[package - 110mips64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

Tue Nov 29 03:57:05 UTC 2016

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     bacon4000 at gmail.com
Last committer: swills at FreeBSD.org
Ident:          $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 2015-12-13 16:07:27Z swills $
Log URL:        http://beefy16.nyi.freebsd.org/data/110mips64-quarterly/427352/logs/bwa-0.7.9a.log
Build URL:      http://beefy16.nyi.freebsd.org/build.html?mastername=110mips64-quarterly&build=427352
Log:

====>> Building biology/bwa
build started at Tue Nov 29 03:56:59 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110mips64-quarterly-job-08 11.0-RELEASE-p3 FreeBSD 11.0-RELEASE-p3 r308202 mips
maintained by: bacon4000 at gmail.com
Makefile ident:      $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1200010
Jail OSVERSION: 1100122
Job Id: 08

---Begin Environment---
SHELL=/bin/csh
UNAME_p=mips64
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
UNAME_v=FreeBSD 11.0-RELEASE-p3 r308202
UNAME_r=11.0-RELEASE-p3
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=mips64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110mips64-quarterly/ref
QEMU_EMULATING=1
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p3
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=28
PWD=/usr/local/poudriere/data/.m/110mips64-quarterly/ref/.p/pool
MASTERNAME=110mips64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0  -msse2 -fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -msse2 -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
MACHINE=mips
MACHINE_ARCH=mips64
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
=======================<phase: check-sanity   >============================
===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110mips64-quarterly-job-08] Installing pkg-1.8.8...
[110mips64-quarterly-job-08] Extracting pkg-1.8.8: .......... done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of bwa-0.7.9a
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by bwa-0.7.9a for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by bwa-0.7.9a for building
=> SHA256 Checksum OK for bwa-0.7.9a.tar.bz2.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by bwa-0.7.9a for building
===>  Extracting for bwa-0.7.9a
=> SHA256 Checksum OK for bwa-0.7.9a.tar.bz2.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for bwa-0.7.9a
===>  Applying FreeBSD patches for bwa-0.7.9a
===========================================================================
=======================<phase: build-depends  >============================
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for bwa-0.7.9a
===========================================================================
=======================<phase: build          >============================
===>  Building for bwa-0.7.9a
/nxb-bin/usr/bin/cc -c -O2 -pipe -G0  -msse2 -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS  utils.c -o utils.o
cc1: error: unrecognized command line option "-msse2"
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/bwa/work/bwa-0.7.9a
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/bwa