[package - head-armv6-default][math/py-bottleneck] Failed for py27-bottleneck-1.2.1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Mon Oct 16 23:44:00 UTC 2017
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: johannes at perceivon.net
Last committer: tcberner at FreeBSD.org
Ident: $FreeBSD: head/math/py-bottleneck/Makefile 442499 2017-06-03 14:44:02Z tcberner $
Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p452038_s324613/logs/py27-bottleneck-1.2.1.log
Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p452038_s324613
Log:
====>> Building math/py-bottleneck
build started at Mon Oct 16 23:42:51 UTC 2017
port directory: /usr/ports/math/py-bottleneck
building for: FreeBSD head-armv6-default-job-04 12.0-CURRENT FreeBSD 12.0-CURRENT 1200051 arm
maintained by: johannes at perceivon.net
Makefile ident: $FreeBSD: head/math/py-bottleneck/Makefile 442499 2017-06-03 14:44:02Z tcberner $
Poudriere version: 3.1.21
Host OSVERSION: 1200042
Jail OSVERSION: 1200051
Job Id: 04
!!! Jail is newer than host. (Jail: 1200051, Host: 1200042) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
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UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200051
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UNAME_r=12.0-CURRENT
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SAVED_TERM=
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POUDRIERE_BUILD_TYPE=bulk
PKGNAME=py27-bottleneck-1.2.1
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
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---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for py27-bottleneck-1.2.1:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-bottleneck/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-bottleneck/work HOME=/wrkdirs/usr/ports/math/py-bottleneck/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-bottleneck/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-bottleneck/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-bottleneck/work HOME=/wrkdirs/usr/ports/math/py-bottleneck/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-bottleneck/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
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PYTHON_LIBDIR=lib/python2.7
PYTHON_PLATFORM=freebsd12
PYTHON_PYOEXTENSION=pyo
PYTHON_SITELIBDIR=lib/python2.7/site-packages
PYTHON_SUFFIX=27
PYTHON_VER=2.7
PYTHON_VERSION=python2.7
PYTHON2=""
PYTHON3="@comment
"
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/py-bottleneck"
EXAMPLESDIR="share/examples/bottleneck"
DATADIR="share/bottleneck"
WWWDIR="www/bottleneck"
ETCDIR="etc/bottleneck"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bottleneck
DOCSDIR=/usr/local/share/doc/py-bottleneck
EXAMPLESDIR=/usr/local/share/examples/bottleneck
WWWDIR=/usr/local/www/bottleneck
ETCDIR=/usr/local/etc/bottleneck
--End SUB_LIST--
---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=armv6
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=12.0
OSVERSION=1200051
PYTHONBASE=/usr/local
UID=0
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#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
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FLEX=/nxb-bin/usr/bin/flex
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--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py27-bottleneck-1.2.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.1.txz
[head-armv6-default-job-04] Installing pkg-1.10.1...
[head-armv6-default-job-04] Extracting pkg-1.10.1: .......... done
===> py27-bottleneck-1.2.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py27-bottleneck-1.2.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py27-bottleneck-1.2.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py27-bottleneck-1.2.1 for building
=> SHA256 Checksum OK for Bottleneck-1.2.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py27-bottleneck-1.2.1 for building
===> Extracting for py27-bottleneck-1.2.1
=> SHA256 Checksum OK for Bottleneck-1.2.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py27-bottleneck-1.2.1
===========================================================================
=======================<phase: build-depends >============================
===> py27-bottleneck-1.2.1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found
===> Installing existing package /packages/All/py27-numpy-1.13.3,1.txz
[head-armv6-default-job-04] Installing py27-numpy-1.13.3,1...
[head-armv6-default-job-04] `-- Installing blas-3.5.0_3...
[head-armv6-default-job-04] | `-- Installing gcc6-6.4.0_2...
[head-armv6-default-job-04] | | `-- Installing binutils-2.28,1...
[head-armv6-default-job-04] | | `-- Installing gettext-runtime-0.19.8.1_1...
[head-armv6-default-job-04] | | | `-- Installing indexinfo-0.2.6...
[head-armv6-default-job-04] | | | `-- Extracting indexinfo-0.2.6: .... done
[head-armv6-default-job-04] | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[head-armv6-default-job-04] | | `-- Extracting binutils-2.28,1: .......... done
[head-armv6-default-job-04] | | `-- Installing gmp-6.1.2...
[head-armv6-default-job-04] | | `-- Extracting gmp-6.1.2: .......... done
[head-armv6-default-job-04] | | `-- Installing mpc-1.0.3...
[head-armv6-default-job-04] | | `-- Installing mpfr-3.1.6...
[head-armv6-default-job-04] | | `-- Extracting mpfr-3.1.6: .......... done
[head-armv6-default-job-04] | | `-- Extracting mpc-1.0.3: ...... done
[head-armv6-default-job-04] | `-- Extracting gcc6-6.4.0_2: .......... done
[head-armv6-default-job-04] `-- Extracting blas-3.5.0_3: ....... done
[head-armv6-default-job-04] `-- Installing cblas-1.0_7...
