[REL - 10amd64-default][biology/mummer] Failed for mummer-3.23 in build
pkg-fallout-builder at FreeBSD.org
pkg-fallout-builder at FreeBSD.org
Thu Mar 27 22:45:06 UTC 2014
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sylvio at FreeBSD.org
Last committer: miwi at FreeBSD.org
Ident: $FreeBSD: head/biology/mummer/Makefile 348042 2014-03-13 07:41:34Z miwi $
Log URL: http://beefy2.isc.freebsd.org/bulk/10amd64-default/2014-03-27_17h14m22s/logs/mummer-3.23.log
Build URL: http://beefy2.isc.freebsd.org/bulk/10amd64-default/2014-03-27_17h14m22s
Log:
====>> Building biology/mummer
build started at Thu Mar 27 22:45:03 UTC 2014
port directory: /usr/ports/biology/mummer
building for: FreeBSD 10amd64-default-job-07 10.0-RELEASE FreeBSD 10.0-RELEASE amd64
maintained by: sylvio at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/mummer/Makefile 348042 2014-03-13 07:41:34Z miwi $
Poudriere version: 3.1-pre
---Begin Environment---
OSVERSION=1000510
UNAME_v=FreeBSD 10.0-RELEASE
UNAME_r=10.0-RELEASE
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/10amd64-default/ref
PKG_EXT=txz
tpid=24990
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=mummer-3.23
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=10amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for mummer-3.23:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" MAKE=gmake SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/mummer
DOCSDIR=/usr/local/share/doc/mummer
EXAMPLESDIR=/usr/local/share/examples/mummer
WWWDIR=/usr/local/www/mummer
ETCDIR=/usr/local/etc/mummer
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===> Cleaning for mummer-3.23
=======================<phase: check-config >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> mummer-3.23 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.2.7.txz
Installing pkg-1.2.7... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of mummer-3.23
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by mummer-3.23 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by mummer-3.23 for building
=> SHA256 Checksum OK for MUMmer3.23.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by mummer-3.23 for building
===> Extracting for mummer-3.23
=> SHA256 Checksum OK for MUMmer3.23.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for mummer-3.23
===========================================================================
=======================<phase: build-depends >============================
===> mummer-3.23 depends on executable: gmake - not found
===> Verifying install for gmake in /usr/ports/devel/gmake
===> Installing existing package /packages/All/gmake-3.82_1.txz
Installing gmake-3.82_1...Installing gettext-0.18.3.1... done
done
===> Returning to build of mummer-3.23
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for mummer-3.23
===========================================================================
=======================<phase: build >============================
===> Building for mummer-3.23
gcc: not found
g++: not found
perl: not found
gmake[1]: Entering directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23'
cd /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz; gmake mummer
gmake[2]: Entering directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz'
cd libbasedir; gmake libbase.a
gmake[3]: Entering directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/libbasedir'
O3 -c -o cleanMUMcand.o cleanMUMcand.c
gmake[3]: O3: Command not found
gmake[3]: [cleanMUMcand.o] Error 127 (ignored)
O3 -c -o clock.o clock.c
gmake[3]: O3: Command not found
gmake[3]: [clock.o] Error 127 (ignored)
O3 -c -o mapfile.o mapfile.c
gmake[3]: O3: Command not found
gmake[3]: [mapfile.o] Error 127 (ignored)
O3 -c -o multiseq.o multiseq.c
gmake[3]: O3: Command not found
gmake[3]: [multiseq.o] Error 127 (ignored)
O3 -c -o procopt.o procopt.c
gmake[3]: O3: Command not found
gmake[3]: [procopt.o] Error 127 (ignored)
O3 -c -o safescpy.o safescpy.c
gmake[3]: O3: Command not found
gmake[3]: [safescpy.o] Error 127 (ignored)
O3 -c -o seterror.o seterror.c
gmake[3]: O3: Command not found
gmake[3]: [seterror.o] Error 127 (ignored)
O3 -c -o space.o space.c
gmake[3]: O3: Command not found
gmake[3]: [space.o] Error 127 (ignored)
ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o
ar: warning: creating libbase.a
ar: warning: can't open file: cleanMUMcand.o: No such file or directory
ar: warning: can't open file: clock.o: No such file or directory
ar: warning: can't open file: mapfile.o: No such file or directory
