[package - 101amd64-default][math/matio] Failed for matio-1.5.2_6 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Apr 21 01:24:48 UTC 2016
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: makc at FreeBSD.org
Last committer: sunpoet at FreeBSD.org
Ident: $FreeBSD: head/math/matio/Makefile 413700 2016-04-20 20:42:39Z sunpoet $
Log URL: http://beefy6.nyi.freebsd.org/data/101amd64-default/413709/logs/matio-1.5.2_6.log
Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=101amd64-default&build=413709
Log:
====>> Building math/matio
build started at Thu Apr 21 01:24:29 UTC 2016
port directory: /usr/ports/math/matio
building for: FreeBSD 101amd64-default-job-15 10.1-RELEASE-p31 FreeBSD 10.1-RELEASE-p31 amd64
maintained by: makc at FreeBSD.org
Makefile ident: $FreeBSD: head/math/matio/Makefile 413700 2016-04-20 20:42:39Z sunpoet $
Poudriere version: 3.1.12
Host OSVERSION: 1100102
Jail OSVERSION: 1001000
---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 10.1-RELEASE-p31
UNAME_r=10.1-RELEASE-p31
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=amd64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/101amd64-default/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=matio-1.5.2_6
OSREL=10.1
_OSRELEASE=10.1-RELEASE-p31
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/101amd64-default/ref/.p/pool
HAVE_COMPAT_IA32_KERN=YES LINUX_OSRELEASE=2.6.32
MASTERNAME=101amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.12
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1001000
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for matio-1.5.2_6:
HDF5=on: Support for MAT file version 7.3
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--enable-mat73=yes --with-hdf5=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/math/matio/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/matio/work HOME=/wrkdirs/usr/ports/math/matio/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/math/matio/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/matio/work HOME=/wrkdirs/usr/ports/math/matio/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=10.1
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/matio"
EXAMPLESDIR="share/examples/matio"
DATADIR="share/matio"
WWWDIR="www/matio"
ETCDIR="etc/matio"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/matio
DOCSDIR=/usr/local/share/doc/matio
EXAMPLESDIR=/usr/local/share/examples/matio
WWWDIR=/usr/local/www/matio
ETCDIR=/usr/local/etc/matio
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> matio-1.5.2_6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.7.2.txz
[101amd64-default-job-15] Installing pkg-1.7.2...
[101amd64-default-job-15] Extracting pkg-1.7.2: .......... done
===> matio-1.5.2_6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of matio-1.5.2_6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by matio-1.5.2_6 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by matio-1.5.2_6 for building
=> SHA256 Checksum OK for matio-1.5.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by matio-1.5.2_6 for building
===> Extracting for matio-1.5.2_6
=> SHA256 Checksum OK for matio-1.5.2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for matio-1.5.2_6
===========================================================================
=======================<phase: build-depends >============================
===========================================================================
=======================<phase: lib-depends >============================
===> matio-1.5.2_6 depends on shared library: libhdf5.so - not found
===> Installing existing package /packages/All/hdf5-1.10.0.txz
[101amd64-default-job-15] Installing hdf5-1.10.0...
[101amd64-default-job-15] `-- Installing hdf-szip-2.1_2...
[101amd64-default-job-15] `-- Extracting hdf-szip-2.1_2: ........ done
[101amd64-default-job-15] Extracting hdf5-1.10.0: .......... done
===> matio-1.5.2_6 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===> Returning to build of matio-1.5.2_6
===========================================================================
=======================<phase: configure >============================
===> Configuring for matio-1.5.2_6
configure: loading site script /usr/ports/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... amd64-portbld-freebsd10.1
checking host system type... amd64-portbld-freebsd10.1
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking debug mode... no
checking profile mode... no
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... (cached) /usr/bin/fgrep
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... no
checking how to convert amd64-portbld-freebsd10.1 file names to amd64-portbld-freebsd10.1 format... func_convert_file_noop
checking how to convert amd64-portbld-freebsd10.1 file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... cpp
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... yes
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... freebsd10.1 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make sets $(MAKE)... (cached) yes
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for pow in -lm... yes
checking for ANSI C header files... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for getopt_long... internal
checking size of double... 8
checking size of float... 4
checking size of long long... 8
checking size of long... 8
checking size of int... 4
checking size of short... 2
checking size of char... 1
checking size of void *... 8
checking size of size_t... 8
checking for mat_int64_t... int64_t
checking for mat_uint64_t... uint64_t
checking for mat_int32_t... int32_t
checking for mat_uint32_t... uint32_t
checking for mat_int16_t... int16_t
checking for mat_uint16_t... uint16_t
checking for mat_int8_t... int8_t
checking for mat_uint8_t... uint8_t
checking for va_copy()... yes
checking for vsnprintf()... yes
checking for snprintf()... yes
checking for vasprintf()... yes
checking for asprintf()... yes
checking for matlab... no
no
checking for zlib Library... -lz
