[REL - 10i386-default][science/mpb] Failed for mpb-1.4.2_15 in build
pkg-fallout-builder at FreeBSD.org
pkg-fallout-builder at FreeBSD.org
Thu May 8 11:16:57 UTC 2014
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports at FreeBSD.org
Last committer: sunpoet at FreeBSD.org
Ident: $FreeBSD: head/science/mpb/Makefile 352854 2014-05-03 00:55:30Z sunpoet $
Log URL: http://beefy1.isc.freebsd.org/bulk/10i386-default/2014-05-08_06h23m23s/logs/mpb-1.4.2_15.log
Build URL: http://beefy1.isc.freebsd.org/bulk/10i386-default/2014-05-08_06h23m23s
Log:
====>> Building science/mpb
build started at Thu May 8 11:16:25 UTC 2014
port directory: /usr/ports/science/mpb
building for: FreeBSD 10i386-default-job-16 10.0-RELEASE-p1 FreeBSD 10.0-RELEASE-p1 i386
maintained by: ports at FreeBSD.org
Makefile ident: $FreeBSD: head/science/mpb/Makefile 352854 2014-05-03 00:55:30Z sunpoet $
Poudriere version: 3.1-pre
Host OSVERSION: 1100013
Jail OSVERSION: 1000510
---Begin Environment---
UNAME_m=i386
UNAME_p=i386
OSVERSION=1000510
UNAME_v=FreeBSD 10.0-RELEASE-p1
UNAME_r=10.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/build/10i386-default/ref
PKG_EXT=txz
tpid=86309
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=mpb-1.4.2_15
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
OLDPWD=/usr/local/poudriere/data/build/10i386-default/ref/poudriere/rdeps
PWD=/usr/local/poudriere/data/build/10i386-default/ref/poudriere/pool
MASTERNAME=10i386-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for mpb-1.4.2_15:
ATLAS=off: Use math/atlas instead of math/lapack
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--with-lapack=-llapack --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444"
BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=10.0
PREFIX=%D
LOCALBASE=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
PORTDATA=""
LIB32DIR=lib
DOCSDIR="share/doc/mpb"
EXAMPLESDIR="share/examples/mpb"
DATADIR="share/mpb"
WWWDIR="www/mpb"
ETCDIR="etc/mpb"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/mpb
DOCSDIR=/usr/local/share/doc/mpb
EXAMPLESDIR=/usr/local/share/examples/mpb
WWWDIR=/usr/local/www/mpb
ETCDIR=/usr/local/etc/mpb
--End SUB_LIST--
---Begin make.conf---
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===> Cleaning for mpb-1.4.2_15
=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> mpb-1.4.2_15 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.2.7_2.txz
Installing pkg-1.2.7_2... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of mpb-1.4.2_15
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by mpb-1.4.2_15 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by mpb-1.4.2_15 for building
=> SHA256 Checksum OK for mpb-1.4.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by mpb-1.4.2_15 for building
===> Extracting for mpb-1.4.2_15
=> SHA256 Checksum OK for mpb-1.4.2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for mpb-1.4.2_15
===========================================================================
=======================<phase: build-depends >============================
===> mpb-1.4.2_15 depends on executable: bash - not found
===> Verifying install for bash in /usr/ports/shells/bash
===> Installing existing package /packages/All/bash-4.3.11_2.txz
Installing bash-4.3.11_2...Installing gettext-0.18.3.1... done
Updating /etc/shells
done
======================================================================
bash requires fdescfs(5) mounted on /dev/fd
If you have not done it yet, please do the following:
mount -t fdescfs fdesc /dev/fd
To make it permanent, you need the following lines in /etc/fstab:
