[package - head-powerpc64-default][science/rdkit] Failed for rdkit-2020.09.3 in package
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sun Dec 27 21:48:46 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: head/science/rdkit/Makefile 558009 2020-12-13 22:00:58Z yuri $
Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p558707_s368819/logs/rdkit-2020.09.3.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p558707_s368819
Log:
=>> Building science/rdkit
build started at Sun Dec 27 19:52:53 UTC 2020
port directory: /usr/ports/science/rdkit
package name: rdkit-2020.09.3
building for: FreeBSD head-powerpc64-default-job-13 13.0-CURRENT FreeBSD 13.0-CURRENT 1300132 powerpc
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/rdkit/Makefile 558009 2020-12-13 22:00:58Z yuri $
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1300121
Jail OSVERSION: 1300132
Job Id: 13
!!! Jail is newer than host. (Jail: 1300132, Host: 1300121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1300132
UNAME_v=FreeBSD 13.0-CURRENT 1300132
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-8-gaf08dbda
MASTERMNT=/usr/local/poudriere/data/.m/head-powerpc64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-powerpc64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for rdkit-2020.09.3:
DOCS=on: Build and/or install documentation
PYTHON=on: Python bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/rdkit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
SHLIB_VER=2020.09.3 PORTDOCS="" DOCS="" NO_DOCS="@comment " PYTHON="" NO_PYTHON="@comment " LITTLE_ENDIAN="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/RDKit" EXAMPLESDIR="share/examples/rdkit" DATADIR="share/RDKit" WWWDIR="www/rdkit" ETCDIR="etc/rdkit"
--End PLIST_SUB--
--SUB_LIST--
DOCS="" NO_DOCS="@comment " PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/RDKit DOCSDIR=/usr/local/share/doc/RDKit EXAMPLESDIR=/usr/local/share/examples/rdkit WWWDIR=/usr/local/www/rdkit ETCDIR=/usr/local/etc/rdkit
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
PPC_ABI=ELFv2
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300132
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> rdkit-2020.09.3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.15.10.txz
[head-powerpc64-default-job-13] Installing pkg-1.15.10...
[head-powerpc64-default-job-13] Extracting pkg-1.15.10: .......... done
===> rdkit-2020.09.3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of rdkit-2020.09.3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
=> rdkit-rdkit-Release_2020_09_3_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2020_09_3?dummy=/rdkit-rdkit-Release_2020_09_3_GH0.tar.gz
fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2020_09_3?dummy=/rdkit-rdkit-Release_2020_09_3_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2020_09_3?dummy=/rdkit-rdkit-Release_2020_09_3_GH0.tar.gz: size of remote file is not known
rdkit-rdkit-Release_2020_09_3_GH0.tar.gz 55 MB 11 MBps 05s
=> rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz
fetch: https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz: size of remote file is not known
rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz 134 kB 5287 kBps 00s
===> Fetching all distfiles required by rdkit-2020.09.3 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by rdkit-2020.09.3 for building
=> SHA256 Checksum OK for rdkit-rdkit-Release_2020_09_3_GH0.tar.gz.
=> SHA256 Checksum OK for rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by rdkit-2020.09.3 for building
===> Extracting for rdkit-2020.09.3
=> SHA256 Checksum OK for rdkit-rdkit-Release_2020_09_3_GH0.tar.gz.
=> SHA256 Checksum OK for rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz.
<snip>
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawText.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawTextSVG.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawTextJS.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1.2020.09.3" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so
-- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawText.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawTextFT.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawTextFTSVG.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawTextFTJS.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1.2020.09.3" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FMCS/FMCS.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FMCS/Graph.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdFMCS.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdFMCS.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1.2020.09.3" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolHash/MolHash.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolHash/nmmolhash.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolHash.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolHash.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1.2020.09.3" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MMPA/MMPA.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMMPA.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMMPA.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1.2020.09.3" to ""
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/CIPLabeler/CIPLabeler.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdCIPLabeler.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdCIPLabeler.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1.2020.09.3" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Deprotect/Deprotect.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdDeprotect.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdDeprotect.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1.2020.09.3" to ""
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdReducedGraphs.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdReducedGraphs.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1.2020.09.3" to ""
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Trajectory/Snapshot.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Trajectory/Trajectory.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1.2020.09.3" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/PatternFactory.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdSubstructLibrary.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdSubstructLibrary.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1.2020.09.3" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1.2020.09.3" to ""
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInterchange/MolInterchange.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInterchange/details.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolInterchange.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolInterchange.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1.2020.09.3" to ""
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdSLNParse.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdSLNParse.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdchem.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdchem.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdmolops.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdmolops.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdqueries.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdqueries.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdmolfiles.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdmolfiles.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdtrajectory.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdtrajectory.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1.2020.09.3" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/MolStandardize.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Metal.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Normalize.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Validate.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Charge.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Tautomer.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Fragment.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1.2020.09.3" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1.2020.09.3" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolEnumerator/MolEnumerator.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolEnumerator.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolEnumerator.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1.2020.09.3" to ""
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Abbreviations/Abbreviations.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdAbbreviations.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdAbbreviations.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/AndQuery.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/EqualityQuery.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/GreaterEqualQuery.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/GreaterQuery.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/LessEqualQuery.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/LessQuery.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/NullQueryAlgebra.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/OrQuery.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/Query.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/QueryObjects.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/RangeQuery.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/SetQuery.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/XOrQuery.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Features/Feature.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1.2020.09.3" to ""
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/ML/Data/cQuantize.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/ML/Data/cQuantize.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1.2020.09.3
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1.2020.09.3" to ""
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
-- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdChemicalFeatures.so" to "/usr/local/lib"
-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/RDPaths.py
====> Compressing man pages (compress-man)
===========================================================================
=======================<phase: package >============================
===> Building package for rdkit-2020.09.3
pkg-static: Unable to access file /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/DistPicker.h:No such file or directory
pkg-static: Unable to access file /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h:No such file or directory
pkg-static: Unable to access file /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/LeaderPicker.h:No such file or directory
pkg-static: Unable to access file /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/MaxMinPicker.h:No such file or directory
*** Error code 1
Stop.
make: stopped in /usr/ports/science/rdkit
More information about the freebsd-pkg-fallout
mailing list