[package - 110amd64-default][biology/biojava] Failed for biojava-1.7, 1 in extract

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Sun Oct 23 01:42:22 UTC 2016 

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     wenheping at gmail.com
Last committer: mat at FreeBSD.org
Ident:          $FreeBSD: head/biology/biojava/Makefile 418767 2016-07-19 11:04:13Z mat $
Log URL:        http://beefy9.nyi.freebsd.org/data/110amd64-default/424492/logs/biojava-1.7,1.log
Build URL:      http://beefy9.nyi.freebsd.org/build.html?mastername=110amd64-default&build=424492
Log:

====>> Building biology/biojava
build started at Sun Oct 23 01:42:18 UTC 2016
port directory: /usr/ports/biology/biojava
building for: FreeBSD 110amd64-default-job-08 11.0-RELEASE-p1 FreeBSD 11.0-RELEASE-p1 r306420 amd64
maintained by: wenheping at gmail.com
Makefile ident:      $FreeBSD: head/biology/biojava/Makefile 418767 2016-07-19 11:04:13Z mat $
Poudriere version: 3.1.14
Host OSVERSION: 1200005
Jail OSVERSION: 1100122

---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1 r306420
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
ARCH=amd64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110amd64-default/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=biojava-1.7,1
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/110amd64-default/ref/.p/pool
HAVE_COMPAT_IA32_KERN=YES OPSYS=FreeBSD
MASTERNAME=110amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for biojava-1.7,1:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/biojava/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/biojava/work  HOME=/wrkdirs/usr/ports/biology/biojava/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
CLASSPATH="/usr/local/share/java/classes" JAVA_HOME=/usr/local/openjdk8 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/biojava/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/biojava/work  HOME=/wrkdirs/usr/ports/biology/biojava/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
JAVASHAREDIR="share/java"
JAVAJARDIR="share/java/classes"
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/biojava"
EXAMPLESDIR="share/examples/biojava"
DATADIR="share/biojava"
WWWDIR="www/biojava"
ETCDIR="etc/biojava"
--End PLIST_SUB--

--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java"
JAVAJARDIR="/usr/local/share/java/classes"
JAVALIBDIR="/usr/local/share/java/classes"
JAVA_VERSION="1.6+"
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/biojava
DOCSDIR=/usr/local/share/doc/biojava
EXAMPLESDIR=/usr/local/share/examples/biojava
WWWDIR=/usr/local/www/biojava
ETCDIR=/usr/local/etc/biojava
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   biojava-1.7,1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.1.txz
[110amd64-default-job-08] Installing pkg-1.9.1...
[110amd64-default-job-08] Extracting pkg-1.9.1: .......... done
===>   biojava-1.7,1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of biojava-1.7,1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===> Fetching all distfiles required by biojava-1.7,1 for building
===========================================================================
=======================<phase: checksum       >============================
===> Fetching all distfiles required by biojava-1.7,1 for building
=> SHA256 Checksum OK for biojava-1.7-all.jar.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===> Fetching all distfiles required by biojava-1.7,1 for building
===>  Extracting for biojava-1.7,1
=> SHA256 Checksum OK for biojava-1.7-all.jar.
META-INF/MANIFEST.MF: Could not stat META-INF/MANIFEST.MF
biojava-1.7/apps/: Could not stat biojava-1.7/apps
biojava-1.7/apps/org/: Could not stat biojava-1.7/apps/org
biojava-1.7/apps/org/biojava/: Could not stat biojava-1.7/apps/org/biojava
biojava-1.7/apps/org/biojava/app/: Could not stat biojava-1.7/apps/org/biojava/app
biojava-1.7/apps/org/biojava/app/BioFlatIndex.java: Could not stat biojava-1.7/apps/org/biojava/app/BioFlatIndex.java
biojava-1.7/apps/org/biojava/app/BioGetSeq.java: Could not stat biojava-1.7/apps/org/biojava/app/BioGetSeq.java
biojava-1.7/apps-1.7.jar: Could not stat biojava-1.7/apps-1.7.jar
biojava-1.7/biojava-1.7.jar: Could not stat biojava-1.7/biojava-1.7.jar
biojava-1.7/build.xml: Could not stat biojava-1.7/build.xml
biojava-1.7/bytecode.jar: Could not stat biojava-1.7/bytecode.jar
biojava-1.7/commons-cli.jar: Could not stat biojava-1.7/commons-cli.jar
