[package - 130i386-default][misc/xgboost] Failed for xgboost-1.4.1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu May 13 03:13:00 UTC 2021
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Log URL: http://beefy15.nyi.freebsd.org/data/130i386-default/463524251ec6/logs/xgboost-1.4.1.log
Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=130i386-default&build=463524251ec6
Log:
=>> Building misc/xgboost
build started at Thu May 13 03:12:39 UTC 2021
port directory: /usr/ports/misc/xgboost
package name: xgboost-1.4.1
building for: FreeBSD 130i386-default-job-11 13.0-RELEASE FreeBSD 13.0-RELEASE i386
maintained by: yuri at FreeBSD.org
Makefile ident:
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1400008
Jail OSVERSION: 1300139
Job Id: 11
---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1300139
UNAME_v=FreeBSD 13.0-RELEASE
UNAME_r=13.0-RELEASE
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-8-gaf08dbda
MASTERMNT=/usr/local/poudriere/data/.m/130i386-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/130i386-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=130i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/130i386-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for xgboost-1.4.1:
OPENMP=off: Parallel processing support via OpenMP
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/misc/xgboost/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/xgboost/work HOME=/wrkdirs/usr/ports/misc/xgboost/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/xgboost/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/misc/xgboost/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/xgboost/work HOME=/wrkdirs/usr/ports/misc/xgboost/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/xgboost/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/misc/xgboost/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" /usr/local/lib/libdmlc.so -lexecinfo -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install
-m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/xgboost" EXAMPLESDIR="share/examples/xgboost" DATADIR="share/xgboost" WWWDIR="www/xgboost" ETCDIR="etc/xgboost"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/xgboost DOCSDIR=/usr/local/share/doc/xgboost EXAMPLESDIR=/usr/local/share/examples/xgboost WWWDIR=/usr/local/www/xgboost ETCDIR=/usr/local/etc/xgboost
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git at github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git at github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git at github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=13.0-RELEASE
OSREL=13.0
OSVERSION=1300139
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> xgboost-1.4.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[130i386-default-job-11] Installing pkg-1.16.3...
[130i386-default-job-11] Extracting pkg-1.16.3: .......... done
===> xgboost-1.4.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of xgboost-1.4.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by xgboost-1.4.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by xgboost-1.4.1 for building
=> SHA256 Checksum OK for dmlc-xgboost-v1.4.1_GH0.tar.gz.
=> SHA256 Checksum OK for NVlabs-cub-af39ee2_GH0.tar.gz.
=> SHA256 Checksum OK for rapidsai-gputreeshap-3310a30_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by xgboost-1.4.1 for building
===> Extracting for xgboost-1.4.1
=> SHA256 Checksum OK for dmlc-xgboost-v1.4.1_GH0.tar.gz.
=> SHA256 Checksum OK for NVlabs-cub-af39ee2_GH0.tar.gz.
=> SHA256 Checksum OK for rapidsai-gputreeshap-3310a30_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for xgboost-1.4.1
===> Applying FreeBSD patches for xgboost-1.4.1 from /usr/ports/misc/xgboost/files
===========================================================================
=======================<phase: build-depends >============================
===> xgboost-1.4.1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.20.2.txz
[130i386-default-job-11] Installing cmake-3.20.2...
[130i386-default-job-11] `-- Installing curl-7.76.1...
[130i386-default-job-11] | `-- Installing ca_root_nss-3.63...
[130i386-default-job-11] | `-- Extracting ca_root_nss-3.63: ........ done
[130i386-default-job-11] | `-- Installing libnghttp2-1.43.0...
[130i386-default-job-11] | `-- Extracting libnghttp2-1.43.0: .......... done
[130i386-default-job-11] `-- Extracting curl-7.76.1: .......... done
[130i386-default-job-11] `-- Installing expat-2.3.0...
[130i386-default-job-11] `-- Extracting expat-2.3.0: .......... done
[130i386-default-job-11] `-- Installing jsoncpp-1.9.4...
[130i386-default-job-11] `-- Extracting jsoncpp-1.9.4: .......... done
[130i386-default-job-11] `-- Installing libarchive-3.5.1,1...
[130i386-default-job-11] | `-- Installing liblz4-1.9.3,1...
[130i386-default-job-11] | `-- Extracting liblz4-1.9.3,1: .......... done
[130i386-default-job-11] `-- Extracting libarchive-3.5.1,1: .......... done
[130i386-default-job-11] `-- Installing libuv-1.41.0...
[130i386-default-job-11] `-- Extracting libuv-1.41.0: .......... done
[130i386-default-job-11] `-- Installing rhash-1.4.1...
[130i386-default-job-11] | `-- Installing gettext-runtime-0.21...
[130i386-default-job-11] | | `-- Installing indexinfo-0.3.1...
