[REL - 91i386-default][science/minc2] Failed for minc-2.2.00_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Wed Oct 9 23:37:12 UTC 2013
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwbacon at tds.net
Last committer: bapt at FreeBSD.org
Ident: $FreeBSD: head/science/minc2/Makefile 327767 2013-09-20 22:48:30Z bapt $
Log URL: http://beefy1.isc.freebsd.org/bulk/91i386-default/2013-10-09_14h59m01s/logs/minc-2.2.00_1.log
Build URL: http://beefy1.isc.freebsd.org/bulk/91i386-default/2013-10-09_14h59m01s
Log:
====>> Building science/minc2
build started at Wed Oct 9 23:37:00 UTC 2013
port directory: /usr/ports/science/minc2
building for: FreeBSD 91i386-default-job-08 9.1-RELEASE FreeBSD 9.1-RELEASE i386
maintained by: jwbacon at tds.net
Makefile ident: $FreeBSD: head/science/minc2/Makefile 327767 2013-09-20 22:48:30Z bapt $
Poudriere version: 3.1-pre
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PKG_EXT=txz
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PKGNAME=minc-2.2.00_1
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
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--MAKE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS=" -I/usr/local/include -DH5_USE_16_API" LDFLAGS=" -L/usr/local/lib -pthread" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--SUB_LIST--
PREFIX=/usr/local
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#### /usr/local/etc/poudriere.d/make.conf ####
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---End make.conf---
===> Cleaning for minc-2.2.00_1
=======================<phase: check-config >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> minc-2.2.00_1 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.1.4_7.txz
Installing pkg-1.1.4_7... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of minc-2.2.00_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD accepted by the user
===> Fetching all distfiles required by minc-2.2.00_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD accepted by the user
===> Fetching all distfiles required by minc-2.2.00_1 for building
=> SHA256 Checksum OK for minc-2.2.00.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD accepted by the user
===> Fetching all distfiles required by minc-2.2.00_1 for building
===> Extracting for minc-2.2.00_1
=> SHA256 Checksum OK for minc-2.2.00.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for minc-2.2.00_1
===========================================================================
=======================<phase: build-depends >============================
===> minc-2.2.00_1 depends on file: /usr/local/bin/cmake - not found
===> Verifying install for /usr/local/bin/cmake in /usr/ports/devel/cmake
===> Installing existing package /packages/All/cmake-2.8.11.2.txz
Installing cmake-2.8.11.2...Installing cmake-modules-2.8.11.2_1... done
done
===> Returning to build of minc-2.2.00_1
===> minc-2.2.00_1 depends on executable: bison - not found
===> Verifying install for bison in /usr/ports/devel/bison
===> Installing existing package /packages/All/bison-2.7.1,1.txz
Installing bison-2.7.1,1...Installing m4-1.4.17,1... done
Installing gettext-0.18.3...Installing libiconv-1.14_1... done
done
done
===> Returning to build of minc-2.2.00_1
===========================================================================
=======================<phase: lib-depends >============================
===> minc-2.2.00_1 depends on shared library: netcdf.4 - not found
===> Verifying install for netcdf.4 in /usr/ports/science/netcdf
===> Installing existing package /packages/All/netcdf-3.6.3_4.txz
Installing netcdf-3.6.3_4... done
===> Returning to build of minc-2.2.00_1
===> minc-2.2.00_1 depends on shared library: hdf5 - not found
===> Verifying install for hdf5 in /usr/ports/science/hdf5
===> Installing existing package /packages/All/hdf5-1.6.9_2.txz
Installing hdf5-1.6.9_2... done
===> Returning to build of minc-2.2.00_1
===========================================================================
=======================<phase: configure >============================
===> Configuring for minc-2.2.00_1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/minc2/work/.build
-- The C compiler identification is GNU 4.2.1
-- The CXX compiler identification is GNU 4.2.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found NetCDF headers: /usr/local/include
-- Found NetCDF library: /usr/local/lib/libnetcdf.so
-- Found ZLIB: /usr/lib/libz.so (found version "1.2.7")
-- Found components for HDF5
-- HDF5 library : /usr/local/lib/libhdf5.so
-- HDF5 headers : /usr/local/include
-- Looking for mkstemp
-- Looking for mkstemp - found
-- Looking for tmpnam
-- Looking for tmpnam - found
-- Looking for tempnam
-- Looking for tempnam - found
-- Looking for strerror
-- Looking for strerror - found
-- Looking for popen
-- Looking for popen - found
-- Looking for fork
-- Looking for fork - found
-- Looking for vfork
-- Looking for vfork - found
-- Looking for fdopen
-- Looking for fdopen - found
-- Looking for strdup
-- Looking for strdup - found
-- Looking for getpwnam
-- Looking for getpwnam - found
-- Looking for select
-- Looking for select - found