biojava-1.7/commons-collections-2.1.jar: Could not stat biojava-1.7/commons-collections-2.1.jar
biojava-1.7/commons-dbcp-1.1.jar: Could not stat biojava-1.7/commons-dbcp-1.1.jar
biojava-1.7/commons-pool-1.1.jar: Could not stat biojava-1.7/commons-pool-1.1.jar
biojava-1.7/demos/: Could not stat biojava-1.7/demos
biojava-1.7/demos/annodb/: Could not stat biojava-1.7/demos/annodb
biojava-1.7/demos/annodb/CreateIndexDB.java: Could not stat biojava-1.7/demos/annodb/CreateIndexDB.java
biojava-1.7/demos/biosql/: Could not stat biojava-1.7/demos/biosql
biojava-1.7/demos/biosql/DummyFromGFF.java: Could not stat biojava-1.7/demos/biosql/DummyFromGFF.java
biojava-1.7/demos/biosql/LargeSequenceTest.java: Could not stat biojava-1.7/demos/biosql/LargeSequenceTest.java
biojava-1.7/demos/biosql/SeqDumper.java: Could not stat biojava-1.7/demos/biosql/SeqDumper.java
biojava-1.7/demos/biosql/SeqEMBL.java: Could not stat biojava-1.7/demos/biosql/SeqEMBL.java
biojava-1.7/demos/biosql/SeqGFF.java: Could not stat biojava-1.7/demos/biosql/SeqGFF.java
biojava-1.7/demos/biosql/SequenceTest.java: Could not stat biojava-1.7/demos/biosql/SequenceTest.java
biojava-1.7/demos/biosql/UploadFlat.java: Could not stat biojava-1.7/demos/biosql/UploadFlat.java
biojava-1.7/demos/blastxml/: Could not stat biojava-1.7/demos/blastxml
biojava-1.7/demos/blastxml/BlastParser.java: Could not stat biojava-1.7/demos/blastxml/BlastParser.java
biojava-1.7/demos/blastxml/input.xml: Could not stat biojava-1.7/demos/blastxml/input.xml
biojava-1.7/demos/CircLocTest/: Could not stat biojava-1.7/demos/CircLocTest
biojava-1.7/demos/CircLocTest/CircularLocationTester.java: Could not stat biojava-1.7/demos/CircLocTest/CircularLocationTester.java
biojava-1.7/demos/CircLocTest/TestFrame.java: Could not stat biojava-1.7/demos/CircLocTest/TestFrame.java
biojava-1.7/demos/das/: Could not stat biojava-1.7/demos/das
biojava-1.7/demos/das/TestDAS.java: Could not stat biojava-1.7/demos/das/TestDAS.java
biojava-1.7/demos/das/TestDASG.java: Could not stat biojava-1.7/demos/das/TestDASG.java
biojava-1.7/demos/das/TestDASH.java: Could not stat biojava-1.7/demos/das/TestDASH.java
biojava-1.7/demos/das/TestDSN.java: Could not stat biojava-1.7/demos/das/TestDSN.java
biojava-1.7/demos/dist/: Could not stat biojava-1.7/demos/dist
biojava-1.7/demos/dist/TestDistribution.java: Could not stat biojava-1.7/demos/dist/TestDistribution.java
biojava-1.7/demos/dist/TestOrderNAlphabet.java: Could not stat biojava-1.7/demos/dist/TestOrderNAlphabet.java
biojava-1.7/demos/dist/TestOrderNDistribution.java: Could not stat biojava-1.7/demos/dist/TestOrderNDistribution.java
biojava-1.7/demos/dist/Tools.java: Could not stat biojava-1.7/demos/dist/Tools.java
biojava-1.7/demos/dp/: Could not stat biojava-1.7/demos/dp
biojava-1.7/demos/dp/Dice.java: Could not stat biojava-1.7/demos/dp/Dice.java
biojava-1.7/demos/dp/fake.fasta: Could not stat biojava-1.7/demos/dp/fake.fasta
biojava-1.7/demos/dp/fakepromoter.xml: Could not stat biojava-1.7/demos/dp/fakepromoter.xml
biojava-1.7/demos/dp/package.html: Could not stat biojava-1.7/demos/dp/package.html
biojava-1.7/demos/dp/PairwiseAlignment.java: Could not stat biojava-1.7/demos/dp/PairwiseAlignment.java
biojava-1.7/demos/dp/PatternFinder.java: Could not stat biojava-1.7/demos/dp/PatternFinder.java
biojava-1.7/demos/dp/SearchProfile.java: Could not stat biojava-1.7/demos/dp/SearchProfile.java
biojava-1.7/demos/dp/ViterbiAlign.java: Could not stat biojava-1.7/demos/dp/ViterbiAlign.java
biojava-1.7/demos/eventbasedparsing/: Could not stat biojava-1.7/demos/eventbasedparsing
biojava-1.7/demos/eventbasedparsing/Blast2HTML.java: Could not stat biojava-1.7/demos/eventbasedparsing/Blast2HTML.java
biojava-1.7/demos/eventbasedparsing/BlastLike2XML.java: Could not stat biojava-1.7/demos/eventbasedparsing/BlastLike2XML.java
biojava-1.7/demos/eventbasedparsing/Fasta2XML.java: Could not stat biojava-1.7/demos/eventbasedparsing/Fasta2XML.java
biojava-1.7/demos/eventbasedparsing/Pdb2XML.java: Could not stat biojava-1.7/demos/eventbasedparsing/Pdb2XML.java
biojava-1.7/demos/eventbasedparsing/stylesheets/: Could not stat biojava-1.7/demos/eventbasedparsing/stylesheets
biojava-1.7/demos/eventbasedparsing/stylesheets/copyall.xsl: Could not stat biojava-1.7/demos/eventbasedparsing/stylesheets/copyall.xsl
biojava-1.7/demos/eventbasedparsing/stylesheets/hitlisthtml.xsl: Could not stat biojava-1.7/demos/eventbasedparsing/stylesheets/hitlisthtml.xsl
