[package - 93amd64-quarterly][biology/seqtools] Failed for seqtools-4.41.1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Apr 19 01:57:14 UTC 2016
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: pi at FreeBSD.org
Last committer: mat at FreeBSD.org
Ident: $FreeBSD: branches/2016Q2/biology/seqtools/Makefile 412344 2016-04-01 13:29:15Z mat $
Log URL: http://beefy4.nyi.freebsd.org/data/93amd64-quarterly/413618/logs/seqtools-4.41.1.log
Build URL: http://beefy4.nyi.freebsd.org/build.html?mastername=93amd64-quarterly&build=413618
Log:
====>> Building biology/seqtools
build started at Tue Apr 19 01:56:14 UTC 2016
port directory: /usr/ports/biology/seqtools
building for: FreeBSD 93amd64-quarterly-job-08 9.3-RELEASE-p39 FreeBSD 9.3-RELEASE-p39 amd64
maintained by: pi at FreeBSD.org
Makefile ident: $FreeBSD: branches/2016Q2/biology/seqtools/Makefile 412344 2016-04-01 13:29:15Z mat $
Poudriere version: 3.1.12
Host OSVERSION: 1100102
Jail OSVERSION: 903000
---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 9.3-RELEASE-p39
UNAME_r=9.3-RELEASE-p39
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/93amd64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqtools-4.41.1
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/93amd64-quarterly/ref/.p/pool
MASTERNAME=93amd64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.12
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
OSVERSION=903000
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for seqtools-4.41.1:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqtools/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqtools/work HOME=/wrkdirs/usr/ports/biology/seqtools/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqtools/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqtools/work HOME=/wrkdirs/usr/ports/biology/seqtools/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc" CFLAGS="-O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing" CPP="gcpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib -lexecinfo -lcurl -lsqlite3 -lm -fstack-protector" LIBS="" CXX="g++" CXXFLAGS="-O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
OSREL=9.3
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqtools"
EXAMPLESDIR="share/examples/seqtools"
DATADIR="share/seqtools"
WWWDIR="www/seqtools"
ETCDIR="etc/seqtools"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqtools
DOCSDIR=/usr/local/share/doc/seqtools
EXAMPLESDIR=/usr/local/share/examples/seqtools
WWWDIR=/usr/local/www/seqtools
ETCDIR=/usr/local/etc/seqtools
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> seqtools-4.41.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.7.2.txz
[93amd64-quarterly-job-08] Installing pkg-1.7.2...
[93amd64-quarterly-job-08] Extracting pkg-1.7.2: .......... done
===> seqtools-4.41.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of seqtools-4.41.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by seqtools-4.41.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by seqtools-4.41.1 for building
=> SHA256 Checksum OK for seqtools-4.41.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by seqtools-4.41.1 for building
===> Extracting for seqtools-4.41.1
=> SHA256 Checksum OK for seqtools-4.41.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for seqtools-4.41.1
===========================================================================
=======================<phase: build-depends >============================
===> seqtools-4.41.1 depends on executable: pkgconf - not found
===> Installing existing package /packages/All/pkgconf-0.9.12_1.txz
[93amd64-quarterly-job-08] Installing pkgconf-0.9.12_1...
[93amd64-quarterly-job-08] Extracting pkgconf-0.9.12_1: ....... done
===> seqtools-4.41.1 depends on executable: pkgconf - found
===> Returning to build of seqtools-4.41.1
===========================================================================
=======================<phase: lib-depends >============================
===> seqtools-4.41.1 depends on shared library: libcurl.so - not found
===> Installing existing package /packages/All/curl-7.48.0_1.txz
[93amd64-quarterly-job-08] Installing curl-7.48.0_1...
[93amd64-quarterly-job-08] `-- Installing ca_root_nss-3.22.2...
[93amd64-quarterly-job-08] `-- Extracting ca_root_nss-3.22.2: ....... done
[93amd64-quarterly-job-08] Extracting curl-7.48.0_1: .......... done
Message from ca_root_nss-3.22.2:
********************************* WARNING *********************************
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
system administrator.
*********************************** NOTE **********************************
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
***************************************************************************
===> seqtools-4.41.1 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so)
===> Returning to build of seqtools-4.41.1
===> seqtools-4.41.1 depends on shared library: libsqlite3.so - not found
===> Installing existing package /packages/All/sqlite3-3.11.1.txz
[93amd64-quarterly-job-08] Installing sqlite3-3.11.1...
[93amd64-quarterly-job-08] Extracting sqlite3-3.11.1: .......... done
===> seqtools-4.41.1 depends on shared library: libsqlite3.so - found (/usr/local/lib/libsqlite3.so)
===> Returning to build of seqtools-4.41.1
===> seqtools-4.41.1 depends on shared library: libexecinfo.so - not found
===> Installing existing package /packages/All/libexecinfo-1.1_3.txz
[93amd64-quarterly-job-08] Installing libexecinfo-1.1_3...
[93amd64-quarterly-job-08] Extracting libexecinfo-1.1_3: ..... done
===> seqtools-4.41.1 depends on shared library: libexecinfo.so - found (/usr/local/lib/libexecinfo.so)
===> Returning to build of seqtools-4.41.1
===> seqtools-4.41.1 depends on shared library: libatk-1.0.so - not found
===> Installing existing package /packages/All/atk-2.18.0.txz
[93amd64-quarterly-job-08] Installing atk-2.18.0...
[93amd64-quarterly-job-08] `-- Installing gettext-runtime-0.19.7...
