[package - main-powerpc64-default][biology/paml] Failed for paml-4.9j in stage
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu May 13 13:37:52 UTC 2021
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jrm at FreeBSD.org
Log URL: http://pylon.nyi.freebsd.org/data/main-powerpc64-default/p0c0a4f4b9148_scb07628d9e/logs/paml-4.9j.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=main-powerpc64-default&build=p0c0a4f4b9148_scb07628d9e
Log:
=>> Building biology/paml
build started at Thu May 13 13:31:13 UTC 2021
port directory: /usr/ports/biology/paml
package name: paml-4.9j
building for: FreeBSD main-powerpc64-default-job-02 14.0-CURRENT FreeBSD 14.0-CURRENT 1400013 powerpc
maintained by: jrm at FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1400003
Jail OSVERSION: 1400013
Job Id: 02
!!! Jail is newer than host. (Jail: 1400013, Host: 1400003) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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UNAME_v=FreeBSD 14.0-CURRENT 1400013
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LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-8-gaf08dbda
MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-powerpc64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-powerpc64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for paml-4.9j:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
jrm at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/paml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/paml/work HOME=/wrkdirs/usr/ports/biology/paml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/paml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/paml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/paml/work HOME=/wrkdirs/usr/ports/biology/paml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/paml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/paml" EXAMPLESDIR="share/examples/paml" DATADIR="share/paml" WWWDIR="www/paml" ETCDIR="etc/paml"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/paml DOCSDIR=/usr/local/share/doc/paml EXAMPLESDIR=/usr/local/share/examples/paml WWWDIR=/usr/local/www/paml ETCDIR=/usr/local/etc/paml
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git at github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: powerpc64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git at github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: powerpc64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git at github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: powerpc64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
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ARCH=powerpc64
PPC_ABI=ELFv2
OPSYS=FreeBSD
_OSRELEASE=14.0-CURRENT
OSREL=14.0
OSVERSION=1400013
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> paml-4.9j depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[main-powerpc64-default-job-02] Installing pkg-1.16.3...
[main-powerpc64-default-job-02] Extracting pkg-1.16.3: .......... done
===> paml-4.9j depends on file: /usr/local/sbin/pkg - found
===> Returning to build of paml-4.9j
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by paml-4.9j for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by paml-4.9j for building
=> SHA256 Checksum OK for paml4.9j.tgz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by paml-4.9j for building
===> Extracting for paml-4.9j
=> SHA256 Checksum OK for paml4.9j.tgz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for paml-4.9j
===> Converting DOS text files to UNIX text files
===> Applying FreeBSD patches for paml-4.9j from /usr/ports/biology/paml/files
===========================================================================
=======================<phase: build-depends >============================
===> paml-4.9j depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.txz
[main-powerpc64-default-job-02] Installing gmake-4.3_2...
<snip>
int sprintf(char * __restrict, const char * __restrict, ...);
^
evolver.c:186:54: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
for (i = 0; i < com.ns; i++) sprintf(com.spname[i], "S%d", i + 1);
^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int sprintf(char * __restrict, const char * __restrict, ...);
^
evolver.c:299:26: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
if ((p = strstr(com.spname[i], key))
^~~~~~~~~~~~~
/usr/include/string.h:120:26: note: passing argument to parameter here
char *strstr(const char *, const char *) __pure;
^
evolver.c:634:18: warning: passing 'unsigned char [512]' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
fdaa = gfopen(com.daafile, "r");
^~~~~~~~~~~
./paml.h:209:20: note: passing argument to parameter 'filename' here
FILE *gfopen(char *filename, char *mode);
^
evolver.c:670:19: warning: initializing 'unsigned char *' with an expression of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
unsigned char *pch = (com.seqtype == 2 ? AAs : BASEs);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
evolver.c:672:34: warning: passing 'unsigned char [12]' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
FILE *frootseq = (FILE*)fopen(rootseqf, "r");
^~~~~~~~
/usr/include/stdio.h:259:36: note: passing argument to parameter here
FILE *fopen(const char * __restrict, const char * __restrict);
^
evolver.c:827:15: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
sprintf(com.spname[i], "S%d", i + 1);
^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int sprintf(char * __restrict, const char * __restrict, ...);
^
evolver.c:1062:15: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
MakeSeq(com.z[tree.root], com.ls);
^~~~~~~~~~~~~~~~
evolver.c:662:19: note: passing argument to parameter 'z' here
void MakeSeq(char*z, int ls)
^
23 warnings generated.