biojava-1.7/demos/eventbasedparsing/TutorialEx1.java: Could not stat biojava-1.7/demos/eventbasedparsing/TutorialEx1.java
biojava-1.7/demos/eventbasedparsing/TutorialEx1Handler.java: Could not stat biojava-1.7/demos/eventbasedparsing/TutorialEx1Handler.java
biojava-1.7/demos/files/: Could not stat biojava-1.7/demos/files
<snip>
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastn2_0_11Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastn2_0_11Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastn2_2_3Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastn2_2_3Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastp2_0_11Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastp2_0_11Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastp2_2_3Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastp2_2_3Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastx2_0_11Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastx2_0_11Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastx2_2_3Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBIblastx2_2_3Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBItblastn2_0_11Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBItblastn2_0_11Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBItblastn2_2_3Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBItblastn2_2_3Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBItblastx2_0_11Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBItblastx2_0_11Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBItblastx2_2_3Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindNCBItblastx2_2_3Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindWUblastn2_0a19Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindWUblastn2_0a19Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindWUblastp2_0a19Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindWUblastp2_0a19Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindWUblastx2_0a19Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindWUblastx2_0a19Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindWUtblastn2_0a19Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindWUtblastn2_0a19Test.java
biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindWUtblastx2_0a19Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/program/ssbind/SSBindWUtblastx2_0a19Test.java
biojava-1.7/tests/org/biojava/bio/proteomics/: Could not stat biojava-1.7/tests/org/biojava/bio/proteomics
biojava-1.7/tests/org/biojava/bio/proteomics/aaindex/: Could not stat biojava-1.7/tests/org/biojava/bio/proteomics/aaindex
biojava-1.7/tests/org/biojava/bio/proteomics/aaindex/AAindexStreamReaderTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/proteomics/aaindex/AAindexStreamReaderTest.java
biojava-1.7/tests/org/biojava/bio/proteomics/aaindex/AAindexTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/proteomics/aaindex/AAindexTest.java
biojava-1.7/tests/org/biojava/bio/proteomics/aaindex/SimpleSymbolPropertyTableDBTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/proteomics/aaindex/SimpleSymbolPropertyTableDBTest.java
biojava-1.7/tests/org/biojava/bio/proteomics/IsoelectricPointCalcTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/proteomics/IsoelectricPointCalcTest.java
biojava-1.7/tests/org/biojava/bio/proteomics/MassCalcTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/proteomics/MassCalcTest.java
biojava-1.7/tests/org/biojava/bio/search/: Could not stat biojava-1.7/tests/org/biojava/bio/search
biojava-1.7/tests/org/biojava/bio/search/MaxMismatchPatternTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/search/MaxMismatchPatternTest.java
biojava-1.7/tests/org/biojava/bio/search/SeqContentPatternTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/search/SeqContentPatternTest.java
biojava-1.7/tests/org/biojava/bio/search/SimpleSeqSimilaritySearchHitTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/search/SimpleSeqSimilaritySearchHitTest.java
biojava-1.7/tests/org/biojava/bio/search/SimpleSeqSimilaritySearchResultTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/search/SimpleSeqSimilaritySearchResultTest.java
biojava-1.7/tests/org/biojava/bio/search/SimpleSeqSimilaritySearchSubHitTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/search/SimpleSeqSimilaritySearchSubHitTest.java
biojava-1.7/tests/org/biojava/bio/seq/: Could not stat biojava-1.7/tests/org/biojava/bio/seq