ar: warning: can't open file: multiseq.o: No such file or directory
ar: warning: can't open file: procopt.o: No such file or directory
ar: warning: can't open file: safescpy.o: No such file or directory
ar: warning: can't open file: seterror.o: No such file or directory
ar: warning: can't open file: space.o: No such file or directory
gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/libbasedir'
cd streesrc; gmake libstree.a
gmake[3]: Entering directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/streesrc'
O3 -I../libbasedir -DSTREEHUGE -c -o construct.o construct.c
gmake[3]: O3: Command not found
gmake[3]: [construct.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE -c -o access.o access.c
gmake[3]: O3: Command not found
gmake[3]: [access.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE -c -o scanpref.o scanpref.c
gmake[3]: O3: Command not found
gmake[3]: [scanpref.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE -c -o linkloc.o linkloc.c
gmake[3]: O3: Command not found
gmake[3]: [linkloc.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE -c -o depthtab.o depthtab.c
gmake[3]: O3: Command not found
gmake[3]: [depthtab.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE -c -o ex2leav.o ex2leav.c
gmake[3]: O3: Command not found
gmake[3]: [ex2leav.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE -c -o dfs.o dfs.c
gmake[3]: O3: Command not found
gmake[3]: [dfs.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE -c -o overmax.o overmax.c
gmake[3]: O3: Command not found
gmake[3]: [overmax.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE -c -o oversucc.o oversucc.c
gmake[3]: O3: Command not found
gmake[3]: [oversucc.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE -c -o addleafcount.o addleafcount.c
gmake[3]: O3: Command not found
gmake[3]: [addleafcount.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE -c -o iterator.o iterator.c
gmake[3]: O3: Command not found
gmake[3]: [iterator.o] Error 127 (ignored)
ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o
ar: warning: creating libstree.a
ar: warning: can't open file: construct.o: No such file or directory
ar: warning: can't open file: access.o: No such file or directory
ar: warning: can't open file: scanpref.o: No such file or directory
ar: warning: can't open file: linkloc.o: No such file or directory
ar: warning: can't open file: depthtab.o: No such file or directory
ar: warning: can't open file: ex2leav.o: No such file or directory
ar: warning: can't open file: dfs.o: No such file or directory
ar: warning: can't open file: overmax.o: No such file or directory
ar: warning: can't open file: oversucc.o: No such file or directory
ar: warning: can't open file: addleafcount.o: No such file or directory
ar: warning: can't open file: iterator.o: No such file or directory
gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/streesrc'
cd mm3src; gmake mummer
gmake[3]: Entering directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/mm3src'
O3 -I../libbasedir -I../streesrc -c -o maxmat3.o maxmat3.c
gmake[3]: O3: Command not found
gmake[3]: [maxmat3.o] Error 127 (ignored)
O3 -I../libbasedir -I../streesrc -c -o maxmatopt.o maxmatopt.c
gmake[3]: O3: Command not found
gmake[3]: [maxmatopt.o] Error 127 (ignored)
O3 -I../libbasedir -I../streesrc -c -o maxmatinp.o maxmatinp.c
gmake[3]: O3: Command not found
gmake[3]: [maxmatinp.o] Error 127 (ignored)
O3 -I../libbasedir -I../streesrc -c -o findmumcand.o findmumcand.c
gmake[3]: O3: Command not found
gmake[3]: [findmumcand.o] Error 127 (ignored)
O3 -I../libbasedir -I../streesrc -c -o findmaxmat.o findmaxmat.c
gmake[3]: O3: Command not found
gmake[3]: [findmaxmat.o] Error 127 (ignored)
O3 -I../libbasedir -I../streesrc -c -o procmaxmat.o procmaxmat.c
gmake[3]: O3: Command not found
gmake[3]: [procmaxmat.o] Error 127 (ignored)
maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \
-o /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/mummer; chmod 755 /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/mummer
maxmat3.o: not found
chmod: /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/mummer: No such file or directory
gmake[3]: *** [mummer] Error 1
gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/mm3src'
gmake[2]: *** [mummer] Error 2
gmake[2]: Leaving directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz'
gmake[1]: *** [kurtz] Error 2
gmake[1]: Leaving directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/mummer
===> Cleaning for mummer-3.23
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