fdesc /dev/fd fdescfs rw 0 0
======================================================================
===> Returning to build of mpb-1.4.2_15
===> mpb-1.4.2_15 depends on executable: gfortran47 - not found
===> Verifying install for gfortran47 in /usr/ports/lang/gcc
===> Installing existing package /packages/All/gcc-4.7.3_1.txz
Installing gcc-4.7.3_1...Installing binutils-2.24... done
Installing gcc-ecj-4.5... done
Installing gmp-5.1.3_2... done
Installing mpc-1.0.2...Installing mpfr-3.1.2_2... done
done
done
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc47
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> Returning to build of mpb-1.4.2_15
===> mpb-1.4.2_15 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> mpb-1.4.2_15 depends on shared library: libfftw.so - not found
===> Verifying for libfftw.so in /usr/ports/math/fftw
===> Installing existing package /packages/All/fftw-2.1.5_10.txz
Installing fftw-2.1.5_10... done
===> Returning to build of mpb-1.4.2_15
===> mpb-1.4.2_15 depends on shared library: libhdf5.so - not found
===> Verifying for libhdf5.so in /usr/ports/science/hdf5
===> Installing existing package /packages/All/hdf5-1.8.12.txz
Installing hdf5-1.8.12... done
===> Returning to build of mpb-1.4.2_15
===> mpb-1.4.2_15 depends on shared library: libctl.so - not found
===> Verifying for libctl.so in /usr/ports/science/libctl
===> Installing existing package /packages/All/libctl-3.2.1_2.txz
Installing libctl-3.2.1_2...Installing guile-1.8.8_1...Installing libltdl-2.4.2_2... done
done
done
===> Returning to build of mpb-1.4.2_15
===> mpb-1.4.2_15 depends on shared library: libguile.so - found
===> mpb-1.4.2_15 depends on shared library: libblas.so - not found
===> Verifying for libblas.so in /usr/ports/math/blas
===> Installing existing package /packages/All/blas-3.4.2_2.txz
<snip>
attr_id = H5Acreate(id, name, type_id, space_id, H5P_DEFAULT);
~~~~~~~~~ ^
/usr/local/include/H5Apublic.h:44:8: note: 'H5Acreate2' declared here
H5_DLL hid_t H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id,
^
matrixio.c:112:11: error: too few arguments to function call, expected 3, have 2
SUPPRESS_HDF5_ERRORS(attr_id = H5Dopen(id, name));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrixio.c:69:55: note: expanded from macro 'SUPPRESS_HDF5_ERRORS'
H5Eget_auto(&xxxxx_err_func, &xxxxx_err_func_data); \
~~~~~~~~~~~ ^
/usr/local/include/H5Epublic.h:173:8: note: 'H5Eget_auto2' declared here
H5_DLL herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data);
^
matrixio.c:112:11: error: too few arguments to function call, expected 3, have 2
SUPPRESS_HDF5_ERRORS(attr_id = H5Dopen(id, name));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrixio.c:70:28: note: expanded from macro 'SUPPRESS_HDF5_ERRORS'
H5Eset_auto(NULL, NULL); \
~~~~~~~~~~~ ^
/usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here
H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data);
^
matrixio.c:112:58: error: too few arguments to function call, expected 3, have 2
SUPPRESS_HDF5_ERRORS(attr_id = H5Dopen(id, name));
~~~~~~~ ^
matrixio.c:71:8: note: expanded from macro 'SUPPRESS_HDF5_ERRORS'
{ statements; } \
^
/usr/local/include/H5Dpublic.h:123:8: note: 'H5Dopen2' declared here
H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id);
^
matrixio.c:112:11: error: too few arguments to function call, expected 3, have 2
SUPPRESS_HDF5_ERRORS(attr_id = H5Dopen(id, name));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrixio.c:72:53: note: expanded from macro 'SUPPRESS_HDF5_ERRORS'
