[package - head-mips-default][biology/avida] Failed for avida-2.12.4 in build

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Sun Apr 24 17:56:22 UTC 2016 

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     ports at FreeBSD.org
Last committer: swills at FreeBSD.org
Ident:          $FreeBSD: head/biology/avida/Makefile 403676 2015-12-13 16:07:27Z swills $
Log URL:        http://beefy7.nyi.freebsd.org/data/head-mips-default/p413605_s298221/logs/avida-2.12.4.log
Build URL:      http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p413605_s298221
Log:

====>> Building biology/avida
build started at Sun Apr 24 17:47:22 UTC 2016
port directory: /usr/ports/biology/avida
building for: FreeBSD head-mips-default-job-05 11.0-CURRENT FreeBSD 11.0-CURRENT r298221 mips
maintained by: ports at FreeBSD.org
Makefile ident:      $FreeBSD: head/biology/avida/Makefile 403676 2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.12
Host OSVERSION: 1100102
Jail OSVERSION: 1100105




!!! Jail is newer than host. (Jail: 1100105, Host: 1100102) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=mips
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
UNAME_v=FreeBSD 11.0-CURRENT r298221
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=mips
LINUX_OSRELEASE=2.6.32
SAVED_TERM=screen
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=avida-2.12.4
OSREL=11.0
_OSRELEASE=11.0-CURRENT
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool
MASTERNAME=head-mips-default
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.12
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100105
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for avida-2.12.4:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/avida/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/avida/work  HOME=/wrkdirs/usr/ports/biology/avida/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/avida/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/avida/work  HOME=/wrkdirs/usr/ports/biology/avida/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0  -fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS=" -Wl,-rpath=/usr/lib:/usr/local/lib" LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/avida"
EXAMPLESDIR="share/examples/avida"
DATADIR="share/avida"
WWWDIR="www/avida"
ETCDIR="etc/avida"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/avida
DOCSDIR=/usr/local/share/doc/avida
EXAMPLESDIR=/usr/local/share/examples/avida
WWWDIR=/usr/local/www/avida
ETCDIR=/usr/local/etc/avida
--End SUB_LIST--

---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
<snip>
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by avida-2.12.4 for building
=> SHA256 Checksum OK for avida-2.12.4-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>   NOTICE:

The avida port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by avida-2.12.4 for building
===>  Extracting for avida-2.12.4
=> SHA256 Checksum OK for avida-2.12.4-src.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for avida-2.12.4
===>  Applying FreeBSD patches for avida-2.12.4
===========================================================================
=======================<phase: build-depends  >============================
===>   avida-2.12.4 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-3.5.2.txz
[head-mips-default-job-05] Installing cmake-3.5.2...
[head-mips-default-job-05] `-- Installing expat-2.1.0_3...
[head-mips-default-job-05] `-- Extracting expat-2.1.0_3: .......... done
[head-mips-default-job-05] `-- Installing cmake-modules-3.5.2...
[head-mips-default-job-05] `-- Extracting cmake-modules-3.5.2: .......... done
[head-mips-default-job-05] `-- Installing curl-7.48.0_2...
[head-mips-default-job-05] |   `-- Installing ca_root_nss-3.22.2...
[head-mips-default-job-05] |   `-- Extracting ca_root_nss-3.22.2: ....... done
[head-mips-default-job-05] `-- Extracting curl-7.48.0_2: .......... done
[head-mips-default-job-05] `-- Installing libarchive-3.1.2_6,1...
[head-mips-default-job-05] |   `-- Installing lzo2-2.09...
[head-mips-default-job-05] |   `-- Extracting lzo2-2.09: .......... done
[head-mips-default-job-05] `-- Extracting libarchive-3.1.2_6,1: .......... done
[head-mips-default-job-05] `-- Installing jsoncpp-0.6.0.r2_2...
[head-mips-default-job-05] `-- Extracting jsoncpp-0.6.0.r2_2: .......... done
[head-mips-default-job-05] Extracting cmake-3.5.2: .......... done
Message from ca_root_nss-3.22.2:
********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
===>   avida-2.12.4 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of avida-2.12.4
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for avida-2.12.4
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/avida/work/.build
-- The C compiler identification is GNU 4.2.1
-- The CXX compiler identification is GNU 4.2.1
-- Check for working C compiler: /nxb-bin/usr/bin/cc
-- Check for working C compiler: /nxb-bin/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test HAVE_FUSED_MADD
-- Performing Test HAVE_FUSED_MADD - Success
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_C_FLAGS_DEBUG
    CMAKE_C_FLAGS_RELEASE
    CMAKE_MODULE_LINKER_FLAGS
    THREADS_HAVE_PTHREAD_ARG