[93amd64-quarterly-job-08] | `-- Installing indexinfo-0.2.4...
[93amd64-quarterly-job-08] | `-- Extracting indexinfo-0.2.4: .... done
[93amd64-quarterly-job-08] | `-- Installing libiconv-1.14_9...
[93amd64-quarterly-job-08] | `-- Extracting libiconv-1.14_9: .......... done
[93amd64-quarterly-job-08] `-- Extracting gettext-runtime-0.19.7: .......... done
[93amd64-quarterly-job-08] `-- Installing glib-2.46.2...
[93amd64-quarterly-job-08] | `-- Installing python27-2.7.11_1...
[93amd64-quarterly-job-08] | | `-- Installing libffi-3.2.1...
[93amd64-quarterly-job-08] | | `-- Extracting libffi-3.2.1: .......... done
[93amd64-quarterly-job-08] | `-- Extracting python27-2.7.11_1: .......... done
[93amd64-quarterly-job-08] | `-- Installing pcre-8.38_1...
[93amd64-quarterly-job-08] | `-- Extracting pcre-8.38_1: .......... done
[93amd64-quarterly-job-08] | `-- Installing perl5-5.20.3_8...
[93amd64-quarterly-job-08] | `-- Extracting perl5-5.20.3_8: .......... done
<snip>
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... (cached) /usr/bin/fgrep
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... no
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcpp
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd9.3 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd9.3 ld.so
checking how to hardcode library paths into programs... immediate
checking how to run the C preprocessor... gcpp
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) gcc3
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for arpa/inet.h... (cached) yes
checking for netdb.h... (cached) yes
checking for netinet/in.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for sys/socket.h... (cached) yes
checking for unistd.h... (cached) yes
checking gtk.h usability... no
checking gtk.h presence... no
checking for gtk.h... no
checking for pid_t... (cached) yes
checking for size_t... (cached) yes
checking for vfork.h... (cached) no
checking for fork... (cached) yes
checking for vfork... (cached) yes
checking for working fork... yes
checking for working vfork... (cached) yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... (cached) yes
checking for dup2... (cached) yes
checking for floor... yes
checking for gethostbyname... (cached) yes
checking for memset... (cached) yes
checking for socket... yes
checking for sqrt... yes
checking for strcasecmp... (cached) yes
checking for strchr... yes
checking for strcspn... (cached) yes
checking for strerror... (cached) yes
checking for strncasecmp... (cached) yes
checking for strrchr... yes
checking for strstr... yes
checking for strtol... (cached) yes
checking for uname... (cached) yes
checking pkg-config is at least version 0.9.0... yes
checking for DEPS... yes
checking for glib-genmarshal... glib-genmarshal
checking curl/curl.h usability... yes
checking curl/curl.h presence... no
configure: WARNING: curl/curl.h: accepted by the compiler, rejected by the preprocessor!
configure: WARNING: curl/curl.h: proceeding with the compiler's result
checking for curl/curl.h... yes
checking execinfo.h usability... yes
checking execinfo.h presence... no
configure: WARNING: execinfo.h: accepted by the compiler, rejected by the preprocessor!
configure: WARNING: execinfo.h: proceeding with the compiler's result
checking for execinfo.h... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/include/Makefile
config.status: creating src/gbtoolsUtils/Makefile
config.status: creating src/gbtoolsGUI/Makefile
config.status: creating src/gbtoolsCurl/Makefile
config.status: creating src/gbtoolsPfetch/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
-------------------------------------------------
gbtools Version 0.3.0
Prefix: '/usr/local'
Compiler: 'g++ -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing '
Now type 'make [<target>]'
where the optional [<target>] is:
all - build all libraries (default)
install - build and install everything
-------------------------------------------------
-------------------------------------------------
SeqTools Version 4.41.1
Prefix: '/usr/local'
Compiler: 'gcc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing '
Now type 'make [<target>]'
where the optional [<target>] is:
all - build all binaries (default)
install - build and install everything
<program> - build specific program
-------------------------------------------------
===========================================================================
=======================<phase: build >============================
===> Building for seqtools-4.41.1
/usr/bin/make all-recursive
Making all in .
Making all in gbtools
/usr/bin/make all-recursive
Making all in src
Making all in include
Making all in gbtoolsUtils
Making all in .
/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -std=c++0x -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT gbtoolsUtils.lo -MD -MP -MF .deps/gbtoolsUtils.Tpo -c -o gbtoolsUtils.lo gbtoolsUtils.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -std=c++0x -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT gbtoolsUtils.lo -MD -MP -MF .deps/gbtoolsUtils.Tpo -c gbtoolsUtils.cpp -o gbtoolsUtils.o
cc1plus: error: unrecognized command line option "-std=c++0x"
*** [gbtoolsUtils.lo] Error code 1
Stop in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.41.1/gbtools/src/gbtoolsUtils.
*** [all-recursive] Error code 1
Stop in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.41.1/gbtools/src/gbtoolsUtils.
*** [all-recursive] Error code 1
Stop in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.41.1/gbtools/src.
*** [all-recursive] Error code 1
Stop in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.41.1/gbtools.
*** [all] Error code 1
Stop in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.41.1/gbtools.
*** [all-recursive] Error code 1
Stop in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.41.1.
*** [all] Error code 1
Stop in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.41.1.
*** [do-build] Error code 1
Stop in /usr/ports/biology/seqtools.
More information about the freebsd-pkg-fallout
mailing list