[package - 93i386-default][science/afni] Failed for afni-2015.11.13_1 in package/timeout

Sun Dec 4 05:30:29 UTC 2016

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     bacon4000 at gmail.com
Last committer: jrm at FreeBSD.org
Ident:          $FreeBSD: head/science/afni/Makefile 427397 2016-11-29 21:15:41Z jrm $
Log URL:        http://beefy3.nyi.freebsd.org/data/93i386-default/427588/logs/afni-2015.11.13_1.log
Build URL:      http://beefy3.nyi.freebsd.org/build.html?mastername=93i386-default&build=427588
Log:

====>> Building science/afni
build started at Sun Dec  4 04:03:53 UTC 2016
port directory: /usr/ports/science/afni
building for: FreeBSD 93i386-default-job-02 9.3-RELEASE-p50 FreeBSD 9.3-RELEASE-p50 i386
maintained by: bacon4000 at gmail.com
Makefile ident:      $FreeBSD: head/science/afni/Makefile 427397 2016-11-29 21:15:41Z jrm $
Poudriere version: 3.1.14
Host OSVERSION: 1200010
Jail OSVERSION: 903000
Job Id: 02

---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
UNAME_v=FreeBSD 9.3-RELEASE-p50
UNAME_r=9.3-RELEASE-p50
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=i386
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/93i386-default/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=afni-2015.11.13_1
OSREL=9.3
_OSRELEASE=9.3-RELEASE-p50
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/93i386-default/ref/.p/pool
MASTERNAME=93i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=903000
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work  HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
CC="cc" R_SHARE_DIR=/usr/local/lib/R/share MOTIFLIB="-L/usr/local/lib -lXm -lXp" XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work  HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python2.7
PYTHON_LIBDIR=lib/python2.7
PYTHON_PLATFORM=freebsd9
PYTHON_SITELIBDIR=lib/python2.7/site-packages
PYTHON_VER=2.7
PYTHON_VERSION=python2.7
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
OSREL=9.3
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/afni"
EXAMPLESDIR="share/examples/afni"
DATADIR="share/afni"
WWWDIR="www/afni"
ETCDIR="etc/afni"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/afni
DOCSDIR=/usr/local/share/doc/afni
EXAMPLESDIR=/usr/local/share/examples/afni
WWWDIR=/usr/local/www/afni
ETCDIR=/usr/local/etc/afni
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   afni-2015.11.13_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.3.txz
[93i386-default-job-02] Installing pkg-1.9.3...
[93i386-default-job-02] Extracting pkg-1.9.3: .......... done
===>   afni-2015.11.13_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of afni-2015.11.13_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-2015.11.13_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-2015.11.13_1 for building
=> SHA256 Checksum OK for afni-2015.11.13.tar.xz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-2015.11.13_1 for building
===>  Extracting for afni-2015.11.13_1
=> SHA256 Checksum OK for afni-2015.11.13.tar.xz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for afni-2015.11.13_1
===>  Applying FreeBSD patches for afni-2015.11.13_1
/usr/bin/sed -i.bak -e "s|-lglib|-lglib-2.0|g"  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/SUMA/SUMA_Makefile
/usr/bin/sed -i.bak -e "s|/bin/python|/usr/local/bin/python2.7|g"  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/python_scripts/lib_fat_Rfactor.py
/usr/bin/sed -i.bak  -e 's|os\.path\.dirname(sys\.argv\[0\])|"/usr/local/libexec"|g'  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/pkundu/meica.py
/usr/bin/sed -i.bak  -e 's|g_info|afni_g_info|g'  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/rickr/Dimon.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/rickr/Dimon1.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/afni_history_rickr.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/mri_dicom_stuff.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/mri_process_siemens.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/mri_read_dicom.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/to3d.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/mri_dicom_stuff.h
===========================================================================
=======================<phase: build-depends  >============================
===>   afni-2015.11.13_1 depends on executable: gm4 - not found
===>   Installing existing package /packages/All/m4-1.4.17_1,1.txz
[93i386-default-job-02] Installing m4-1.4.17_1,1...
