[package - 13stable-armv7-quarterly][science/qmcpack] Failed for qmcpack-3.10.0 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sat Jan 30 01:35:39 UTC 2021
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: branches/2021Q1/science/qmcpack/Makefile 555002 2020-11-13 05:10:06Z yuri $
Log URL: http://beefy12.nyi.freebsd.org/data/13stable-armv7-quarterly/562611/logs/qmcpack-3.10.0.log
Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=13stable-armv7-quarterly&build=562611
Log:
=>> Building science/qmcpack
build started at Sat Jan 30 01:34:11 UTC 2021
port directory: /usr/ports/science/qmcpack
package name: qmcpack-3.10.0
building for: FreeBSD 13stable-armv7-quarterly-job-05 13.0-ALPHA2 FreeBSD 13.0-ALPHA2 1300136 arm
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: branches/2021Q1/science/qmcpack/Makefile 555002 2020-11-13 05:10:06Z yuri $
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> qmcpack-3.10.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.16.1.txz
[13stable-armv7-quarterly-job-05] Installing pkg-1.16.1...
[13stable-armv7-quarterly-job-05] Extracting pkg-1.16.1: .......... done
===> qmcpack-3.10.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of qmcpack-3.10.0
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by qmcpack-3.10.0 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by qmcpack-3.10.0 for building
<snip>
=====
Message from python37-3.7.9_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py37-gdbm databases/py-gdbm at py37
py37-sqlite3 databases/py-sqlite3 at py37
py37-tkinter x11-toolkits/py-tkinter at py37
===> qmcpack-3.10.0 depends on file: /usr/local/bin/python3.7 - found
===> Returning to build of qmcpack-3.10.0
===> qmcpack-3.10.0 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> qmcpack-3.10.0 depends on shared library: libboost_system.so - not found
===> Installing existing package /packages/All/boost-libs-1.72.0_3.txz
[13stable-armv7-quarterly-job-05] Installing boost-libs-1.72.0_3...
[13stable-armv7-quarterly-job-05] `-- Installing icu-68.2,1...
[13stable-armv7-quarterly-job-05] `-- Extracting icu-68.2,1: .......... done
[13stable-armv7-quarterly-job-05] Extracting boost-libs-1.72.0_3: .......... done
=====
Message from boost-libs-1.72.0_3:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> qmcpack-3.10.0 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so)
===> Returning to build of qmcpack-3.10.0
===> qmcpack-3.10.0 depends on shared library: libfftw3.so - not found
===> Installing existing package /packages/All/fftw3-3.3.9.txz
[13stable-armv7-quarterly-job-05] Installing fftw3-3.3.9...
[13stable-armv7-quarterly-job-05] Extracting fftw3-3.3.9: .......... done
===> qmcpack-3.10.0 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so)
===> Returning to build of qmcpack-3.10.0
===> qmcpack-3.10.0 depends on shared library: libhdf5.so - not found
===> Installing existing package /packages/All/hdf5-1.10.6,1.txz
[13stable-armv7-quarterly-job-05] Installing hdf5-1.10.6,1...
[13stable-armv7-quarterly-job-05] `-- Installing hdf-szip-2.1.1...
[13stable-armv7-quarterly-job-05] `-- Extracting hdf-szip-2.1.1: .......... done
[13stable-armv7-quarterly-job-05] Extracting hdf5-1.10.6,1: .......... done
===> qmcpack-3.10.0 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===> Returning to build of qmcpack-3.10.0
===> qmcpack-3.10.0 depends on shared library: libmpich.so - not found
===> Installing existing package /packages/All/mpich-3.2.1_6.txz
[13stable-armv7-quarterly-job-05] Installing mpich-3.2.1_6...
[13stable-armv7-quarterly-job-05] `-- Installing hwloc-1.11.13...
[13stable-armv7-quarterly-job-05] | `-- Installing libpciaccess-0.16...
[13stable-armv7-quarterly-job-05] | | `-- Installing pciids-20201127...
[13stable-armv7-quarterly-job-05] | | `-- Extracting pciids-20201127: ..... done
[13stable-armv7-quarterly-job-05] | `-- Extracting libpciaccess-0.16: ......... done
[13stable-armv7-quarterly-job-05] | `-- Installing libxml2-2.9.10_2...