biojava-1.7/tests/org/biojava/bio/seq/CircularSequenceTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/CircularSequenceTest.java
biojava-1.7/tests/org/biojava/bio/seq/db/: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db
biojava-1.7/tests/org/biojava/bio/seq/db/AbstractSequenceDBTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/AbstractSequenceDBTest.java
biojava-1.7/tests/org/biojava/bio/seq/db/biosql/: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/biosql
biojava-1.7/tests/org/biojava/bio/seq/db/biosql/BioSQLSequenceDBTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/biosql/BioSQLSequenceDBTest.java
biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/emblcd
biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/acnum.hit: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/acnum.hit
biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/acnum.trg: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/acnum.trg
biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/division.lkp: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/division.lkp
biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/DivisionLkpReaderTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/DivisionLkpReaderTest.java
biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/entrynam.idx: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/entrynam.idx
biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/EntryNamIdxReaderTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/EntryNamIdxReaderTest.java
biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/EntryNamRandomAccessTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/EntryNamRandomAccessTest.java
biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/protDB1.aa: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/protDB1.aa
biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/protDB2.aa: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/protDB2.aa
biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/protDB3.aa: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/emblcd/protDB3.aa
biojava-1.7/tests/org/biojava/bio/seq/db/EmblCDROMIndexStoreTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/EmblCDROMIndexStoreTest.java
biojava-1.7/tests/org/biojava/bio/seq/db/HashSequenceDBTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/HashSequenceDBTest.java
biojava-1.7/tests/org/biojava/bio/seq/db/TestHashSequenceDB.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/db/TestHashSequenceDB.java
biojava-1.7/tests/org/biojava/bio/seq/DNAToolsTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/DNAToolsTest.java
biojava-1.7/tests/org/biojava/bio/seq/FeatureFilterTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/FeatureFilterTest.java
biojava-1.7/tests/org/biojava/bio/seq/FeatureHolderUtilsTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/FeatureHolderUtilsTest.java
biojava-1.7/tests/org/biojava/bio/seq/filter/: Could not stat biojava-1.7/tests/org/biojava/bio/seq/filter
biojava-1.7/tests/org/biojava/bio/seq/filter/FilterTransformerTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/filter/FilterTransformerTest.java
biojava-1.7/tests/org/biojava/bio/seq/FilterUtilsTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/FilterUtilsTest.java
biojava-1.7/tests/org/biojava/bio/seq/homol/: Could not stat biojava-1.7/tests/org/biojava/bio/seq/homol
biojava-1.7/tests/org/biojava/bio/seq/homol/SimpleSimilarityPairFeatureTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/homol/SimpleSimilarityPairFeatureTest.java
biojava-1.7/tests/org/biojava/bio/seq/impl/: Could not stat biojava-1.7/tests/org/biojava/bio/seq/impl
biojava-1.7/tests/org/biojava/bio/seq/impl/GappedSequenceTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/impl/GappedSequenceTest.java
biojava-1.7/tests/org/biojava/bio/seq/impl/SubSequenceTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/impl/SubSequenceTest.java
biojava-1.7/tests/org/biojava/bio/seq/impl/ViewSeqSerializationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/impl/ViewSeqSerializationTest.java
biojava-1.7/tests/org/biojava/bio/seq/impl/ViewSequenceTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/impl/ViewSequenceTest.java
biojava-1.7/tests/org/biojava/bio/seq/io/: Could not stat biojava-1.7/tests/org/biojava/bio/seq/io
biojava-1.7/tests/org/biojava/bio/seq/io/filterxml/: Could not stat biojava-1.7/tests/org/biojava/bio/seq/io/filterxml