In file included from evolver.c:66:
./treesub.c:86:7: warning: assigning to 'unsigned char *' from 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
zt = (char*)malloc(com.ls*lpatt * sizeof(char));
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./treesub.c:105:24: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
^~~~~~~~~~~~
/usr/include/string.h:82:25: note: passing argument to parameter here
int strcmp(const char *, const char *) __pure;
^
In file included from evolver.c:66:
./treesub.c:105:38: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
^~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:82:39: note: passing argument to parameter here
int strcmp(const char *, const char *) __pure;
^
In file included from evolver.c:66:
./treesub.c:143:21: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
^~~~~~~~~~~~
/usr/include/string.h:82:25: note: passing argument to parameter here
int strcmp(const char *, const char *) __pure;
^
In file included from evolver.c:66:
./treesub.c:143:35: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
^~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:82:39: note: passing argument to parameter here
int strcmp(const char *, const char *) __pure;
^
In file included from evolver.c:66:
./treesub.c:256:7: warning: assigning to 'unsigned char *' from 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
zt = (char*)malloc(npatt0*lpatt * sizeof(char));
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./treesub.c:280:24: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
^~~~~~~~~~~~
/usr/include/string.h:82:25: note: passing argument to parameter here
int strcmp(const char *, const char *) __pure;
^
In file included from evolver.c:66:
./treesub.c:280:38: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
^~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:82:39: note: passing argument to parameter here
int strcmp(const char *, const char *) __pure;
^
In file included from evolver.c:66:
./treesub.c:313:21: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
^~~~~~~~~~~~
/usr/include/string.h:82:25: note: passing argument to parameter here
int strcmp(const char *, const char *) __pure;
^
In file included from evolver.c:66:
./treesub.c:313:35: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
k = strcmp(zt + h*lpatt, zt + p2s[ip] * lpatt);
^~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:82:39: note: passing argument to parameter here
int strcmp(const char *, const char *) __pure;
^
In file included from evolver.c:66:
./treesub.c:2973:19: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
if (line[i] == EOF)
~~~~~~~ ^ ~~~
./treesub.c:3106:37: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
if (!strcmp(line, com.spname[i])) break;
^~~~~~~~~~~~~
/usr/include/string.h:82:39: note: passing argument to parameter here
int strcmp(const char *, const char *) __pure;
^
In file included from evolver.c:66:
./treesub.c:3115:23: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
strcpy(com.spname[cnode = tip++], line);
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:84:31: note: passing argument to parameter here
char *strcpy(char * __restrict, const char * __restrict);
^
In file included from evolver.c:67:
./treespace.c:131:18: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
sprintf(com.spname[i], "%d", i+1);
^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int sprintf(char * __restrict, const char * __restrict, ...);
^
evolver.c:121:21: warning: assigning to 'unsigned char *' from 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
com.spname[i] = (char*)malloc(LSPNAME * sizeof(char*));
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
evolver.c:184:54: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
for (i = 0; i < com.ns; i++) sprintf(com.spname[i], "%c", (i < 26 ? 'A' + i : 'a' + i - 26));
^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int sprintf(char * __restrict, const char * __restrict, ...);
^
evolver.c:186:54: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
for (i = 0; i < com.ns; i++) sprintf(com.spname[i], "S%d", i + 1);
^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int sprintf(char * __restrict, const char * __restrict, ...);
^
evolver.c:299:26: warning: passing 'unsigned char *' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
if ((p = strstr(com.spname[i], key))
^~~~~~~~~~~~~
/usr/include/string.h:120:26: note: passing argument to parameter here
char *strstr(const char *, const char *) __pure;
^
evolver.c:634:18: warning: passing 'unsigned char [512]' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
fdaa = gfopen(com.daafile, "r");
^~~~~~~~~~~
./paml.h:209:20: note: passing argument to parameter 'filename' here
FILE *gfopen(char *filename, char *mode);
^
evolver.c:670:19: warning: initializing 'unsigned char *' with an expression of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
unsigned char *pch = (com.seqtype == 2 ? AAs : BASEs);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
evolver.c:672:34: warning: passing 'unsigned char [12]' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
FILE *frootseq = (FILE*)fopen(rootseqf, "r");
^~~~~~~~
/usr/include/stdio.h:259:36: note: passing argument to parameter here
FILE *fopen(const char * __restrict, const char * __restrict);
^
evolver.c:827:15: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
sprintf(com.spname[i], "S%d", i + 1);
^~~~~~~~~~~~~
/usr/include/stdio.h:286:31: note: passing argument to parameter here
int sprintf(char * __restrict, const char * __restrict, ...);
^
evolver.c:1062:15: warning: passing 'unsigned char *' to parameter of type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
MakeSeq(com.z[tree.root], com.ls);
^~~~~~~~~~~~~~~~
evolver.c:662:19: note: passing argument to parameter 'z' here
void MakeSeq(char*z, int ls)
^
23 warnings generated.
===========================================================================
=======================<phase: run-depends >============================
===========================================================================
=======================<phase: stage >============================
===> Staging for paml-4.9j
===> Generating temporary packing list
install -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/baseml /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/basemlg /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/chi2 /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/codeml /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/evolver /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/evolverNSbranches /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/evolverNSbranchsites /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/evolverNSsites /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/pamp /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install -s -m 555 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/src/yn00 /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/bin
install -m 0644 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/doc/* /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/share/doc/paml
install -m 0644 /wrkdirs/usr/ports/biology/paml/work/paml4.9j/README.txt /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/share/doc/paml
(cd /wrkdirs/usr/ports/biology/paml/work/paml4.9j && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE "dat Technical" /wrkdirs/usr/ports/biology/paml/work/stage/usr/local/share/examples/paml)
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/paml
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