[package - 111armv6-quarterly][science/py-scipy] Failed for py27-scipy-0.19.0_4 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Feb 6 01:08:25 UTC 2018
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: python at FreeBSD.org
Last committer: bapt at FreeBSD.org
Ident: $FreeBSD: branches/2018Q1/science/py-scipy/Makefile 456834 2017-12-20 15:25:16Z bapt $
Log URL: http://beefy15.nyi.freebsd.org/data/111armv6-quarterly/461031/logs/py27-scipy-0.19.0_4.log
Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=111armv6-quarterly&build=461031
Log:
=>> Building science/py-scipy
build started at Tue Feb 6 01:07:43 UTC 2018
port directory: /usr/ports/science/py-scipy
package name: py27-scipy-0.19.0_4
building for: FreeBSD 111armv6-quarterly-job-18 11.1-RELEASE-p6 FreeBSD 11.1-RELEASE-p6 1101001 arm
maintained by: python at FreeBSD.org
Makefile ident: $FreeBSD: branches/2018Q1/science/py-scipy/Makefile 456834 2017-12-20 15:25:16Z bapt $
Poudriere version: 3.2.4-42-g98f2e28b
Host OSVERSION: 1200054
Jail OSVERSION: 1101001
Job Id: 18
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PKGENV=
FLAVOR=py27
DEPENDS_ARGS=
MAKE_ARGS= FLAVOR=py27
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for py27-scipy-0.19.0_4:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
python at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27 HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--MAKE_ENV--
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usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/py27-scipy" EXAMPLESDIR="share/examples/py27-scipy" DATADIR="share/py27-scipy" WWWDIR="www/py27-scipy" ETCDIR="etc/py27-scipy"
--End PLIST_SUB--
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--End SUB_LIST--
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USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=armv6
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.1
OSVERSION=1101001
PYTHONBASE=/usr/local
UID=0
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#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
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CPP=/nxb-bin/usr/bin/cpp
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LD=/nxb-bin/usr/bin/ld
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SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
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kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py27-scipy-0.19.0_4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.3_1.txz
[111armv6-quarterly-job-18] Installing pkg-1.10.3_1...
[111armv6-quarterly-job-18] Extracting pkg-1.10.3_1: .......... done
===> py27-scipy-0.19.0_4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py27-scipy-0.19.0_4
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-scipy-0.19.0_4 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-scipy-0.19.0_4 for building
=> SHA256 Checksum OK for scipy-0.19.0.zip.
=> SHA256 Checksum OK for scipy-ref-0.19.0.pdf.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-scipy-0.19.0_4 for building
===> Extracting for py27-scipy-0.19.0_4
=> SHA256 Checksum OK for scipy-0.19.0.zip.
=> SHA256 Checksum OK for scipy-ref-0.19.0.pdf.
/nxb-bin/usr/bin/sed -i.bak -e "s|) IF(| .AND. |" /wrkdirs/usr/ports/science/py-scipy/work-py27/scipy-0.19.0/scipy/odr/odrpack/d_lpkbls.f
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py27-scipy-0.19.0_4
===========================================================================
=======================<phase: build-depends >============================
===> py27-scipy-0.19.0_4 depends on package: py27-numpy>0 - not found
===> Installing existing package /packages/All/py27-numpy-1.13.3,1.txz
[111armv6-quarterly-job-18] Installing py27-numpy-1.13.3,1...
[111armv6-quarterly-job-18] `-- Installing blas-3.5.0_3...
[111armv6-quarterly-job-18] | `-- Installing gcc6-6.4.0_3...
[111armv6-quarterly-job-18] | | `-- Installing binutils-2.28,1...
[111armv6-quarterly-job-18] | | `-- Installing gettext-runtime-0.19.8.1_1...
[111armv6-quarterly-job-18] | | | `-- Installing indexinfo-0.3.1...
[111armv6-quarterly-job-18] | | | `-- Extracting indexinfo-0.3.1: .... done
[111armv6-quarterly-job-18] | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[111armv6-quarterly-job-18] | | `-- Extracting binutils-2.28,1: .......... done
[111armv6-quarterly-job-18] | | `-- Installing gmp-6.1.2...
[111armv6-quarterly-job-18] | | `-- Extracting gmp-6.1.2: .......... done
[111armv6-quarterly-job-18] | | `-- Installing mpc-1.0.3...
[111armv6-quarterly-job-18] | | `-- Installing mpfr-3.1.6...
[111armv6-quarterly-job-18] | | `-- Extracting mpfr-3.1.6: .......... done
[111armv6-quarterly-job-18] | | `-- Extracting mpc-1.0.3: ...... done
[111armv6-quarterly-job-18] | `-- Extracting gcc6-6.4.0_3: .......... done
[111armv6-quarterly-job-18] `-- Extracting blas-3.5.0_3: ....... done
[111armv6-quarterly-job-18] `-- Installing cblas-1.0_7...
[111armv6-quarterly-job-18] `-- Extracting cblas-1.0_7: ......... done
[111armv6-quarterly-job-18] `-- Installing lapack-3.5.0_3...
[111armv6-quarterly-job-18] `-- Extracting lapack-3.5.0_3: .......... done
[111armv6-quarterly-job-18] `-- Installing py27-setuptools-36.5.0...
[111armv6-quarterly-job-18] | `-- Installing python27-2.7.14_1...
[111armv6-quarterly-job-18] | | `-- Installing libffi-3.2.1_2...
[111armv6-quarterly-job-18] | | `-- Extracting libffi-3.2.1_2: .......... done
[111armv6-quarterly-job-18] | | `-- Installing readline-7.0.3_1...
[111armv6-quarterly-job-18] | | `-- Extracting readline-7.0.3_1: .......... done
[111armv6-quarterly-job-18] | `-- Extracting python27-2.7.14_1: .......... done
[111armv6-quarterly-job-18] `-- Extracting py27-setuptools-36.5.0: .......... done
[111armv6-quarterly-job-18] `-- Installing suitesparse-4.0.2_7...
[111armv6-quarterly-job-18] | `-- Installing openblas-0.2.20_1,1...
[111armv6-quarterly-job-18] | `-- Extracting openblas-0.2.20_1,1: ......... done
[111armv6-quarterly-job-18] `-- Extracting suitesparse-4.0.2_7: .......... done
[111armv6-quarterly-job-18] Extracting py27-numpy-1.13.3,1: .......... done
Message from gcc6-6.4.0_3:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc6
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_7:
===> NOTICE:
The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python27-2.7.14_1:
===========================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
tkinter x11-toolkits/py-tkinter
===========================================================================
===> py27-scipy-0.19.0_4 depends on package: py27-numpy>0 - found
===> Returning to build of py27-scipy-0.19.0_4
===> py27-scipy-0.19.0_4 depends on executable: gfortran6 - found
===> py27-scipy-0.19.0_4 depends on package: py27-setuptools>0 - found
===> py27-scipy-0.19.0_4 depends on file: /usr/local/bin/python2.7 - found
===> py27-scipy-0.19.0_4 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py27-scipy-0.19.0_4
setup.py:323: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates
warnings.warn("Unrecognized setuptools command, proceeding with "
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 416, in <module>
setup_package()
File "setup.py", line 396, in setup_package
from numpy.distutils.core import setup
File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module>
from . import add_newdocs
File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module>
from numpy.lib import add_newdoc
File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8, in <module>
from .type_check import *
File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", line 11, in <module>
import numpy.core.numeric as _nx
File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 26, in <module>
raise ImportError(msg)
ImportError:
Importing the multiarray numpy extension module failed. Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control). Otherwise reinstall numpy.
Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv"
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-scipy
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