biojava-1.7/tests/org/biojava/bio/seq/io/filterxml/FilterXMLTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/io/filterxml/FilterXMLTest.java
biojava-1.7/tests/org/biojava/bio/seq/io/LocationFormatterTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/io/LocationFormatterTest.java
biojava-1.7/tests/org/biojava/bio/seq/io/MSFAlignmentFormatTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/io/MSFAlignmentFormatTest.java
biojava-1.7/tests/org/biojava/bio/seq/io/SeqIOToolsTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/io/SeqIOToolsTest.java
biojava-1.7/tests/org/biojava/bio/seq/io/SmartSequenceBuilderTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/io/SmartSequenceBuilderTest.java
biojava-1.7/tests/org/biojava/bio/seq/io/SymbolListCharSequenceTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/io/SymbolListCharSequenceTest.java
biojava-1.7/tests/org/biojava/bio/seq/MergeFeatureHolderTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/MergeFeatureHolderTest.java
biojava-1.7/tests/org/biojava/bio/seq/NewSimpleAssemblyTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/NewSimpleAssemblyTest.java
biojava-1.7/tests/org/biojava/bio/seq/project/: Could not stat biojava-1.7/tests/org/biojava/bio/seq/project
biojava-1.7/tests/org/biojava/bio/seq/project/ProjectedFeatureHolderTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/project/ProjectedFeatureHolderTest.java
biojava-1.7/tests/org/biojava/bio/seq/ProteinToolsTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/ProteinToolsTest.java
biojava-1.7/tests/org/biojava/bio/seq/RNAToolsTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/RNAToolsTest.java
biojava-1.7/tests/org/biojava/bio/seq/SeqSerializationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/SeqSerializationTest.java
biojava-1.7/tests/org/biojava/bio/seq/SimpleAssemblyTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/seq/SimpleAssemblyTest.java
biojava-1.7/tests/org/biojava/bio/structure/: Could not stat biojava-1.7/tests/org/biojava/bio/structure
biojava-1.7/tests/org/biojava/bio/structure/MMcifTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/structure/MMcifTest.java
biojava-1.7/tests/org/biojava/bio/structure/PdbFileFormat30Test.java: Could not stat biojava-1.7/tests/org/biojava/bio/structure/PdbFileFormat30Test.java
biojava-1.7/tests/org/biojava/bio/structure/PDBFileParserTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/structure/PDBFileParserTest.java
biojava-1.7/tests/org/biojava/bio/structure/SourceCompoundTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/structure/SourceCompoundTest.java
biojava-1.7/tests/org/biojava/bio/structure/StructurePairAlignerTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/structure/StructurePairAlignerTest.java
biojava-1.7/tests/org/biojava/bio/structure/StructureTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/structure/StructureTest.java
biojava-1.7/tests/org/biojava/bio/structure/StructureToolsTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/structure/StructureToolsTest.java
biojava-1.7/tests/org/biojava/bio/symbol/: Could not stat biojava-1.7/tests/org/biojava/bio/symbol
biojava-1.7/tests/org/biojava/bio/symbol/AbstractSymbolEventTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/AbstractSymbolEventTest.java
biojava-1.7/tests/org/biojava/bio/symbol/AlphabetManagerTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/AlphabetManagerTest.java
biojava-1.7/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java
biojava-1.7/tests/org/biojava/bio/symbol/BetweenLocationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/BetweenLocationTest.java
biojava-1.7/tests/org/biojava/bio/symbol/CircularLocationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/CircularLocationTest.java
biojava-1.7/tests/org/biojava/bio/symbol/CodonPrefToolsTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/CodonPrefToolsTest.java
biojava-1.7/tests/org/biojava/bio/symbol/CompoundLocationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/CompoundLocationTest.java
biojava-1.7/tests/org/biojava/bio/symbol/CrossProductAlphabetIndexTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/CrossProductAlphabetIndexTest.java
biojava-1.7/tests/org/biojava/bio/symbol/CrossProductTokenizationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/CrossProductTokenizationTest.java
biojava-1.7/tests/org/biojava/bio/symbol/DoubleAlphabetTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/DoubleAlphabetTest.java