[93i386-default-job-02] `-- Installing indexinfo-0.2.6...
[93i386-default-job-02] `-- Extracting indexinfo-0.2.6: .... done
[93i386-default-job-02] Extracting m4-1.4.17_1,1: .......... done
===>   afni-2015.11.13_1 depends on executable: gm4 - found
===>   Returning to build of afni-2015.11.13_1
===>   afni-2015.11.13_1 depends on executable: R - not found
===>   Installing existing package /packages/All/R-3.3.2_6.txz
[93i386-default-job-02] Installing R-3.3.2_6...
[93i386-default-job-02] `-- Installing libXt-1.1.5,1...
[93i386-default-job-02] |   `-- Installing xproto-7.0.31...
[93i386-default-job-02] |   `-- Extracting xproto-7.0.31: .......... done
[93i386-default-job-02] |   `-- Installing libSM-1.2.2_3,1...
[93i386-default-job-02] |   | `-- Installing libICE-1.0.9_1,1...
[93i386-default-job-02] |   | `-- Extracting libICE-1.0.9_1,1: .......... done
[93i386-default-job-02] |   `-- Extracting libSM-1.2.2_3,1: .......... done
[93i386-default-job-02] |   `-- Installing libX11-1.6.4,1...
[93i386-default-job-02] |   | `-- Installing kbproto-1.0.7...
[93i386-default-job-02] |   | `-- Extracting kbproto-1.0.7: .......... done
[93i386-default-job-02] |   | `-- Installing libXdmcp-1.1.2...
[93i386-default-job-02] |   | `-- Extracting libXdmcp-1.1.2: ......... done
[93i386-default-job-02] |   | `-- Installing libxcb-1.12...
[93i386-default-job-02] |   |   `-- Installing libxml2-2.9.4...
[93i386-default-job-02] |   |   | `-- Installing libiconv-1.14_9...
[93i386-default-job-02] |   |   | `-- Extracting libiconv-1.14_9: .......... done
[93i386-default-job-02] |   |   `-- Extracting libxml2-2.9.4: .......... done
[93i386-default-job-02] |   |   `-- Installing libpthread-stubs-0.3_6...
[93i386-default-job-02] |   |   `-- Extracting libpthread-stubs-0.3_6: ..... done
[93i386-default-job-02] |   |   `-- Installing libXau-1.0.8_3...
[93i386-default-job-02] |   |   `-- Extracting libXau-1.0.8_3: .......... done
[93i386-default-job-02] |   | `-- Extracting libxcb-1.12: .......... done
[93i386-default-job-02] |   `-- Extracting libX11-1.6.4,1: .......... done
[93i386-default-job-02] `-- Extracting libXt-1.1.5,1: .......... done
[93i386-default-job-02] `-- Installing pango-1.38.0_1...