H5Eset_auto(xxxxx_err_func, xxxxx_err_func_data); \
~~~~~~~~~~~ ^
/usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here
H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data);
^
matrixio.c:119:11: error: too few arguments to function call, expected 3, have 2
SUPPRESS_HDF5_ERRORS(attr_id = H5Aopen_name(id, name));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrixio.c:69:55: note: expanded from macro 'SUPPRESS_HDF5_ERRORS'
H5Eget_auto(&xxxxx_err_func, &xxxxx_err_func_data); \
~~~~~~~~~~~ ^
/usr/local/include/H5Epublic.h:173:8: note: 'H5Eget_auto2' declared here
H5_DLL herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data);
^
matrixio.c:119:11: error: too few arguments to function call, expected 3, have 2
SUPPRESS_HDF5_ERRORS(attr_id = H5Aopen_name(id, name));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrixio.c:70:28: note: expanded from macro 'SUPPRESS_HDF5_ERRORS'
H5Eset_auto(NULL, NULL); \
~~~~~~~~~~~ ^
/usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here
H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data);
^
matrixio.c:119:11: error: too few arguments to function call, expected 3, have 2
SUPPRESS_HDF5_ERRORS(attr_id = H5Aopen_name(id, name));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrixio.c:72:53: note: expanded from macro 'SUPPRESS_HDF5_ERRORS'
H5Eset_auto(xxxxx_err_func, xxxxx_err_func_data); \
~~~~~~~~~~~ ^
/usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here
H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data);
^
matrixio.c:419:58: error: too few arguments to function call, expected 5, have 3
sub_id = H5Gcreate(id, name, 0 /* ==> default size */ );
~~~~~~~~~ ^
/usr/local/include/H5Gpublic.h:75:8: note: 'H5Gcreate2' declared here
H5_DLL hid_t H5Gcreate2(hid_t loc_id, const char *name, hid_t lcpl_id,
^
matrixio.c:424:17: warning: expression result unused [-Wunused-value]
IF_EXCLUSIVE(0,MPI_Barrier(MPI_COMM_WORLD));
^
matrixio.c:57:32: note: expanded from macro 'IF_EXCLUSIVE'
# define IF_EXCLUSIVE(yes,no) yes
^
matrixio.c:429:29: error: too few arguments to function call, expected 3, have 2
sub_id = H5Gopen(id, name);
~~~~~~~ ^
/usr/local/include/H5Gpublic.h:78:8: note: 'H5Gopen2' declared here
H5_DLL hid_t H5Gopen2(hid_t loc_id, const char *name, hid_t gapl_id);
^
matrixio.c:427:17: warning: expression result unused [-Wunused-value]
IF_EXCLUSIVE(0,MPI_Barrier(MPI_COMM_WORLD));
^
matrixio.c:57:32: note: expanded from macro 'IF_EXCLUSIVE'
# define IF_EXCLUSIVE(yes,no) yes
^
matrixio.c:456:32: error: too few arguments to function call, expected 3, have 2
data_id = H5Dopen(id, name);
~~~~~~~ ^
/usr/local/include/H5Dpublic.h:123:8: note: 'H5Dopen2' declared here
H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id);
^
matrixio.c:458:39: error: too few arguments to function call, expected 3, have 2
CHECK((data_id = H5Dopen(id, name)) >= 0, "error in H5Dopen");
~~~~~~~ ^
./util/check.h:37:12: note: expanded from macro 'CHECK'
if (!(condition)) { \
^
/usr/local/include/H5Dpublic.h:123:8: note: 'H5Dopen2' declared here
H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id);
^
matrixio.c:471:23: warning: comparison of integers of different signs: 'hsize_t' (aka 'unsigned long long') and 'const int' [-Wsign-compare]
CHECK(dims_copy[i] == dims[i],
~~~~~~~~~~~~ ^ ~~~~~~~
./util/check.h:37:12: note: expanded from macro 'CHECK'
if (!(condition)) { \
^
matrixio.c:502:17: warning: expression result unused [-Wunused-value]
IF_EXCLUSIVE(0,MPI_Barrier(MPI_COMM_WORLD));
^
matrixio.c:57:32: note: expanded from macro 'IF_EXCLUSIVE'
# define IF_EXCLUSIVE(yes,no) yes
^
