[package - main-amd64-default][science/bagel] Failed for bagel-1.2.2_6 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu May 13 23:37:26 UTC 2021
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Log URL: http://beefy18.nyi.freebsd.org/data/main-amd64-default/p463524251ec6_s6de3cf14c4/logs/bagel-1.2.2_6.log
Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=p463524251ec6_s6de3cf14c4
Log:
=>> Building science/bagel
build started at Thu May 13 23:15:15 UTC 2021
port directory: /usr/ports/science/bagel
package name: bagel-1.2.2_6
building for: FreeBSD main-amd64-default-job-06 14.0-CURRENT FreeBSD 14.0-CURRENT 1400013 amd64
maintained by: yuri at FreeBSD.org
Makefile ident:
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Host OSVERSION: 1400008
Jail OSVERSION: 1400013
Job Id: 06
!!! Jail is newer than host. (Jail: 1400013, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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yuri at FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> bagel-1.2.2_6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[main-amd64-default-job-06] Installing pkg-1.16.3...
[main-amd64-default-job-06] Extracting pkg-1.16.3: .......... done
===> bagel-1.2.2_6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of bagel-1.2.2_6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bagel-1.2.2_6 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bagel-1.2.2_6 for building
=> SHA256 Checksum OK for nubakery-bagel-v1.2.2_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bagel-1.2.2_6 for building
===> Extracting for bagel-1.2.2_6
=> SHA256 Checksum OK for nubakery-bagel-v1.2.2_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for bagel-1.2.2_6
===> Applying FreeBSD patches for bagel-1.2.2_6 from /usr/ports/science/bagel/files
===========================================================================
=======================<phase: build-depends >============================
===> bagel-1.2.2_6 depends on executable: gfortran10 - not found
===> Installing existing package /packages/All/gcc10-10.3.0.txz
<snip>
In file included from ../../src/df/dfinttask_old.h:28:
./../src/integral/rys/rysintegral.h:153:18: warning: 'compute' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void compute() = 0;
^
./../src/integral/rys/rysintegral.h:174:30: note: in instantiation of template class 'bagel::RysIntegral<std::__1::complex<double>, bagel::Int_t::London>' requested here
extern template class bagel::RysIntegral<std::complex<double>,bagel::Int_t::London>;
^
./../src/integral/integral.h:42:18: note: overridden virtual function is here
virtual void compute() = 0;
^
3 warnings generated.
depbase=`echo nevpt2/nevpt2.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT nevpt2/nevpt2.lo -MD -MP -MF $depbase.Tpo -c -o nevpt2/nevpt2.lo nevpt2/nevpt2.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT nevpt2/nevpt2.lo -MD -MP -MF nevpt2/.deps/nevpt2.Tpo -c nevpt2/nevpt2.cc -fPIC -DPIC -o nevpt2/.libs/nevpt2.o
5 warnings generated.
depbase=`echo dmp2/dmp2.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT dmp2/dmp2.lo -MD -MP -MF $depbase.Tpo -c -o dmp2/dmp2.lo dmp2/dmp2.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT dmp2/dmp2.lo -MD -MP -MF dmp2/.deps/dmp2.Tpo -c dmp2/dmp2.cc -fPIC -DPIC -o dmp2/.libs/dmp2.o
In file included from nevpt2/nevpt2.cc:25:
In file included from ../../src/pt2/nevpt2/nevpt2.h:29:
In file included from ../../src/pt2/mp2/mp2cache.h:29:
In file included from ../../src/df/dfdistt.h:29:
In file included from ../../src/df/df.h:28:
In file included from ../../src/df/paralleldf.h:29:
In file included from ../../src/df/dfinttask_old.h:28:
In file included from ../../src/integral/rys/rysintegral.h:32:
In file included from ../../src/molecule/shell.h:29:
./../src/util/math/zmatrix.h:73:18: warning: 'diagonalize' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void diagonalize(VecView vec);
^
./../src/util/math/matrix_base.h:123:18: note: overridden virtual function is here
virtual void diagonalize(VecView vec) = 0;
^
In file included from nevpt2/nevpt2.cc:25:
In file included from ../../src/pt2/nevpt2/nevpt2.h:29:
In file included from ../../src/pt2/mp2/mp2cache.h:29:
