[package - head-amd64-default][biology/py-biopython] Failed for py27-biopython-1.66 in fetch

Fri Apr 22 07:57:21 UTC 2016

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     mauricio at arareko.net
Last committer: wen at FreeBSD.org
Ident:          $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $
Log URL:        http://beefy4.nyi.freebsd.org/data/head-amd64-default/p413709_s298385/logs/py27-biopython-1.66.log
Build URL:      http://beefy4.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p413709_s298385
Log:

====>> Building biology/py-biopython
build started at Fri Apr 22 07:57:18 UTC 2016
port directory: /usr/ports/biology/py-biopython
building for: FreeBSD head-amd64-default-job-12 11.0-CURRENT FreeBSD 11.0-CURRENT r298385 amd64
maintained by: mauricio at arareko.net
Makefile ident:      $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $
Poudriere version: 3.1.12
Host OSVERSION: 1100102
Jail OSVERSION: 1100105

!!! Jail is newer than host. (Jail: 1100105, Host: 1100102) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!

---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-CURRENT r298385
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=amd64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=py27-biopython-1.66
OSREL=11.0
_OSRELEASE=11.0-CURRENT
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool
HAVE_COMPAT_IA32_KERN=YES LINUX_OSRELEASE=2.6.32
MASTERNAME=head-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.12
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100105
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for py27-biopython-1.66:
     REPORTLAB=on: PDF support in Bio.Graphics module
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work  HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work  HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python2.7
PYTHON_LIBDIR=lib/python2.7
PYTHON_PLATFORM=freebsd11
PYTHON_SITELIBDIR=lib/python2.7/site-packages
PYTHON_VER=2.7
PYTHON_VERSION=python2.7
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/biopython"
EXAMPLESDIR="share/examples/biopython"
DATADIR="share/biopython"
WWWDIR="www/biopython"
ETCDIR="etc/biopython"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/biopython
DOCSDIR=/usr/local/share/doc/biopython
EXAMPLESDIR=/usr/local/share/examples/biopython
WWWDIR=/usr/local/www/biopython
ETCDIR=/usr/local/etc/biopython
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.7.2.txz
[head-amd64-default-job-12] Installing pkg-1.7.2...
[head-amd64-default-job-12] Extracting pkg-1.7.2: .......... done
===>   py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py27-biopython-1.66
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
=> biopython-1.66.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch http://www.biopython.org/DIST/biopython-1.66.tar.gz
fetch: http://www.biopython.org/DIST/biopython-1.66.tar.gz: Not Found
=> Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/biopython-1.66.tar.gz
fetch: http://distcache.FreeBSD.org/ports-distfiles/biopython-1.66.tar.gz: Not Found
=> Couldn't fetch it - please try to retrieve this
=> port manually into /portdistfiles/ and try again.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/py-biopython