biojava-1.7/tests/org/biojava/bio/symbol/FundamentalAtomicSymbolEventTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/FundamentalAtomicSymbolEventTest.java
biojava-1.7/tests/org/biojava/bio/symbol/GappedSymbolListTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/GappedSymbolListTest.java
biojava-1.7/tests/org/biojava/bio/symbol/IndexedNoAmbPackTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/IndexedNoAmbPackTest.java
biojava-1.7/tests/org/biojava/bio/symbol/IntegerAlphabetTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/IntegerAlphabetTest.java
biojava-1.7/tests/org/biojava/bio/symbol/LinearAlphabetIndexTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/LinearAlphabetIndexTest.java
biojava-1.7/tests/org/biojava/bio/symbol/MergeLocationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/MergeLocationTest.java
biojava-1.7/tests/org/biojava/bio/symbol/MotifToolsTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/MotifToolsTest.java
biojava-1.7/tests/org/biojava/bio/symbol/NameTokenizationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/NameTokenizationTest.java
biojava-1.7/tests/org/biojava/bio/symbol/PointLocationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/PointLocationTest.java
biojava-1.7/tests/org/biojava/bio/symbol/RangeLocationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/RangeLocationTest.java
biojava-1.7/tests/org/biojava/bio/symbol/SimpleAtomicSymbolEventTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/SimpleAtomicSymbolEventTest.java
biojava-1.7/tests/org/biojava/bio/symbol/SimpleBasisSymbolEventTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/SimpleBasisSymbolEventTest.java
biojava-1.7/tests/org/biojava/bio/symbol/SimpleCodonPrefTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/SimpleCodonPrefTest.java
biojava-1.7/tests/org/biojava/bio/symbol/SimpleSymbolEventTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/SimpleSymbolEventTest.java
biojava-1.7/tests/org/biojava/bio/symbol/SimpleSymbolListTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/SimpleSymbolListTest.java
biojava-1.7/tests/org/biojava/bio/symbol/SimpleWobbleDistributionTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/SimpleWobbleDistributionTest.java
biojava-1.7/tests/org/biojava/bio/symbol/SymbolListTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/SymbolListTest.java
biojava-1.7/tests/org/biojava/bio/symbol/SymbolSerializationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/SymbolSerializationTest.java
biojava-1.7/tests/org/biojava/bio/symbol/SymbolUtils.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/SymbolUtils.java
biojava-1.7/tests/org/biojava/bio/symbol/TestSoftMaskedAlphabet.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/TestSoftMaskedAlphabet.java
biojava-1.7/tests/org/biojava/bio/symbol/TranslationTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/TranslationTest.java
biojava-1.7/tests/org/biojava/bio/symbol/UkkonenSuffixTreeTest.java: Could not stat biojava-1.7/tests/org/biojava/bio/symbol/UkkonenSuffixTreeTest.java
biojava-1.7/tests/org/biojava/directory/: Could not stat biojava-1.7/tests/org/biojava/directory
biojava-1.7/tests/org/biojava/directory/OBDARegistryParserTest.java: Could not stat biojava-1.7/tests/org/biojava/directory/OBDARegistryParserTest.java
biojava-1.7/tests/org/biojava/directory/RegistryConfigurationTest.java: Could not stat biojava-1.7/tests/org/biojava/directory/RegistryConfigurationTest.java
biojava-1.7/tests/org/biojava/directory/seqdatabase.ini: Could not stat biojava-1.7/tests/org/biojava/directory/seqdatabase.ini
biojava-1.7/tests/org/biojava/directory/SystemRegistryTest.java: Could not stat biojava-1.7/tests/org/biojava/directory/SystemRegistryTest.java
biojava-1.7/tests/org/biojava/naming/: Could not stat biojava-1.7/tests/org/biojava/naming
biojava-1.7/tests/org/biojava/naming/ObdaInitialContextFactoryTest.java: Could not stat biojava-1.7/tests/org/biojava/naming/ObdaInitialContextFactoryTest.java
biojava-1.7/tests/org/biojava/naming/ObdaUriParserTest.java: Could not stat biojava-1.7/tests/org/biojava/naming/ObdaUriParserTest.java
biojava-1.7/tests/org/biojava/ontology/: Could not stat biojava-1.7/tests/org/biojava/ontology
biojava-1.7/tests/org/biojava/ontology/OntologyTest.java: Could not stat biojava-1.7/tests/org/biojava/ontology/OntologyTest.java
biojava-1.7/tests/org/biojava/ontology/ParseOBOFileTest.java: Could not stat biojava-1.7/tests/org/biojava/ontology/ParseOBOFileTest.java