checking for HDF5 software... -L/usr/local/lib -lhdf5
checking if HDF5 interface is v1.8... yes
checking enable enable MAT v7.3 file support... yes
checking for default MAT file version... MAT_FT_MAT5
checking enable extended sparse types... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating matio.pc
config.status: creating src/Makefile
config.status: creating getopt/Makefile
config.status: creating tools/Makefile
config.status: creating test/Makefile
config.status: creating documentation/Makefile
config.status: creating src/matioConfig.h
config.status: creating src/matio_pubconf.h
config.status: executing libtool commands
config.status: executing test/atconfig commands
MATIO Configuration Summary
==============================================================
C Compiler: cc
CFLAGS: -O2 -pipe -fstack-protector -fno-strict-aliasing
Shared Libraries: yes
Static Libraries: yes
default MAT version: MAT_FT_MAT5
Features --------------------------------------------
MAT v7.3 file support: yes
Extended sparse support: yes
Packages --------------------------------------------
zlib: -lz
hdf5: -L/usr/local/lib -lhdf5
MATLAB:
===========================================================================
=======================<phase: build >============================
===> Building for matio-1.5.2_6
Making all in src
/usr/bin/make all-am
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o snprintf.lo snprintf.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c snprintf.c -fPIC -DPIC -o .libs/snprintf.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c snprintf.c -o snprintf.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o endian.lo endian.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c endian.c -fPIC -DPIC -o .libs/endian.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c endian.c -o endian.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o io.lo io.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c io.c -fPIC -DPIC -o .libs/io.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c io.c -o io.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o inflate.lo inflate.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c inflate.c -fPIC -DPIC -o .libs/inflate.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c inflate.c -o inflate.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o read_data.lo read_data.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c read_data.c -fPIC -DPIC -o .libs/read_data.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c read_data.c -o read_data.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o mat5.lo mat5.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat5.c -fPIC -DPIC -o .libs/mat5.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat5.c -o mat5.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o mat4.lo mat4.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat4.c -fPIC -DPIC -o .libs/mat4.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat4.c -o mat4.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o mat.lo mat.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat.c -fPIC -DPIC -o .libs/mat.o
mat.c:83:27: warning: format specifies type 'long long' but the argument has type 'mat_int64_t' (aka 'long') [-Wformat]
printf("%lld",*(mat_int64_t*)data);
~~~~ ^~~~~~~~~~~~~~~~~~~
%ld
mat.c:88:27: warning: format specifies type 'unsigned long long' but the argument has type 'mat_uint64_t' (aka 'unsigned long') [-Wformat]
printf("%llu",*(mat_uint64_t*)data);
~~~~ ^~~~~~~~~~~~~~~~~~~~
%lu
2 warnings generated.
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat.c -o mat.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o matvar_cell.lo matvar_cell.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c matvar_cell.c -fPIC -DPIC -o .libs/matvar_cell.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c matvar_cell.c -o matvar_cell.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o matvar_struct.lo matvar_struct.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c matvar_struct.c -fPIC -DPIC -o .libs/matvar_struct.o
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c matvar_struct.c -o matvar_struct.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c -o mat73.lo mat73.c
libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I/usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -c mat73.c -fPIC -DPIC -o .libs/mat73.o
mat73.c:599:69: error: too few arguments to function call, expected 4, have 3
ref_id = H5Rdereference(dset_id,H5R_OBJECT,ref_ids+i);
~~~~~~~~~~~~~~ ^
/usr/local/include/H5Rpublic.h:63:8: note: 'H5Rdereference2' declared here
H5_DLL hid_t H5Rdereference2(hid_t obj_id, hid_t oapl_id, H5R_type_t ref_type, const void *ref);
^
mat73.c:904:58: error: too few arguments to function call, expected 4, have 3
ref_ids+l);
^
/usr/local/include/H5Rpublic.h:63:8: note: 'H5Rdereference2' declared here
H5_DLL hid_t H5Rdereference2(hid_t obj_id, hid_t oapl_id, H5R_type_t ref_type, const void *ref);
^
mat73.c:1033:73: error: too few arguments to function call, expected 4, have 3
ref_id = H5Rdereference(dset_id,H5R_OBJECT,ref_ids+i);
~~~~~~~~~~~~~~ ^
/usr/local/include/H5Rpublic.h:63:8: note: 'H5Rdereference2' declared here
H5_DLL hid_t H5Rdereference2(hid_t obj_id, hid_t oapl_id, H5R_type_t ref_type, const void *ref);
^
mat73.c:2788:77: error: too few arguments to function call, expected 4, have 3
ref_id = H5Rdereference(dset_id,H5R_OBJECT,ref_ids+i);
~~~~~~~~~~~~~~ ^
/usr/local/include/H5Rpublic.h:63:8: note: 'H5Rdereference2' declared here
H5_DLL hid_t H5Rdereference2(hid_t obj_id, hid_t oapl_id, H5R_type_t ref_type, const void *ref);
^
4 errors generated.
*** Error code 1
Stop.
make[3]: stopped in /wrkdirs/usr/ports/math/matio/work/matio-1.5.2/src
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/math/matio/work/matio-1.5.2/src
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/math/matio/work/matio-1.5.2
*** Error code 1
Stop.
make: stopped in /usr/ports/math/matio
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