[head-armv6-default-job-04] `-- Extracting cblas-1.0_7: ......... done
[head-armv6-default-job-04] `-- Installing lapack-3.5.0_3...
[head-armv6-default-job-04] `-- Extracting lapack-3.5.0_3: .......... done
[head-armv6-default-job-04] `-- Installing py27-setuptools-36.5.0...
[head-armv6-default-job-04] | `-- Installing python27-2.7.14...
[head-armv6-default-job-04] | | `-- Installing libffi-3.2.1_1...
[head-armv6-default-job-04] | | `-- Extracting libffi-3.2.1_1: .......... done
[head-armv6-default-job-04] | | `-- Installing readline-7.0.3...
[head-armv6-default-job-04] | | `-- Extracting readline-7.0.3: .......... done
[head-armv6-default-job-04] | `-- Extracting python27-2.7.14: .......... done
[head-armv6-default-job-04] `-- Extracting py27-setuptools-36.5.0: .......... done
[head-armv6-default-job-04] `-- Installing suitesparse-4.0.2_7...
[head-armv6-default-job-04] | `-- Installing openblas-0.2.20_1,1...
[head-armv6-default-job-04] | `-- Extracting openblas-0.2.20_1,1: ......... done
[head-armv6-default-job-04] `-- Extracting suitesparse-4.0.2_7: .......... done
[head-armv6-default-job-04] Extracting py27-numpy-1.13.3,1: .......... done
Message from gcc6-6.4.0_2:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc6
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_7:
===> NOTICE:
The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python27-2.7.14:
===========================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
tkinter x11-toolkits/py-tkinter
===========================================================================
===> py27-bottleneck-1.2.1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found
===> Returning to build of py27-bottleneck-1.2.1
===> py27-bottleneck-1.2.1 depends on executable: cython - not found
===> Installing existing package /packages/All/cython-0.26.txz
[head-armv6-default-job-04] Installing cython-0.26...
[head-armv6-default-job-04] Extracting cython-0.26: .......... done
===> py27-bottleneck-1.2.1 depends on executable: cython - found
===> Returning to build of py27-bottleneck-1.2.1
===> py27-bottleneck-1.2.1 depends on package: py27-setuptools>0 - found
===> py27-bottleneck-1.2.1 depends on file: /usr/local/bin/python2.7 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py27-bottleneck-1.2.1
No Bottleneck unit testing available.
running config
===========================================================================
=======================<phase: build >============================
===> Building for py27-bottleneck-1.2.1
No Bottleneck unit testing available.
running build
running build_py
creating build
creating build/lib.freebsd-12.0-CURRENT-arm-2.7
creating build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck
copying bottleneck/__init__.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck
copying bottleneck/version.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck
creating build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/tests
copying bottleneck/tests/__init__.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/tests
copying bottleneck/tests/list_input_test.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/tests
copying bottleneck/tests/nonreduce_test.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/tests
copying bottleneck/tests/nonreduce_axis_test.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/tests
copying bottleneck/tests/util.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/tests
copying bottleneck/tests/scalar_input_test.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/tests
copying bottleneck/tests/move_test.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/tests
copying bottleneck/tests/reduce_test.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/tests
copying bottleneck/tests/input_modifcation_test.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/tests
creating build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/slow
copying bottleneck/slow/move.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/slow
copying bottleneck/slow/nonreduce.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/slow
copying bottleneck/slow/__init__.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/slow
copying bottleneck/slow/reduce.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/slow
copying bottleneck/slow/nonreduce_axis.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/slow
creating build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/benchmark
copying bottleneck/benchmark/bench.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/benchmark
copying bottleneck/benchmark/__init__.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/benchmark
copying bottleneck/benchmark/autotimeit.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/benchmark
copying bottleneck/benchmark/bench_detailed.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/benchmark
creating build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/src
copying bottleneck/src/__init__.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/src
copying bottleneck/src/template.py -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck/src
copying bottleneck/LICENSE -> build/lib.freebsd-12.0-CURRENT-arm-2.7/bottleneck
running build_ext
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 110, in <module>
setup(**metadata)
File "/usr/local/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/local/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/local/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/local/lib/python2.7/distutils/command/build.py", line 127, in run
self.run_command(cmd_name)
File "/usr/local/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/local/lib/python2.7/distutils/dist.py", line 971, in run_command
cmd_obj.ensure_finalized()
File "/usr/local/lib/python2.7/distutils/cmd.py", line 109, in ensure_finalized
self.finalize_options()
File "setup.py", line 25, in finalize_options
import numpy
File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module>
from . import add_newdocs
File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module>
from numpy.lib import add_newdoc
File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8, in <module>
from .type_check import *
File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", line 11, in <module>
import numpy.core.numeric as _nx
File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 26, in <module>
raise ImportError(msg)
ImportError:
Importing the multiarray numpy extension module failed. Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control). Otherwise reinstall numpy.
Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv at GCC_3.5"
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-bottleneck
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