In file included from ../../src/df/dfdistt.h:29:
In file included from ../../src/df/df.h:28:
In file included from ../../src/df/paralleldf.h:29:
In file included from ../../src/df/dfinttask_old.h:28:
./../src/integral/rys/rysintegral.h:153:18: warning: 'compute' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void compute() = 0;
^
./../src/integral/rys/rysintegral.h:173:30: note: in instantiation of template class 'bagel::RysIntegral<double, bagel::Int_t::Standard>' requested here
extern template class bagel::RysIntegral<double,bagel::Int_t::Standard>;
^
./../src/integral/integral.h:42:18: note: overridden virtual function is here
virtual void compute() = 0;
^
In file included from nevpt2/nevpt2.cc:25:
In file included from ../../src/pt2/nevpt2/nevpt2.h:29:
In file included from ../../src/pt2/mp2/mp2cache.h:29:
In file included from ../../src/df/dfdistt.h:29:
In file included from ../../src/df/df.h:28:
In file included from ../../src/df/paralleldf.h:29:
In file included from ../../src/df/dfinttask_old.h:28:
./../src/integral/rys/rysintegral.h:153:18: warning: 'compute' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void compute() = 0;
^
./../src/integral/rys/rysintegral.h:174:30: note: in instantiation of template class 'bagel::RysIntegral<std::__1::complex<double>, bagel::Int_t::London>' requested here
extern template class bagel::RysIntegral<std::complex<double>,bagel::Int_t::London>;
^
./../src/integral/integral.h:42:18: note: overridden virtual function is here
virtual void compute() = 0;
^
In file included from dmp2/dmp2.cc:31:
In file included from ../../src/df/reldffull.h:28:
In file included from ../../src/df/reldf.h:29:
In file included from ../../src/df/df.h:28:
In file included from ../../src/df/paralleldf.h:29:
In file included from ../../src/df/dfinttask_old.h:28:
In file included from ../../src/integral/rys/rysintegral.h:32:
In file included from ../../src/molecule/shell.h:29:
./../src/util/math/zmatrix.h:73:18: warning: 'diagonalize' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void diagonalize(VecView vec);
^
./../src/util/math/matrix_base.h:123:18: note: overridden virtual function is here
virtual void diagonalize(VecView vec) = 0;
^
In file included from dmp2/dmp2.cc:31:
In file included from ../../src/df/reldffull.h:28:
In file included from ../../src/df/reldf.h:29:
In file included from ../../src/df/df.h:28:
In file included from ../../src/df/paralleldf.h:29:
In file included from ../../src/df/dfinttask_old.h:28:
./../src/integral/rys/rysintegral.h:153:18: warning: 'compute' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void compute() = 0;
^
./../src/integral/rys/rysintegral.h:173:30: note: in instantiation of template class 'bagel::RysIntegral<double, bagel::Int_t::Standard>' requested here
extern template class bagel::RysIntegral<double,bagel::Int_t::Standard>;
^
./../src/integral/integral.h:42:18: note: overridden virtual function is here
virtual void compute() = 0;
^
In file included from dmp2/dmp2.cc:31:
In file included from ../../src/df/reldffull.h:28:
In file included from ../../src/df/reldf.h:29:
In file included from ../../src/df/df.h:28:
In file included from ../../src/df/paralleldf.h:29:
In file included from ../../src/df/dfinttask_old.h:28:
./../src/integral/rys/rysintegral.h:153:18: warning: 'compute' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void compute() = 0;
^
./../src/integral/rys/rysintegral.h:174:30: note: in instantiation of template class 'bagel::RysIntegral<std::__1::complex<double>, bagel::Int_t::London>' requested here
extern template class bagel::RysIntegral<std::complex<double>,bagel::Int_t::London>;
^
./../src/integral/integral.h:42:18: note: overridden virtual function is here
virtual void compute() = 0;
^
In file included from nevpt2/nevpt2.cc:26:
In file included from ../../src/scf/hf/fock.h:31:
In file included from ../../src/integral/rys/eribatch.h:28:
./../src/integral/rys/eribatch_base.h:41:18: warning: 'root_weight' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void root_weight(const int ps) = 0;
^
./../src/integral/rys/eribatch_base.h:95:30: note: in instantiation of template class 'bagel::ERIBatch_Base<double, bagel::Int_t::Standard>' requested here
