[package - head-mips-default][biology/migrate] Failed for migrate-3.6.11 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Fri Aug 7 12:58:02 UTC 2015
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports at FreeBSD.org
Last committer: wen at FreeBSD.org
Ident: $FreeBSD: head/biology/migrate/Makefile 390793 2015-06-28 15:30:41Z wen $
Log URL: http://beefy7.nyi.freebsd.org/data/head-mips-default/p393537_s286292/logs/migrate-3.6.11.log
Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p393537_s286292
Log:
====>> Building biology/migrate
build started at Fri Aug 7 12:56:37 UTC 2015
port directory: /usr/ports/biology/migrate
building for: FreeBSD head-mips-default-job-02 11.0-CURRENT FreeBSD 11.0-CURRENT r286292 mips
maintained by: ports at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/migrate/Makefile 390793 2015-06-28 15:30:41Z wen $
Poudriere version: 3.1.7
Host OSVERSION: 1100076
Jail OSVERSION: 1100077
!!! Jail is newer than host. (Jail: 1100077, Host: 1100076) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
UNAME_p=mips
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1100077
UNAME_v=FreeBSD 11.0-CURRENT r286292
UNAME_r=11.0-CURRENT
LC_COLLATE=C
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=screen
MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=migrate-3.6.11
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool
MASTERNAME=head-mips-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.7
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for migrate-3.6.11:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
THREAD=off: Build with THREAD support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
ac_cv_prog_GMAKE="/nxb-bin/usr/bin/make" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTNAME=migrate
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/migrate"
EXAMPLESDIR="share/examples/migrate"
DATADIR="share/migrate"
WWWDIR="www/migrate"
ETCDIR="etc/migrate"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/migrate
DOCSDIR=/usr/local/share/doc/migrate
EXAMPLESDIR=/usr/local/share/examples/migrate
WWWDIR=/usr/local/www/migrate
ETCDIR=/usr/local/etc/migrate
--End SUB_LIST--
---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
<snip>
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
MACHINE=mips
MACHINE_ARCH=mips
ARCH=${MACHINE_ARCH}
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> migrate-3.6.11 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.5.5.txz
[head-mips-default-job-02] Installing pkg-1.5.5...
[head-mips-default-job-02] Extracting pkg-1.5.5: .......... done
Message for pkg-1.5.5:
If you are upgrading from the old package format, first run:
# pkg2ng
===> migrate-3.6.11 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of migrate-3.6.11
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by migrate-3.6.11 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by migrate-3.6.11 for building
=> SHA256 Checksum OK for migrate-3.6.11.src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by migrate-3.6.11 for building
===> Extracting for migrate-3.6.11
=> SHA256 Checksum OK for migrate-3.6.11.src.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for migrate-3.6.11
===> Applying FreeBSD patches for migrate-3.6.11
===========================================================================
=======================<phase: build-depends >============================
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for migrate-3.6.11
configure: loading site script /usr/ports/Templates/config.site
checking build system type... mips-portbld-freebsd11.0
checking host system type... mips-portbld-freebsd11.0
checking target system type... mips-portbld-freebsd11.0
./configure: USERFLAGS+=-O2: not found
checking for gmake... (cached) /nxb-bin/usr/bin/make
=======================================================================
Migrate subversion:
Hardware: portbld
System OS: freebsd11.0 FreeBSD
System CPU: mips
-----------------------------------------------------------------------
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /nxb-bin/usr/bin/cc accepts -g... yes
checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether /nxb-bin/usr/bin/c++ accepts -g... yes
./configure: CFLAGS+=: not found
C-compiler: /nxb-bin/usr/bin/cc
C++-compiler:/nxb-bin/usr/bin/c++
CFLAGS: -O2 -pipe -G0 -fno-strict-aliasing
=======================================================================
checking for a BSD-compatible install... /usr/bin/install -c
checking for pthread_create in -lpthread... yes
checking for MPI_Init in -lmpi... no
checking for exp in -lm... yes
checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for limits.h... (cached) yes
checking for strings.h... (cached) yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for an ANSI C-conforming const... yes
checking for size_t... (cached) yes
checking for int... (cached) yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for inline... inline
checking return type of signal handlers... void
checking for strftime... (cached) yes
checking for strcspn... (cached) yes
checking for strsep... (cached) yes
checking for lgamma... yes
checking which zlib implementation to use... autodetect
checking for main in -lz... yes
checking for gzbuffer... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating conf.h
config.status: conf.h is unchanged
MIGRATE-N is now setup
to compile the program you need to type one of the
commands below (ordered by preference):
SINGLE CPU machines
make # with PDF output support
# this might fail on first attempt,
# if the make fails, please let me know
# often linking fails because the C++ pdf library
# and the core migrate parts (C) mismatch
# check the Makefile line for STDLIB= -lstdc++
SMP machines more than 1 CPU in machine
make thread # uses the thread library if present
make # on macs running macos 10.6+ using GrandCentral
PARALLEL Computers, Clusters with MPI software
make mpis # each cpu-core can be treated as a node
make mpis-thread # experimental, may increase load per node!
------------------------------------------------------------------------
SPEED and other TESTING
the migrate website contains a testsuite.tar.gz that has
many tests for single, parallel and thread compilations
the tests are driven by a python script rt (see the README
in the testsuite) and a submit script that allows to streamline
submissions to a batch queue system, currently supported systems
are SUN/ORACLE GRIDENGINE, TORQUE/MOAB, and NONE
------------------------------------------------------------------------
In case there are problems with the compile send a message to the
migrate-support at google.com usergroup, include a log of
./configure
make
=======================================================================
===========================================================================
=======================<phase: build >============================
===> Building for migrate-3.6.11
(cd ./haru ; /nxb-bin/usr/bin/make -f makefile. "CC=/nxb-bin/usr/bin/c++" "CPP=/nxb-bin/usr/bin/cc" "ARCH=mips" "MACOSVERSION=" "MYCPPFLAGS=-O2 -pipe -G0 -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ ")
make[2]: cannot open makefile..
make[2]: stopped in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/haru
*** Error code 2
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/migrate
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