<snip>
	libSUMA.a libglut.a libply.a  -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat
/bin/rm -f SurfDist
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED    -o SurfDist ../xutil.o ../LiteClue.o ../parser.o ../parser_int.o \
         SUMA_SurfDist.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ \
         libSUMA.a libglut.a libply.a  -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat
/bin/rm -f SpharmReco
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED    -o SpharmReco ../afni_warp.o ../afni_slice_byte.o ../afni_slice_short.o ../afni_slice_float.o ../afni_slice_complex.o ../afni_slice_rgbyte.o ../xutil.o ../LiteClue.o SUMA_SpharmReco.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ 	\
	../parser.o ../parser_int.o 			\
	libSUMA.a libglut.a libply.a  -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat
/bin/rm -f SpharmDeco
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED    -o SpharmDeco ../afni_warp.o ../afni_slice_byte.o ../afni_slice_short.o ../afni_slice_float.o ../afni_slice_complex.o ../afni_slice_rgbyte.o ../xutil.o ../LiteClue.o SUMA_SpharmDeco.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ 	\
	../parser.o ../parser_int.o 			\
	libSUMA.a libglut.a libply.a  -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat
/bin/rm -f prompt_user
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED    -o prompt_user ../afni_warp.o ../afni_slice_byte.o ../afni_slice_short.o ../afni_slice_float.o ../afni_slice_complex.o ../afni_slice_rgbyte.o ../xutil.o ../LiteClue.o SUMA_prompt_user.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ 	\
	../parser.o ../parser_int.o MarchingCubes/debug/MarchingCubes.o			\
	libSUMA.a libglut.a libply.a  -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat
/bin/rm -f SurfRetinoMap
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED    -o SurfRetinoMap ../afni_warp.o ../afni_slice_byte.o ../afni_slice_short.o ../afni_slice_float.o ../afni_slice_complex.o ../afni_slice_rgbyte.o \
	../xutil.o ../LiteClue.o SUMA_SurfRetinoMap.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ 	\
	../parser.o ../parser_int.o MarchingCubes/debug/MarchingCubes.o			\
	libSUMA.a libglut.a libply.a  -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat
/bin/rm -f ParseName
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED    -o ParseName ../xutil.o ../LiteClue.o ../parser.o ../parser_int.o \
         SUMA_ParseName.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ libSUMA.a libglut.a libply.a  -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat
/bin/rm -f 3dGenPriors
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED      -o 3dGenPriors ../afni_warp.o ../afni_slice_byte.o ../afni_slice_short.o ../afni_slice_float.o ../afni_slice_complex.o ../afni_slice_rgbyte.o \
	../xutil.o ../LiteClue.o SUMA_3dGenPriors.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ 	\
	../parser.o ../parser_int.o MarchingCubes/debug/MarchingCubes.o	\
	-I../3DEdge/src -l3DEdge -I../avovk libSUMA.a libglut.a libply.a  libSUMAseg.a\
	-lsegtools -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat -lgsl -lgslcblas
/bin/rm -f 3dGenFeatureDist
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED     -o 3dGenFeatureDist ../afni_warp.o ../afni_slice_byte.o ../afni_slice_short.o ../afni_slice_float.o ../afni_slice_complex.o ../afni_slice_rgbyte.o \
	../xutil.o ../LiteClue.o SUMA_3dGenFeatureDist.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ 	\
	../parser.o ../parser_int.o MarchingCubes/debug/MarchingCubes.o	\
	-I../3DEdge/src -l3DEdge -I../avovk libSUMA.a libglut.a libply.a  libSUMAseg.a \
	-lsegtools -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat -lgsl -lgslcblas
/bin/rm -f 3dSeg
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED     -o 3dSeg ../afni_warp.o ../afni_slice_byte.o ../afni_slice_short.o ../afni_slice_float.o ../afni_slice_complex.o ../afni_slice_rgbyte.o \
	../xutil.o ../LiteClue.o SUMA_3dSeg.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ 	\
	../parser.o ../parser_int.o MarchingCubes/debug/MarchingCubes.o	\
	-I../3DEdge/src -l3DEdge -I../avovk \