biojava-1.7/tests/org/biojava/ontology/TermImplTest.java: Could not stat biojava-1.7/tests/org/biojava/ontology/TermImplTest.java
biojava-1.7/tests/org/biojava/ontology/TripleImplTest.java: Could not stat biojava-1.7/tests/org/biojava/ontology/TripleImplTest.java
biojava-1.7/tests/org/biojava/utils/: Could not stat biojava-1.7/tests/org/biojava/utils
biojava-1.7/tests/org/biojava/utils/automata/: Could not stat biojava-1.7/tests/org/biojava/utils/automata
biojava-1.7/tests/org/biojava/utils/automata/NfaTest.java: Could not stat biojava-1.7/tests/org/biojava/utils/automata/NfaTest.java
biojava-1.7/tests/org/biojava/utils/ListToolsTest.java: Could not stat biojava-1.7/tests/org/biojava/utils/ListToolsTest.java
biojava-1.7/tests/org/biojava/utils/lsid/: Could not stat biojava-1.7/tests/org/biojava/utils/lsid
biojava-1.7/tests/org/biojava/utils/lsid/LifeScienceIdentifierTest.java: Could not stat biojava-1.7/tests/org/biojava/utils/lsid/LifeScienceIdentifierTest.java
biojava-1.7/tests/org/biojava/utils/process/: Could not stat biojava-1.7/tests/org/biojava/utils/process
biojava-1.7/tests/org/biojava/utils/process/AllTests.java: Could not stat biojava-1.7/tests/org/biojava/utils/process/AllTests.java
biojava-1.7/tests/org/biojava/utils/process/ExternalProcessTest.java: Could not stat biojava-1.7/tests/org/biojava/utils/process/ExternalProcessTest.java
biojava-1.7/tests/org/biojava/utils/regex/: Could not stat biojava-1.7/tests/org/biojava/utils/regex
biojava-1.7/tests/org/biojava/utils/regex/PatternCheckerTest.java: Could not stat biojava-1.7/tests/org/biojava/utils/regex/PatternCheckerTest.java
biojava-1.7/tests/org/biojava/utils/regex/RegexTest.java: Could not stat biojava-1.7/tests/org/biojava/utils/regex/RegexTest.java
biojava-1.7/tests/org/biojava/utils/RepeatedCharSequenceTest.java: Could not stat biojava-1.7/tests/org/biojava/utils/RepeatedCharSequenceTest.java
biojava-1.7/tests/org/biojava/utils/SmallMapTest.java: Could not stat biojava-1.7/tests/org/biojava/utils/SmallMapTest.java
biojava-1.7/tests/org/biojava/utils/walker/: Could not stat biojava-1.7/tests/org/biojava/utils/walker
biojava-1.7/tests/org/biojava/utils/walker/WalkerFactoryTest.java: Could not stat biojava-1.7/tests/org/biojava/utils/walker/WalkerFactoryTest.java
biojava-1.7/tests/org/biojava/utils/walker/WalkerTest.java: Could not stat biojava-1.7/tests/org/biojava/utils/walker/WalkerTest.java
biojava-1.7/tests/org/biojavax/: Could not stat biojava-1.7/tests/org/biojavax
biojava-1.7/tests/org/biojavax/bio/: Could not stat biojava-1.7/tests/org/biojavax/bio
biojava-1.7/tests/org/biojavax/bio/seq/: Could not stat biojava-1.7/tests/org/biojavax/bio/seq
biojava-1.7/tests/org/biojavax/bio/seq/CompoundRichLocationTest.java: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/CompoundRichLocationTest.java
biojava-1.7/tests/org/biojavax/bio/seq/io/: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/io
biojava-1.7/tests/org/biojavax/bio/seq/io/Bug2249_2248Test.java: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/io/Bug2249_2248Test.java
biojava-1.7/tests/org/biojavax/bio/seq/io/Bug2250_2256Test.java: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/io/Bug2250_2256Test.java
biojava-1.7/tests/org/biojavax/bio/seq/io/Bug2255Test.java: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/io/Bug2255Test.java
biojava-1.7/tests/org/biojavax/bio/seq/io/EMBLFormatTest.java: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/io/EMBLFormatTest.java
biojava-1.7/tests/org/biojavax/bio/seq/io/GenbankFormatTest.java: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/io/GenbankFormatTest.java
biojava-1.7/tests/org/biojavax/bio/seq/io/INSDseqFormatTest.java: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/io/INSDseqFormatTest.java
biojava-1.7/tests/org/biojavax/bio/seq/io/UniProtFormatTest.java: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/io/UniProtFormatTest.java
biojava-1.7/tests/org/biojavax/bio/seq/MultiSourceCompoundRichLocationTest.java: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/MultiSourceCompoundRichLocationTest.java
biojava-1.7/tests/org/biojavax/bio/seq/SimpleRichFeatureTest.java: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/SimpleRichFeatureTest.java
biojava-1.7/tests/org/biojavax/bio/seq/SimpleRichLocationTest.java: Could not stat biojava-1.7/tests/org/biojavax/bio/seq/SimpleRichLocationTest.java
