make # on macs running macos 10.6+ using GrandCentral
PARALLEL Computers, Clusters with MPI software
make mpis # each cpu-core can be treated as a node
make mpis-thread # experimental, may increase load per node!
------------------------------------------------------------------------
SPEED and other TESTING
the migrate website contains a testsuite.tar.gz that has
many tests for single, parallel and thread compilations
the tests are driven by a python script rt (see the README
in the testsuite) and a submit script that allows to streamline
submissions to a batch queue system, currently supported systems
are SUN/ORACLE GRIDENGINE, TORQUE/MOAB, and NONE
------------------------------------------------------------------------
In case there are problems with the compile send a message to the
migrate-support at google.com usergroup, include a log of
./configure
make
=======================================================================
===========================================================================
=======================<phase: build >============================
===> Building for migrate-3.6.11
(cd ./haru ; /nxb-bin/usr/bin/make -f makefile. "CC=/nxb-bin/usr/bin/c++" "CPP=/nxb-bin/usr/bin/cc" "ARCH=mips64" "MACOSVERSION=" "MYCPPFLAGS=-O2 -pipe -G0 -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ ")
make[2]: cannot open makefile..
make[2]: stopped in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/haru
*** Error code 2
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/migrate
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