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for system
-- Looking for system - found
-- Looking for include file float.h
-- Looking for include file float.h - found
-- Looking for include file sys/dir.h
-- Looking for include file sys/dir.h - found
-- Looking for include file sys/ndir.h
-- Looking for include file sys/ndir.h - not found
-- Looking for include file sys/stat.h
-- Looking for include file sys/stat.h - found
-- Looking for include file sys/types.h
-- Looking for include file sys/types.h - found
-- Looking for include file sys/wait.h
-- Looking for include file sys/wait.h - found
-- Looking for include file values.h
-- Looking for include file values.h - not found
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file dirent.h
-- Looking for include file dirent.h - found
-- Looking for include file memory.h
-- Looking for include file memory.h - found
-- Looking for include file stdlib.h
-- Looking for include file stdlib.h - found
-- Looking for include file fcntl.h
-- Looking for include file fcntl.h - found
-- Looking for include file dlfcn.h
-- Looking for include file dlfcn.h - found
-- Looking for include file vfork.h
-- Looking for include file vfork.h - not found
-- Looking for include file inttypes.h
-- Looking for include file inttypes.h - found
-- Looking for include file string.h
-- Looking for include file string.h - found
-- Looking for include file strings.h
-- Looking for include file strings.h - found
-- Looking for include file pwd.h
-- Looking for include file pwd.h - found
-- Found BISON: /usr/local/bin/bison (found version "2.7.12-4996")
-- Found FLEX: /usr/bin/flex (found version "2.5.4")
CMake Warning (dev) at CMakeLists.txt:334 (ADD_SUBDIRECTORY):
The source directory
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc
does not contain a CMakeLists.txt file.
CMake does not support this case but it used to work accidentally and is
being allowed for compatibility.
Policy CMP0014 is not set: Input directories must have CMakeLists.txt. Run
"cmake --help-policy CMP0014" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:409 (ADD_SUBDIRECTORY):
The source directory
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/testdir
does not contain a CMakeLists.txt file.
CMake does not support this case but it used to work accidentally and is
being allowed for compatibility.
Policy CMP0014 is not set: Input directories must have CMakeLists.txt. Run
"cmake --help-policy CMP0014" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_CXX_FLAGS_DEBUG
CMAKE_CXX_FLAGS_RELEASE
CMAKE_C_FLAGS_DEBUG
CMAKE_MODULE_LINKER_FLAGS
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/science/minc2/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for minc-2.2.00_1
/usr/local/bin/cmake -H/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -B/wrkdirs/usr/ports/science/minc2/work/.build --check-build-system CMakeFiles/Makefile.cmake 0
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/usr/bin/make -f CMakeFiles/Makefile2 all
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cd /wrkdirs/usr/ports/science/minc2/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 /wrkdirs/usr/ports/science/minc2/work/.build /wrkdirs/usr/ports/science/minc2/work/.build /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles/minc2.dir/DependInfo.cmake
Scanning dependencies of target minc2
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/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles 21
[ 8%] Building C object CMakeFiles/minc2.dir/libsrc/hdf_convenience.c.o
/usr/bin/cc -DHAVE_CONFIG_H -Dminc2_EXPORTS -O2 -pipe -fno-strict-aliasing -fPIC -O2 -pipe -fno-strict-aliasing -fPIC -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -I/wrkdirs/usr/ports/science/minc2/work/.build -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/volume_io/Include -I/usr/local/include -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc2 -o CMakeFiles/minc2.dir/libsrc/hdf_convenience.c.o -c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c: In function 'hdf_put_dimorder':
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:621: error: too many arguments to function 'H5Acreate'
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c: In function 'hdf_set_length':
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:928: error: too many arguments to function 'H5Acreate'
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c: In function 'hdf_attput':
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:1189: error: too many arguments to function 'H5Acreate'
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c: In function 'hdf_copy_attr':
/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:2071: error: too many arguments to function 'H5Acreate'
*** [CMakeFiles/minc2.dir/libsrc/hdf_convenience.c.o] Error code 1
Stop in /wrkdirs/usr/ports/science/minc2/work/.build.
*** [CMakeFiles/minc2.dir/all] Error code 1
Stop in /wrkdirs/usr/ports/science/minc2/work/.build.
*** [all] Error code 1
Stop in /wrkdirs/usr/ports/science/minc2/work/.build.
*** [do-build] Error code 1
Stop in /usr/ports/science/minc2.
===> Cleaning for minc-2.2.00_1
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