	libSUMA.a libglut.a libply.a  libSUMAseg.a -lsegtools -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat \
	-lgsl -lgslcblas 
/bin/rm -f SurfExtrema
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED    -o SurfExtrema ../afni_warp.o ../afni_slice_byte.o ../afni_slice_short.o ../afni_slice_float.o ../afni_slice_complex.o ../afni_slice_rgbyte.o ../xutil.o ../LiteClue.o SUMA_SurfExtrema.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ 	\
	../parser.o ../parser_int.o MarchingCubes/debug/MarchingCubes.o			\
	libSUMA.a libglut.a libply.a  -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat
/bin/rm -f 3dinfill
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED     -o 3dinfill ../afni_warp.o ../afni_slice_byte.o ../afni_slice_short.o ../afni_slice_float.o ../afni_slice_complex.o ../afni_slice_rgbyte.o \
	../xutil.o ../LiteClue.o SUMA_3dinfill.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ 	\
	../parser.o ../parser_int.o MarchingCubes/debug/MarchingCubes.o	\
	-I../3DEdge/src -l3DEdge -I../avovk \
	libSUMA.a libglut.a libply.a  libSUMAseg.a -lsegtools -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat \
	-lgsl -lgslcblas 
/bin/rm -f 3dHist
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED     -o 3dHist ../afni_warp.o ../afni_slice_byte.o ../afni_slice_short.o ../afni_slice_float.o ../afni_slice_complex.o ../afni_slice_rgbyte.o \
	../xutil.o ../LiteClue.o SUMA_3dHist.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ 	\
	../parser.o ../parser_int.o MarchingCubes/debug/MarchingCubes.o	\
	-I../3DEdge/src -l3DEdge -I../avovk libSUMA.a libglut.a libply.a  libSUMAseg.a \
	-lsegtools -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat -lgsl -lgslcblas
/bin/rm -f HalloSuma
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED    -o HalloSuma  \
         SUMA_HalloSuma.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ libSUMA.a libglut.a libply.a  -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat
/bin/rm -f InstaTract
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED    -o InstaTract  \
         SUMA_InstaTract.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ libSUMA.a libglut.a libply.a  -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat
SUMA_InstaTract.c: In function 'SendToSuma':
SUMA_InstaTract.c:351: warning: passing argument 1 of 'SUMA_Wait_Till_Stream_Goes_Bad' from incompatible pointer type
/bin/rm -f niprobe
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED    -o niprobe ../xutil.o ../LiteClue.o ../parser.o ../parser_int.o \
         SUMA_niprobe.c -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L/usr/lib -L/usr/local/lib -L../ libSUMA.a libglut.a libply.a  -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge  -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat
gmake[1]: 'SUMA_glxdino' is up to date.
gmake[1]: 'SUMA_paperplane' is up to date.
gmake[1]: 'SUMA_pixmap2eps' is up to date.
/bin/rm -f BrainSkin
cc -O2 -pipe -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -DSUMA_COMPILED \
	   -o BrainSkin SUMA_BrainSkin.c \
	-I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr	-L/usr/lib -L/usr/local/lib -L../		\
	../parser.o ../parser_int.o MarchingCubes/debug/MarchingCubes.o		\
	../xutil.o ../LiteClue.o -I../avovk -lf2c			\
	libSUMAGTS.a libSUMA.a libglut.a libply.a  libSUMAseg.a -lglib-2.0 \
	-lsegtools -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge 			\
	-lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm -lz -lxml2 -lexpat -lgsl -lgslcblas libgts.a  
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/SUMA'
( if [ ! -d ./BSD ]; then /bin/mkdir -p ./BSD; echo WARNING: directory ./BSD has been created. ; fi	;\
/bin/cp -f SUMA/suma SUMA/MakeColorMap SUMA/ROI2dataset SUMA/3dVol2Surf \
SUMA/3dSurf2Vol SUMA/SurfMeasures SUMA/SurfFWHM \
SUMA/ScaleToMap SUMA/MapIcosahedron SUMA/CreateIcosahedron \
SUMA/CompareSurfaces \
SUMA/ConvertSurface SUMA/ConvertDset SUMA/SurfClust SUMA/IsoSurface \
SUMA/ConvexHull SUMA/SUMA_glxdino SUMA/SUMA_pixmap2eps SUMA/SurfaceMetrics \
   SUMA/inspec SUMA/quickspec SUMA/FSread_annot SUMA/SurfPatch SUMA/SurfQual \
SUMA/SurfSmooth SUMA/SUMA_paperplane \
   SUMA/SampBias SUMA/3dSkullStrip SUMA/3dCRUISEtoAFNI \