-- Build files have been written to: /wrkdirs/usr/ports/biology/avida/work/.build
===========================================================================
=======================<phase: build          >============================
===>  Building for avida-2.12.4
/usr/local/bin/cmake -H/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src -B/wrkdirs/usr/ports/biology/avida/work/.build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles/progress.marks
/nxb-bin/usr/bin/make -f CMakeFiles/Makefile2 all
/nxb-bin/usr/bin/make -f libs/apto/src/CMakeFiles/aptoshared.dir/build.make libs/apto/src/CMakeFiles/aptoshared.dir/depend
cd /wrkdirs/usr/ports/biology/avida/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src /wrkdirs/usr/ports/biology/avida/work/.build /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src/CMakeFiles/aptoshared.dir/DependInfo.cmake
Scanning dependencies of target aptoshared
/nxb-bin/usr/bin/make -f libs/apto/src/CMakeFiles/aptoshared.dir/build.make libs/apto/src/CMakeFiles/aptoshared.dir/build
[  0%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++   -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/core/FileSystem.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc
[  1%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++   -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/core/RefCount.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/RefCount.cc
[  1%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/Thread.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++   -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/core/Thread.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/Thread.cc
[  2%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/platform/Platform.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++   -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/platform/Platform.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/platform/Platform.cc
[  2%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++   -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/ContingencyTable.cc
[  3%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++   -Daptoshared_EXPORTS -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc
[  3%] Linking CXX shared library ../../../lib/libapto.so
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/aptoshared.dir/link.txt --verbose=1
/nxb-bin/usr/bin/c++  -fPIC -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG  -Wl,-rpath=/usr/lib:/usr/local/lib -shared -Wl,-soname,libapto.so -o ../../../lib/libapto.so CMakeFiles/aptoshared.dir/core/FileSystem.cc.o CMakeFiles/aptoshared.dir/core/RefCount.cc.o CMakeFiles/aptoshared.dir/core/Thread.cc.o CMakeFiles/aptoshared.dir/platform/Platform.cc.o CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -pthread -pthread 
[  3%] Built target aptoshared
/nxb-bin/usr/bin/make -f libs/apto/src/CMakeFiles/aptostatic.dir/build.make libs/apto/src/CMakeFiles/aptostatic.dir/depend
cd /wrkdirs/usr/ports/biology/avida/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src /wrkdirs/usr/ports/biology/avida/work/.build /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src/CMakeFiles/aptostatic.dir/DependInfo.cmake
Scanning dependencies of target aptostatic
/nxb-bin/usr/bin/make -f libs/apto/src/CMakeFiles/aptostatic.dir/build.make libs/apto/src/CMakeFiles/aptostatic.dir/build
[  4%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/core/FileSystem.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++    -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/core/FileSystem.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc
[  4%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/core/RefCount.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++    -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/core/RefCount.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/RefCount.cc
[  5%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/core/Thread.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++    -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/core/Thread.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/Thread.cc
[  6%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/platform/Platform.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++    -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/platform/Platform.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/platform/Platform.cc
[  6%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++    -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/ContingencyTable.cc
[  7%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /nxb-bin/usr/bin/c++    -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc
[  7%] Linking CXX static library ../../../lib/libapto.a
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/local/bin/cmake -P CMakeFiles/aptostatic.dir/cmake_clean_target.cmake
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/aptostatic.dir/link.txt --verbose=1
/nxb-bin/usr/bin/ar qc ../../../lib/libapto.a  CMakeFiles/aptostatic.dir/core/FileSystem.cc.o CMakeFiles/aptostatic.dir/core/RefCount.cc.o CMakeFiles/aptostatic.dir/core/Thread.cc.o CMakeFiles/aptostatic.dir/platform/Platform.cc.o CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o
/nxb-bin/usr/bin/ranlib ../../../lib/libapto.a
[  7%] Built target aptostatic
/nxb-bin/usr/bin/make -f libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build.make libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/depend
cd /wrkdirs/usr/ports/biology/avida/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4 /wrkdirs/usr/ports/biology/avida/work/.build /wrkdirs/usr/ports/biology/avida/work/.build/libs/tcmalloc-1.4 /wrkdirs/usr/ports/biology/avida/work/.build/libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/DependInfo.cmake
Scanning dependencies of target tcmalloc-1.4
/nxb-bin/usr/bin/make -f libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build.make libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build
[  7%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/tcmalloc-1.4 && /nxb-bin/usr/bin/c++    -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.cc
[  8%] Building CXX object libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/tcmalloc-1.4 && /nxb-bin/usr/bin/c++    -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src -O2 -pipe -G0 -fno-strict-aliasing  -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -o CMakeFiles/tcmalloc-1.4.dir/src/central_freelist.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/central_freelist.cc
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h: In member function 'void tcmalloc::CentralFreeList::Populate()':
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:100: error: impossible constraint in 'asm'
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:100: error: impossible constraint in 'asm'
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:100: error: impossible constraint in 'asm'
{standard input}: Assembler messages:
{standard input}:190: Error: unrecognized opcode `lfence'
{standard input}:459: Error: unrecognized opcode `lfence'
{standard input}:485: Error: unrecognized opcode `lfence'
*** Error code 1

Stop.
make[3]: stopped in /wrkdirs/usr/ports/biology/avida/work/.build
*** Error code 1

Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/avida/work/.build
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/avida/work/.build
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/avida

More information about the freebsd-pkg-fallout mailing list