[package - 122i386-quarterly][biology/ugene] Failed for ugene-38.0 in fetch
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu May 13 01:20:35 UTC 2021
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: h2+fbsdports at fsfe.org
Log URL: http://beefy4.nyi.freebsd.org/data/122i386-quarterly/35592d9ef8ba/logs/ugene-38.0.log
Build URL: http://beefy4.nyi.freebsd.org/build.html?mastername=122i386-quarterly&build=35592d9ef8ba
Log:
=>> Building biology/ugene
build started at Thu May 13 01:20:29 UTC 2021
port directory: /usr/ports/biology/ugene
package name: ugene-38.0
building for: FreeBSD 122i386-quarterly-job-03 12.2-RELEASE-p6 FreeBSD 12.2-RELEASE-p6 i386
maintained by: h2+fbsdports at fsfe.org
Makefile ident:
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1400008
Jail OSVERSION: 1202000
Job Id: 03
---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1202000
UNAME_v=FreeBSD 12.2-RELEASE-p6
UNAME_r=12.2-RELEASE-p6
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-8-gaf08dbda
MASTERMNT=/usr/local/poudriere/data/.m/122i386-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/122i386-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=122i386-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/122i386-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for ugene-38.0:
OPENCL=off: Heterogeneous computing via OpenCL
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
h2+fbsdports at fsfe.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--with-qt-includes=/usr/local/include/qt5 --with-qt-libraries=/usr/local/lib/qt5 --with-extra-includes=/usr/local/include --with-extra-libs=/usr/local/lib
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/biology/ugene/work/ugene-38.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" QTDIR="/usr/local/lib/qt5" QMAKE="/usr/local/lib/qt5/bin/qmake" MOC="/usr/local/lib/qt5/bin/moc" RCC="/usr/local/lib/qt5/bin/rcc" UIC="/usr/local/lib/qt5/bin/uic" QMAKESPEC="/usr/local/lib/qt5/mkspecs/freebsd-$(ccver="$(c++ --version)"; case "$ccver" in *clang*) echo clang ;; *) echo g++ ;; esac)" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ugene/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/biology/ugene/work/ugene-38.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ugene/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -msse2" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
QT_BINDIR="lib/qt5/bin" QT_INCDIR="include/qt5" QT_LIBDIR="lib/qt5" QT_ARCHDIR="lib/qt5" QT_PLUGINDIR="lib/qt5/plugins" QT_LIBEXECDIR="libexec/qt5" QT_IMPORTDIR="lib/qt5/imports" QT_QMLDIR="lib/qt5/qml" QT_DATADIR="share/qt5" QT_DOCDIR="share/doc/qt5" QT_L10NDIR="share/qt5/translations" QT_EXAMPLEDIR="share/examples/qt5" QT_TESTDIR="share/qt5/tests" QT_MKSPECDIR="lib/qt5/mkspecs" QT_QTCHOOSERDIR="etc/xdg/qtchooser" DEBUG="@comment " OSREL=12.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/ugene" EXAMPLESDIR="share/examples/ugene" DATADIR="share/ugene" WWWDIR="www/ugene" ETCDIR="etc/ugene"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ugene DOCSDIR=/usr/local/share/doc/ugene EXAMPLESDIR=/usr/local/share/examples/ugene WWWDIR=/usr/local/www/ugene ETCDIR=/usr/local/etc/ugene
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git at github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.1 (git at github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git at github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: i386-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=12.2-RELEASE-p6
OSREL=12.2
OSVERSION=1202000
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv2+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ugene-38.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.3.txz
[122i386-quarterly-job-03] Installing pkg-1.16.3...
[122i386-quarterly-job-03] Extracting pkg-1.16.3: .......... done
===> ugene-38.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ugene-38.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2+ accepted by the user
=> ugeneunipro-ugene-38.0_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/ugeneunipro/ugene/tar.gz/38.0?dummy=/ugeneunipro-ugene-38.0_GH0.tar.gz
fetch: https://codeload.github.com/ugeneunipro/ugene/tar.gz/38.0?dummy=/ugeneunipro-ugene-38.0_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/ugeneunipro/ugene/tar.gz/38.0?dummy=/ugeneunipro-ugene-38.0_GH0.tar.gz: size of remote file is not known
ugeneunipro-ugene-38.0_GH0.tar.gz 22 MB 6960 kBps 04s
=> Fetched file size mismatch (expected 23448730, actual 23446282)
=> Trying next site
=> Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/ugeneunipro-ugene-38.0_GH0.tar.gz
fetch: http://distcache.FreeBSD.org/ports-distfiles/ugeneunipro-ugene-38.0_GH0.tar.gz: Not Found
=> Couldn't fetch it - please try to retrieve this
=> port manually into /portdistfiles/ and try again.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ugene
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