matrixio.c:525:69: error: too few arguments to function call, expected 7, have 5
data_id = H5Dcreate(id, name, type_id, space_id, H5P_DEFAULT);
~~~~~~~~~ ^
matrixio.c:57:32: note: expanded from macro 'IF_EXCLUSIVE'
# define IF_EXCLUSIVE(yes,no) yes
^
/usr/local/include/H5Dpublic.h:119:8: note: 'H5Dcreate2' declared here
H5_DLL hid_t H5Dcreate2(hid_t loc_id, const char *name, hid_t type_id,
^
matrixio.c:527:35: error: too few arguments to function call, expected 3, have 2
data_id = H5Dopen(id, name),
~~~~~~~ ^
matrixio.c:57:32: note: expanded from macro 'IF_EXCLUSIVE'
# define IF_EXCLUSIVE(yes,no) yes
^
/usr/local/include/H5Dpublic.h:123:8: note: 'H5Dopen2' declared here
H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id);
^
matrixio.c:551:6: error: too few arguments to function call, expected 3, have 2
SUPPRESS_HDF5_ERRORS(data_id = H5Dopen(id, name));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrixio.c:69:55: note: expanded from macro 'SUPPRESS_HDF5_ERRORS'
H5Eget_auto(&xxxxx_err_func, &xxxxx_err_func_data); \
~~~~~~~~~~~ ^
/usr/local/include/H5Epublic.h:173:8: note: 'H5Eget_auto2' declared here
H5_DLL herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data);
^
matrixio.c:551:6: error: too few arguments to function call, expected 3, have 2
SUPPRESS_HDF5_ERRORS(data_id = H5Dopen(id, name));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrixio.c:70:28: note: expanded from macro 'SUPPRESS_HDF5_ERRORS'
H5Eset_auto(NULL, NULL); \
~~~~~~~~~~~ ^
/usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here
H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data);
^
matrixio.c:551:53: error: too few arguments to function call, expected 3, have 2
SUPPRESS_HDF5_ERRORS(data_id = H5Dopen(id, name));
~~~~~~~ ^
matrixio.c:71:8: note: expanded from macro 'SUPPRESS_HDF5_ERRORS'
{ statements; } \
^
/usr/local/include/H5Dpublic.h:123:8: note: 'H5Dopen2' declared here
H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id);
^
matrixio.c:551:6: error: too few arguments to function call, expected 3, have 2
SUPPRESS_HDF5_ERRORS(data_id = H5Dopen(id, name));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
matrixio.c:72:53: note: expanded from macro 'SUPPRESS_HDF5_ERRORS'
H5Eset_auto(xxxxx_err_func, xxxxx_err_func_data); \
~~~~~~~~~~~ ^
/usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here
H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data);
^
matrixio.c:655:10: warning: passing 'hssize_t *' (aka 'long long *') to parameter of type 'const hsize_t *' (aka 'const unsigned long long *') converts between pointers to integer types with different sign [-Wpointer-sign]
start, NULL, count, NULL);
^~~~~
/usr/local/include/H5Spublic.h:112:22: note: passing argument to parameter 'start' here
const hsize_t start[],
^
matrixio.c:664:10: warning: passing 'hssize_t *' (aka 'long long *') to parameter of type 'const hsize_t *' (aka 'const unsigned long long *') converts between pointers to integer types with different sign [-Wpointer-sign]
start, data_copy_stride <= 1 ? NULL : strides,
^~~~~
/usr/local/include/H5Spublic.h:112:22: note: passing argument to parameter 'start' here
const hsize_t start[],
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
6 warnings and 20 errors generated.
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/science/mpb/work/mpb-1.4.2/src/matrixio
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/science/mpb/work/mpb-1.4.2
*** Error code 1
Stop.
make: stopped in /usr/ports/science/mpb
===> Cleaning for mpb-1.4.2_15
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