extern template class bagel::ERIBatch_Base<double,bagel::Int_t::Standard>;
^
./../src/integral/rys/rysintegral.h:92:18: note: overridden virtual function is here
virtual void root_weight(const int ps) = 0;
^
In file included from nevpt2/nevpt2.cc:26:
In file included from ../../src/scf/hf/fock.h:31:
In file included from ../../src/integral/rys/eribatch.h:28:
./../src/integral/rys/eribatch_base.h:41:18: warning: 'root_weight' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void root_weight(const int ps) = 0;
^
./../src/integral/rys/eribatch_base.h:96:30: note: in instantiation of template class 'bagel::ERIBatch_Base<std::__1::complex<double>, bagel::Int_t::London>' requested here
extern template class bagel::ERIBatch_Base<std::complex<double>,bagel::Int_t::London>;
^
./../src/integral/rys/rysintegral.h:92:18: note: overridden virtual function is here
virtual void root_weight(const int ps) = 0;
^
In file included from nevpt2/nevpt2.cc:28:
In file included from ../../src/mat1e/rel/relhcore.h:32:
In file included from ../../src/mat1e/rel/small1e.h:31:
In file included from ../../src/integral/rys/naibatch.h:28:
In file included from ../../src/integral/rys/coulombbatch_energy.h:28:
./../src/integral/rys/coulombbatch_base.h:50:18: warning: 'root_weight' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void root_weight(const int ps) = 0;
^
./../src/integral/rys/coulombbatch_base.h:99:30: note: in instantiation of template class 'bagel::CoulombBatch_Base<double, bagel::Int_t::Standard>' requested here
extern template class bagel::CoulombBatch_Base<double>;
^
./../src/integral/rys/rysintegral.h:92:18: note: overridden virtual function is here
virtual void root_weight(const int ps) = 0;
^
In file included from nevpt2/nevpt2.cc:28:
In file included from ../../src/mat1e/rel/relhcore.h:32:
In file included from ../../src/mat1e/rel/small1e.h:31:
In file included from ../../src/integral/rys/naibatch.h:28:
In file included from ../../src/integral/rys/coulombbatch_energy.h:28:
./../src/integral/rys/coulombbatch_base.h:50:18: warning: 'root_weight' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void root_weight(const int ps) = 0;
^
./../src/integral/rys/coulombbatch_base.h:100:30: note: in instantiation of template class 'bagel::CoulombBatch_Base<std::__1::complex<double>, bagel::Int_t::London>' requested here
extern template class bagel::CoulombBatch_Base<std::complex<double>,bagel::Int_t::London>;
^
./../src/integral/rys/rysintegral.h:92:18: note: overridden virtual function is here
virtual void root_weight(const int ps) = 0;
^
In file included from nevpt2/nevpt2.cc:29:
In file included from ../../src/multi/casscf/cassecond.h:29:
In file included from ../../src/multi/casscf/casscf.h:35:
In file included from ../../src/ci/fci/distfci.h:30:
./../src/ci/fci/fci_base.h:154:46: warning: 'conv_to_ref' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual std::shared_ptr<const Reference> conv_to_ref() const = 0;
^
./../src/wfn/method.h:57:46: note: overridden virtual function is here
virtual std::shared_ptr<const Reference> conv_to_ref() const = 0;
^
In file included from nevpt2/nevpt2.cc:29:
In file included from ../../src/multi/casscf/cassecond.h:29:
In file included from ../../src/multi/casscf/casscf.h:36:
In file included from ../../src/ci/fci/knowles.h:32:
./../src/ci/fci/fci.h:95:18: warning: 'update' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
virtual void update(std::shared_ptr<const Matrix>) = 0;
^
./../src/ci/fci/fci_base.h:104:18: note: overridden virtual function is here
virtual void update(std::shared_ptr<const Matrix>) = 0;
^
3 warnings generated.
/usr/local/bin/mpicxx: line 296: 97746 Killed $Show $CXX ${final_cppflags} $PROFILE_INCPATHS ${final_cxxflags} "${allargs[@]}" -I$includedir
gmake[4]: *** [Makefile:438: nevpt2/nevpt2.lo] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src/pt2'
gmake[3]: *** [Makefile:640: all-recursive] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src'
gmake[2]: *** [Makefile:423: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2'
gmake[1]: *** [Makefile:355: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/bagel
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