[130i386-default-job-11] | | `-- Extracting indexinfo-0.3.1: .... done
[130i386-default-job-11] | `-- Extracting gettext-runtime-0.21: .......... done
[130i386-default-job-11] `-- Extracting rhash-1.4.1: .......... done
[130i386-default-job-11] Extracting cmake-3.20.2: .......... done
=====
Message from ca_root_nss-3.63:
--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
system administrator.
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
===> xgboost-1.4.1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of xgboost-1.4.1
===> xgboost-1.4.1 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.10.2,2.txz
[130i386-default-job-11] Installing ninja-1.10.2,2...
[130i386-default-job-11] `-- Installing python38-3.8.9...
[130i386-default-job-11] | `-- Installing libffi-3.3_1...
[130i386-default-job-11] | `-- Extracting libffi-3.3_1: .......... done
[130i386-default-job-11] | `-- Installing readline-8.1.0_1...
[130i386-default-job-11] | `-- Extracting readline-8.1.0_1: .......... done
[130i386-default-job-11] `-- Extracting python38-3.8.9: .......... done
[130i386-default-job-11] Extracting ninja-1.10.2,2: ........ done
=====
Message from python38-3.8.9:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py38-gdbm databases/py-gdbm at py38
py38-sqlite3 databases/py-sqlite3 at py38
py38-tkinter x11-toolkits/py-tkinter at py38
===> xgboost-1.4.1 depends on executable: ninja - found
===> Returning to build of xgboost-1.4.1
===========================================================================
=======================<phase: lib-depends >============================
===> xgboost-1.4.1 depends on shared library: libdmlc.so - not found
===> Installing existing package /packages/All/dmlc-core-0.3.123.txz
[130i386-default-job-11] Installing dmlc-core-0.3.123...
[130i386-default-job-11] Extracting dmlc-core-0.3.123: .......... done
===> xgboost-1.4.1 depends on shared library: libdmlc.so - found (/usr/local/lib/libdmlc.so)
===> Returning to build of xgboost-1.4.1
===========================================================================
=======================<phase: configure >============================
===> Configuring for xgboost-1.4.1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/misc/xgboost/work/.build
-- The CXX compiler identification is Clang 11.0.1
-- The C compiler identification is Clang 11.0.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- CMake version 3.20.2
-- Performing Test XGBOOST_MM_PREFETCH_PRESENT
-- Performing Test XGBOOST_MM_PREFETCH_PRESENT - Success
-- Performing Test XGBOOST_BUILTIN_PREFETCH_PRESENT
-- Performing Test XGBOOST_BUILTIN_PREFETCH_PRESENT - Success
-- xgboost VERSION: 1.4.1
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_C_FLAGS_RELEASE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
-- Build files have been written to: /wrkdirs/usr/ports/misc/xgboost/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for xgboost-1.4.1
[ 1% 1/61] /usr/bin/c++ -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pthread -std=gnu++14 -MD -MT CMakeFiles/runxgboost.dir/src/cli_main.cc.o -MF CMakeFiles/runxgboost.dir/src/cli_main.cc.o.d -o CMakeFiles/runxgboost.dir/src/cli_main.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/src/cli_main.cc
[ 3% 2/61] /usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -DXGBOOST_MM_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -funroll-loops -pthread -std=gnu++14 -MD -MT src/CMakeFiles/objxgboost.dir/common/charconv.cc.o -MF src/CMakeFiles/objxgboost.dir/common/charconv.cc.o.d -o src/CMakeFiles/objxgboost.dir/common/charconv.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/src/common/charconv.cc
[ 4% 3/61] /usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -DXGBOOST_MM_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -funroll-loops -pthread -std=gnu++14 -MD -MT src/CMakeFiles/objxgboost.dir/c_api/c_api.cc.o -MF src/CMakeFiles/objxgboost.dir/c_api/c_api.cc.o.d -o src/CMakeFiles/objxgboost.dir/c_api/c_api.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/src/c_api/c_api.cc
FAILED: src/CMakeFiles/objxgboost.dir/c_api/c_api.cc.o
/usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -DXGBOOST_MM_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -funroll-loops -pthread -std=gnu++14 -MD -MT src/CMakeFiles/objxgboost.dir/c_api/c_api.cc.o -MF src/CMakeFiles/objxgboost.dir/c_api/c_api.cc.o.d -o src/CMakeFiles/objxgboost.dir/c_api/c_api.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/src/c_api/c_api.cc
/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/src/c_api/c_api.cc:738:70: error: non-constant-expression cannot be narrowed from type 'xgboost::bst_ulong' (aka 'unsigned long long') to 'size_t' (aka 'unsigned int') in initializer list [-Wc++11-narrowing]
StringView{indptr}, StringView{indices}, StringView{data}, cols}};
^~~~
/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.4.1/src/c_api/c_api.cc:738:70: note: insert an explicit cast to silence this issue
StringView{indptr}, StringView{indices}, StringView{data}, cols}};
^~~~
static_cast<size_t>( )
1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1
Stop.
make: stopped in /usr/ports/misc/xgboost
More information about the freebsd-pkg-fallout
mailing list