[13stable-armv7-quarterly-job-05] | `-- Extracting libxml2-2.9.10_2: .......... done
[13stable-armv7-quarterly-job-05] `-- Extracting hwloc-1.11.13: .......... done
[13stable-armv7-quarterly-job-05] `-- Installing perl5-5.32.1_1...
[13stable-armv7-quarterly-job-05] `-- Extracting perl5-5.32.1_1: .......... done
[13stable-armv7-quarterly-job-05] Extracting mpich-3.2.1_6: .......... done
=====
Message from mpich-3.2.1_6:
--
===> NOTICE:
The mpich port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> qmcpack-3.10.0 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so)
===> Returning to build of qmcpack-3.10.0
===> qmcpack-3.10.0 depends on shared library: libopenblas.so - not found
===> Installing existing package /packages/All/openblas-0.3.12,1.txz
[13stable-armv7-quarterly-job-05] Installing openblas-0.3.12,1...
[13stable-armv7-quarterly-job-05] Extracting openblas-0.3.12,1: .......... done
===> qmcpack-3.10.0 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> Returning to build of qmcpack-3.10.0
===> qmcpack-3.10.0 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so)
===> qmcpack-3.10.0 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for qmcpack-3.10.0
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/qmcpack/work/.build
-- The C compiler identification is Clang 11.0.1
-- The CXX compiler identification is Clang 11.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /nxb-bin/usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/local/bin/python3.7 (found version "3.7.9") found components: Interpreter
env: python3: No such file or directory
-- Unable to import PySCF python module. PySCF tests will not be run.
-- QMC_SYMLINK_TEST_FILES = ON. Using symbolic links for large test files may cause test failures if the build is installed on a separate filesystem from the source. For example, Titan at OLCF.
-- CMAKE_BUILD_TYPE is RELEASE
-- defining the float point precision
Base precision = double
Full precision = double
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Looking for memory.h
-- Looking for memory.h - found
-- Looking for sys/stat.h
-- Looking for sys/stat.h - found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Could NOT find Git (missing: GIT_EXECUTABLE)
-- Trying to figure out .....
-- Compiler: Clang
-- libstdc++/C++ compiler version compatibility check failed
CMake Error at CMake/Testlibstdc++.cmake:30 (message):
Change Dir:
/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp
Run Build Command(s):/usr/bin/make cmTC_a8aa9/fast && /nxb-bin/usr/bin/make
-f CMakeFiles/cmTC_a8aa9.dir/build.make CMakeFiles/cmTC_a8aa9.dir/build
Building CXX object CMakeFiles/cmTC_a8aa9.dir/try_libstdcxx.cpp.o
/nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem
/usr/local/include -fno-strict-aliasing -I/usr/local/include/catch2
-isystem /usr/local/include -fopenmp -fstrict-aliasing
-D__forceinline=inline -Wvla -Wall -Wno-unused-variable
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-Wno-unknown-pragmas -Wmisleading-indentation -std=c++14 -o
CMakeFiles/cmTC_a8aa9.dir/try_libstdcxx.cpp.o -c
/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp/try_libstdcxx.cpp
Linking CXX executable cmTC_a8aa9
/usr/local/bin/cmake -E cmake_link_script
CMakeFiles/cmTC_a8aa9.dir/link.txt --verbose=1
/nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem
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-isystem /usr/local/include -fopenmp -fstrict-aliasing
-D__forceinline=inline -Wvla -Wall -Wno-unused-variable
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-Wno-unknown-pragmas -Wmisleading-indentation
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-fstack-protector-strong -L/usr/local/lib
CMakeFiles/cmTC_a8aa9.dir/try_libstdcxx.cpp.o -o cmTC_a8aa9
/usr/local/bin/ld: cannot find -lomp
c++: error: linker command failed with exit code 1 (use -v to see
invocation)
*** Error code 1
Stop.
make[2]: stopped in
/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp
*** Error code 1
Stop.
make[1]: stopped in
/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp
Call Stack (most recent call first):
CMakeLists.txt:412 (include)
-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeOutput.log".
*** Error code 1
Stop.
make: stopped in /usr/ports/science/qmcpack
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