[package - 110arm64-default][biology/ncbi-blast+] Failed for ncbi-blast+-2.5.0_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Apr 6 09:39:24 UTC 2017
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: bacon4000 at gmail.com
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: head/biology/ncbi-blast+/Makefile 437439 2017-04-01 15:23:30Z gerald $
Log URL: http://thunderx1.nyi.freebsd.org/data/110arm64-default/437513/logs/ncbi-blast+-2.5.0_1.log
Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-default&build=437513
Log:
====>> Building biology/ncbi-blast+
build started at Thu Apr 6 07:56:58 UTC 2017
port directory: /usr/ports/biology/ncbi-blast+
building for: FreeBSD 110arm64-default-job-07 11.0-RELEASE-p1 FreeBSD 11.0-RELEASE-p1 arm64
maintained by: bacon4000 at gmail.com
Makefile ident: $FreeBSD: head/biology/ncbi-blast+/Makefile 437439 2017-04-01 15:23:30Z gerald $
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Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 07
!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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--CONFIGURE_ENV--
ncbi_cv_prog_amq_w=no MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
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=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ncbi-blast+-2.5.0_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.10.1.txz
[110arm64-default-job-07] Installing pkg-1.10.1...
[110arm64-default-job-07] Extracting pkg-1.10.1: .......... done
===> ncbi-blast+-2.5.0_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-blast+-2.5.0_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
=> ncbi-blast-2.5.0+-src.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-src.tar.gz
ncbi-blast-2.5.0+-src.tar.gz 0 B 0 Bps
===> Fetching all distfiles required by ncbi-blast+-2.5.0_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.5.0_1 for building
=> SHA256 Checksum OK for ncbi-blast-2.5.0+-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.5.0_1 for building
===> Extracting for ncbi-blast+-2.5.0_1
=> SHA256 Checksum OK for ncbi-blast-2.5.0+-src.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ncbi-blast+-2.5.0_1
===> Applying FreeBSD patches for ncbi-blast+-2.5.0_1
/usr/bin/sed -i.bak -e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|' -e '/--infodir=DIR/d' -e '/--mandir=DIR/d' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/configure
/usr/bin/sed -i.bak -e 's|@prefix@|/wrkdirs/usr/ports/biology/ncbi-blast+/work/stage at prefix@|g' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.top
===========================================================================
=======================<phase: build-depends >============================
===> ncbi-blast+-2.5.0_1 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.2.1_1.txz
[110arm64-default-job-07] Installing gmake-4.2.1_1...
[110arm64-default-job-07] `-- Installing indexinfo-0.2.6...
<snip>
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive_.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/tar.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/reader_zlib.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/lzo.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/zlib.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/bzip2.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/stream_util.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/streambuf.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/stream.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/compress.cpp.
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/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/tar.cpp -o tar.o
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive.cpp -o archive.o
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o
/bin/rm -f libxcompress.a .libxcompress.a.stamp
ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o
/bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib
/bin/ln -f libxcompress.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxcompress.a
/bin/ln -f .xcompress.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xcompress.dep
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/api'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress'
/usr/local/bin/gmake -C diff -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/diff'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/diff'
/usr/local/bin/gmake -C image -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/image'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/image'
/usr/local/bin/gmake -C tables -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables'
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables/test/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables/test/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables/test/Makefile
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables TMPL=tables -w export-headers
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables TMPL=tables -w all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables/raw_scoremat.c.
/usr/local/bin/gcc5 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o
/bin/rm -f libtables.a .libtables.a.stamp
ar cr libtables.a raw_scoremat.o
/bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib
/bin/ln -f libtables.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libtables.a
/bin/ln -f .tables.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.tables.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables'
/usr/local/bin/gmake -C test -w all_r || exit 5
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables/test'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables/test'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables'
/usr/local/bin/gmake -C creaders -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/creaders TMPL=creaders -w export-headers
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/creaders TMPL=creaders -w all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/creaders/alnread.c.
/usr/local/bin/gcc5 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/creaders/alnread.c -o alnread.o
/bin/rm -f libcreaders.a .libcreaders.a.stamp
ar cr libcreaders.a alnread.o
/bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib
/bin/ln -f libcreaders.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libcreaders.a
/bin/ln -f .creaders.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.creaders.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders'
/usr/local/bin/gmake -C sequtil -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil TMPL=sequtil -w export-headers
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil TMPL=sequtil -w all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_shared.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_tables.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_manip.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil.cpp.
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o
/usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o
/bin/rm -f libsequtil.a .libsequtil.a.stamp
ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o
/bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib
/bin/ln -f libsequtil.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libsequtil.a
/bin/ln -f .sequtil.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.sequtil.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil'
/usr/local/bin/gmake -C bitset -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset'
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/test/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/test/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/test/Makefile
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/demo/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/demo/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT demo/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile
/usr/local/bin/gmake -C test -w all_r || exit 5
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/test'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/test'
/usr/local/bin/gmake -C demo -w all_r || exit 5
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/demo'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/demo'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset'
/usr/local/bin/gmake -C qparse -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/qparse'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/qparse'
/usr/local/bin/gmake -C test -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/test'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/test'
/usr/local/bin/gmake -C demo -w all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/demo'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/demo'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util'
/usr/local/bin/gmake -C connect -w all_r || exit 5
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ext/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ext/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT ext/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/ext/Makefile
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/test/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/test/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/test/Makefile
/bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/daemons/Makefile.in`
test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/daemons/Makefile.in
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT daemons/Makefile
config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/daemons/Makefile
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=connect -w export-headers
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=connssl -w export-headers
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xxconnect -w export-headers
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xconnect -w export-headers
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xthrserv -w export-headers
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
awk: can't open file /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat
source line number 1
WARNING: couldn't find connect/connect in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat
awk: can't open file /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat
source line number 1
WARNING: couldn't find connect/xconnect in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat
awk: can't open file /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat
source line number 1
WARNING: couldn't find connect/xxconnect in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=connect -w all
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_connect to make__connect_common per /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/.#lock-map.
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/parson.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_lbos.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_version.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_base64.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_local.c.
Segmentation fault (core dumped)
FAILED: src/connect/Makefile.connect.lib
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
/bin/rm -f libconnect.a .connect.dep .libconnect.a.stamp
/bin/rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libconnect.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.connect.dep \
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libconnect-static.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.connect-static.dep
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.meta_l:275: all.nonusr] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build'
gmake[1]: *** [Makefile:24: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-blast+
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