   SUMA/3dBRAIN_VOYAGERtoAFNI SUMA/3dSurfMask \
   SUMA/SurfToSurf  SUMA/Surf2VolCoord  SUMA/ROIgrow SUMA/SurfDsetInfo \
   SUMA/SurfInfo SUMA/AnalyzeTrace SUMA/DriveSuma SUMA/SurfDist \
   SUMA/SpharmReco SUMA/SpharmDeco SUMA/prompt_user SUMA/SurfRetinoMap \
   SUMA/ParseName SUMA/3dGenPriors SUMA/3dGenFeatureDist SUMA/3dSeg \
   SUMA/SurfExtrema SUMA/3dinfill \
   SUMA/3dHist SUMA/HalloSuma SUMA/InstaTract SUMA/niprobe SUMA/BrainSkin \
   ./BSD ; \
if [ -f SUMA/SurfMesh ]; then /bin/cp -f SUMA/SurfMesh ./BSD ; fi; \
/bin/cp -f @SUMA_* ./BSD ;)
/bin/mkdir -p /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/bin  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/scripts  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/lib  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/include  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/trash  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/doc  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/share
/bin/mv	/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/BSD/libf2c.a  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/trash
/bin/mv	/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/BSD/*.a  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/BSD/*.so  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/lib
/bin/mv	/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/BSD/funstuff  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/BSD/AFNI.*rc  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/BSD/afnigui*  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/share
/bin/mv	/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/BSD/*.h  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/include
/bin/mv	/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/BSD/README*  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/doc
for binary in `/usr/bin/file /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/BSD/* | fgrep 'ELF' | /usr/bin/awk -F ':' ' { print $1 }'` ; do  /bin/mv ${binary} /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/bin ;  done
/bin/mv	/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/BSD/*  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/scripts
/bin/mv	/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/scripts/meica.libs /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage
===========================================================================
=======================<phase: run-depends    >============================
===>   afni-2015.11.13_1 depends on executable: endian - not found
===>   Installing existing package /packages/All/endian-1.1.txz
[93i386-default-job-02] Installing endian-1.1...
[93i386-default-job-02] Extracting endian-1.1: ..... done
===>   afni-2015.11.13_1 depends on executable: endian - found
===>   Returning to build of afni-2015.11.13_1
===>   afni-2015.11.13_1 depends on executable: mpeg_encode - not found
===>   Installing existing package /packages/All/mpeg_encode-1.5b.txz
[93i386-default-job-02] Installing mpeg_encode-1.5b...
[93i386-default-job-02] Extracting mpeg_encode-1.5b: .... done
===>   afni-2015.11.13_1 depends on executable: mpeg_encode - found
===>   Returning to build of afni-2015.11.13_1
===>   afni-2015.11.13_1 depends on executable: ppmtogif - not found
===>   Installing existing package /packages/All/netpbm-10.35.98.txz
[93i386-default-job-02] Installing netpbm-10.35.98...
[93i386-default-job-02] `-- Installing jasper-1.900.1_16...
[93i386-default-job-02] `-- Extracting jasper-1.900.1_16: .......... done
[93i386-default-job-02] Extracting netpbm-10.35.98: .......... done
Message from jasper-1.900.1_16:
===>   NOTICE:

The jasper port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from netpbm-10.35.98:
===>   NOTICE:

The netpbm port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   afni-2015.11.13_1 depends on executable: ppmtogif - found
===>   Returning to build of afni-2015.11.13_1
===>   afni-2015.11.13_1 depends on executable: qhull - not found
===>   Installing existing package /packages/All/qhull5-1.0_3.txz
[93i386-default-job-02] Installing qhull5-1.0_3...