biojava-1.7/tests/org/biojavax/bio/SimpleBioEntryTest.java: Could not stat biojava-1.7/tests/org/biojavax/bio/SimpleBioEntryTest.java
biojava-1.7/tests/org/biojavax/bio/taxa/: Could not stat biojava-1.7/tests/org/biojavax/bio/taxa
biojava-1.7/tests/org/biojavax/bio/taxa/SimpleNCBITaxonNameTest.java: Could not stat biojava-1.7/tests/org/biojavax/bio/taxa/SimpleNCBITaxonNameTest.java
biojava-1.7/tests/org/biojavax/CrossReferenceResolutionExceptionTest.java: Could not stat biojava-1.7/tests/org/biojavax/CrossReferenceResolutionExceptionTest.java
biojava-1.7/tests/org/biojavax/DummyCrossReferenceResolverTest.java: Could not stat biojava-1.7/tests/org/biojavax/DummyCrossReferenceResolverTest.java
biojava-1.7/tests/org/biojavax/EmptyRichAnnotationTest.java: Could not stat biojava-1.7/tests/org/biojavax/EmptyRichAnnotationTest.java
biojava-1.7/tests/org/biojavax/ga/: Could not stat biojava-1.7/tests/org/biojavax/ga
biojava-1.7/tests/org/biojavax/ga/functions/: Could not stat biojava-1.7/tests/org/biojavax/ga/functions
biojava-1.7/tests/org/biojavax/ga/functions/AbstractCrossOverFunctionTest.java: Could not stat biojava-1.7/tests/org/biojavax/ga/functions/AbstractCrossOverFunctionTest.java
biojava-1.7/tests/org/biojavax/ga/functions/AbstractMutationFunctionTest.java: Could not stat biojava-1.7/tests/org/biojavax/ga/functions/AbstractMutationFunctionTest.java
biojava-1.7/tests/org/biojavax/ga/functions/ProportionalSelectionTest.java: Could not stat biojava-1.7/tests/org/biojavax/ga/functions/ProportionalSelectionTest.java
biojava-1.7/tests/org/biojavax/ga/functions/SimpleCrossOverFunctionTest.java: Could not stat biojava-1.7/tests/org/biojavax/ga/functions/SimpleCrossOverFunctionTest.java
biojava-1.7/tests/org/biojavax/ga/functions/SimpleMutationFunctionTest.java: Could not stat biojava-1.7/tests/org/biojavax/ga/functions/SimpleMutationFunctionTest.java
biojava-1.7/tests/org/biojavax/ga/impl/: Could not stat biojava-1.7/tests/org/biojavax/ga/impl
biojava-1.7/tests/org/biojavax/ga/impl/SimpleOrganismTest.java: Could not stat biojava-1.7/tests/org/biojavax/ga/impl/SimpleOrganismTest.java
biojava-1.7/tests/org/biojavax/ga/impl/SimplePopulationTest.java: Could not stat biojava-1.7/tests/org/biojavax/ga/impl/SimplePopulationTest.java
biojava-1.7/tests/org/biojavax/ga/util/: Could not stat biojava-1.7/tests/org/biojavax/ga/util
biojava-1.7/tests/org/biojavax/ga/util/GAToolsTest.java: Could not stat biojava-1.7/tests/org/biojavax/ga/util/GAToolsTest.java
biojava-1.7/tests/org/biojavax/ga/util/WeightedSetTest.java: Could not stat biojava-1.7/tests/org/biojavax/ga/util/WeightedSetTest.java
biojava-1.7/tests/org/biojavax/ontology/: Could not stat biojava-1.7/tests/org/biojavax/ontology
biojava-1.7/tests/org/biojavax/ontology/SimpleComparableOntologyTest.java: Could not stat biojava-1.7/tests/org/biojavax/ontology/SimpleComparableOntologyTest.java
biojava-1.7/tests/org/biojavax/ontology/SimpleComparableTermTest.java: Could not stat biojava-1.7/tests/org/biojavax/ontology/SimpleComparableTermTest.java
biojava-1.7/tests/org/biojavax/ontology/SimpleComparableTripleTest.java: Could not stat biojava-1.7/tests/org/biojavax/ontology/SimpleComparableTripleTest.java
biojava-1.7/tests/org/biojavax/SimpleCommentTest.java: Could not stat biojava-1.7/tests/org/biojavax/SimpleCommentTest.java
biojava-1.7/tests/org/biojavax/SimpleCrossRefTest.java: Could not stat biojava-1.7/tests/org/biojavax/SimpleCrossRefTest.java
biojava-1.7/tests/org/biojavax/SimpleDocRefAuthorTest.java: Could not stat biojava-1.7/tests/org/biojavax/SimpleDocRefAuthorTest.java
biojava-1.7/tests/org/biojavax/SimpleDocRefTest.java: Could not stat biojava-1.7/tests/org/biojavax/SimpleDocRefTest.java
biojava-1.7/tests/org/biojavax/SimpleNamespaceTest.java: Could not stat biojava-1.7/tests/org/biojavax/SimpleNamespaceTest.java
biojava-1.7/tests/org/biojavax/SimpleNoteTest.java: Could not stat biojava-1.7/tests/org/biojavax/SimpleNoteTest.java
biojava-1.7/tests/org/biojavax/SimpleRankedCrossRefTest.java: Could not stat biojava-1.7/tests/org/biojavax/SimpleRankedCrossRefTest.java
biojava-1.7/tests/org/biojavax/SimpleRankedDocRefTest.java: Could not stat biojava-1.7/tests/org/biojavax/SimpleRankedDocRefTest.java
biojava-1.7/tests/org/biojavax/SimpleRichAnnotationTest.java: Could not stat biojava-1.7/tests/org/biojavax/SimpleRichAnnotationTest.java
tar: Error exit delayed from previous errors.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/biojava

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