[93i386-default-job-02] Extracting qhull5-1.0_3: .......... done
===>   afni-2015.11.13_1 depends on executable: qhull - found
===>   Returning to build of afni-2015.11.13_1
===>   afni-2015.11.13_1 depends on executable: R - found
===>   afni-2015.11.13_1 depends on executable: cjpeg - found
===>   afni-2015.11.13_1 depends on file: /usr/local/bin/python2.7 - found
===>   afni-2015.11.13_1 depends on package: libGL>0 - found
===>   afni-2015.11.13_1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===>   afni-2015.11.13_1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found
===>   afni-2015.11.13_1 depends on file: /usr/local/libdata/pkgconfig/xi.pc - found
===>   afni-2015.11.13_1 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found
===>   afni-2015.11.13_1 depends on file: /usr/local/libdata/pkgconfig/xp.pc - found
===>   afni-2015.11.13_1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found
===>   afni-2015.11.13_1 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - found
===>   afni-2015.11.13_1 depends on package: perl5>=5.24<5.25 - found
===========================================================================
=======================<phase: stage          >============================
===>  Staging for afni-2015.11.13_1
===>   Generating temporary packing list
/bin/mkdir -p /wrkdirs/usr/ports/science/afni/work/stage/usr/local/share/afni  /wrkdirs/usr/ports/science/afni/work/stage/usr/local/lib/afni  /wrkdirs/usr/ports/science/afni/work/stage/usr/local/include/afni
for f in /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/lib/*; do  /usr/bin/strip ${f};  done
install  -m 0644 /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/lib/* /wrkdirs/usr/ports/science/afni/work/stage/usr/local/lib/afni
install  -m 0644 /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/include/* /wrkdirs/usr/ports/science/afni/work/stage/usr/local/include/afni
cd /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/share && /bin/sh -c '(/usr/bin/find -Ed $0 $2 | /usr/bin/cpio -dumpl $1 >/dev/null 2>&1) &&  /usr/bin/find -Ed $0 $2 \(   -type d -exec /bin/sh -c '\''cd '\''$1'\'' && chmod 755 "$@"'\'' -- . {} +  -o -type f -exec /bin/sh -c '\''cd '\''$1'\'' && chmod 444 "$@"'\'' -- . {} + \)' -- . /wrkdirs/usr/ports/science/afni/work/stage/usr/local/share/afni
install  -s -m 555 /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/bin/* /wrkdirs/usr/ports/science/afni/work/stage/usr/local/bin
install  -m 555 /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/scripts/* /wrkdirs/usr/ports/science/afni/work/stage/usr/local/bin
cd /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage && /bin/sh -c '(/usr/bin/find -Ed $0 $2 | /usr/bin/cpio -dumpl $1 >/dev/null 2>&1) &&  /usr/bin/find -Ed $0 $2 \(   -type d -exec /bin/sh -c '\''cd '\''$1'\'' && chmod 755 "$@"'\'' -- . {} +  -o -type f -exec /bin/sh -c '\''cd '\''$1'\'' && chmod 555 "$@"'\'' -- . {} + \)' -- meica.libs  /wrkdirs/usr/ports/science/afni/work/stage/usr/local/libexec
install  -m 0644 /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/Atlases/* /wrkdirs/usr/ports/science/afni/work/stage/usr/local/share/afni
install  -m 444 /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/afni.1 /wrkdirs/usr/ports/science/afni/work/stage/usr/local/man/man1
/bin/mkdir -p /wrkdirs/usr/ports/science/afni/work/stage/usr/local/share/doc/afni /wrkdirs/usr/ports/science/afni/work/stage/usr/local/etc/mri
install  -m 0644 /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/prestage/doc/* /wrkdirs/usr/ports/science/afni/work/stage/usr/local/share/doc/afni
install  -m 555 /wrkdirs/usr/ports/science/afni/work/afni.cshrc /wrkdirs/usr/ports/science/afni/work/afni.profile  /wrkdirs/usr/ports/science/afni/work/stage/usr/local/etc/mri
====> Compressing man pages (compress-man)
===========================================================================
=======================<phase: package        >============================
===>  Building package for afni-2015.11.13_1
====>> Killing timed out build after 3600 seconds